pdl-commit — PDL git commits (read only)

[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, deleted. v2.015-44-g015d9fe

[Zakariyya M. <zsm...@us...>]

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015d9fe5c91f10c9a81c63bb086c413aeb304665 Fixes badval propagation to support all badval configurations
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[pdl-commit] [SCM] pdl branch, master, updated. v2.015-44-g015d9fe

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Summary of changes:
 Basic/Core/pdlcore.c.PL |   22 +++++++++++++++++++---
 t/constructor.t         |    4 ++--
 2 files changed, 21 insertions(+), 5 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, updated. v2.015-44-g015d9fe

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commit 015d9fe5c91f10c9a81c63bb086c413aeb304665
Author: Zakariyya Mughal <zak...@gm...>
Date:   Sun Jul 10 16:18:35 2016 -0500

    Fixes badval propagation to support all badval configurations
    
    The changes in <https://github.com/PDLPorters/pdl/pull/188> broke the
    build for all cases of `BADVAL_USENAN` xor `BADVAL_PER_PDL`.
    
    This was because the checking for badvalues when copying in
    `pdl_kludge_copy_*` did not take into account these variations in
    accessing and setting the badvalue.
    
    For example, a simple comparison using `==` is not valid when NaN
    values are being compared. Here we need to use `!finite(...)` to make
    the comparison if the type can use NaN values.

-----------------------------------------------------------------------

Summary of changes:


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[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, updated. v2.015-44-gd722c4e

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- Log -----------------------------------------------------------------
commit d722c4ef85c6c106f5c005464cab19222515a329
Author: Zakariyya Mughal <zak...@gm...>
Date:   Sun Jul 10 16:18:35 2016 -0500

    Fixes badval propagation to support all badval configurations
    
    The changes in <https://github.com/PDLPorters/pdl/pull/188> broke the
    build for all cases of `BADVAL_USENAN` xor `BADVAL_PER_PDL`.
    
    This was because the checking for badvalues when copying in
    `pdl_kludge_copy_*` did not take into account these variations in
    accessing and setting the badvalue.
    
    For example, a simple comparison using `==` is not valid when of NaN
    values are being compared. Here we need to use `!finite(...)` to make
    the comparison if the type can use NaN values.

-----------------------------------------------------------------------

Summary of changes:
 Basic/Core/pdlcore.c.PL |    2 +-
 1 files changed, 1 insertions(+), 1 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, updated. v2.015-46-g42942d6

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commit 42942d698d1892086673af5036077bb105f4d2a2
Author: Zakariyya Mughal <zak...@gm...>
Date:   Sun Jul 10 18:00:38 2016 -0500

    fixup: badval could be NaN even if BADVAL_USENAN = 0

-----------------------------------------------------------------------

Summary of changes:
 Basic/Core/pdlcore.c.PL |    2 +-
 1 files changed, 1 insertions(+), 1 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, updated. v2.015-45-g7123a3b

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commit 7123a3bcd0f03680f21906db728d8c2658e782ed
Author: Zakariyya Mughal <zak...@gm...>
Date:   Sun Jul 10 17:35:38 2016 -0500

    fixup: Handle NaN in comparison if type requires it

-----------------------------------------------------------------------

Summary of changes:
 Basic/Core/pdlcore.c.PL |   15 ++++++++++++---
 t/constructor.t         |    4 ++--
 2 files changed, 14 insertions(+), 5 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor-per-pdl, created. v2.015-44-gca57882

[Zakariyya M. <zsm...@us...>]

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- Log -----------------------------------------------------------------
commit ca57882c7ed6a2fc627173ff9f877c873e78456a
Author: Zakariyya Mughal <zak...@gm...>
Date:   Sun Jul 10 16:18:35 2016 -0500

    Fixes badval propagation to support all badval configurations
    
    The changes in <https://github.com/PDLPorters/pdl/pull/188> broke the
    build for all cases of `BADVAL_USENAN` xor `BADVAL_PER_PDL`.
    
    This was because the checking for badvalues when copying in
    `pdl_kludge_copy_*` did not take into account these variations in
    accessing and setting the badvalue.

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[pdl-commit] [SCM] pdl branch, sf379-qsort-crash, deleted. v2.015-45-gb0d0a4c

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-----------------------------------------------------------------------
b0d0a4cd946c94509f8ae0014d905f39917ccad3 Merge branch 'sf379-qsort-crash' of ssh://git.code.sf.net/p/pdl/code into sf379-qsort-crash

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[pdl-commit] [SCM] pdl branch, master, updated. v2.015-43-gdcebe92

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commit dcebe92dc4b1a76761d98f2e8408bdccf3ad30b4
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 15:39:06 2016 -0600

    Change pdl_barf to PDL->pdl_barf in ufunc.pd.
    
    Hopefully this will compile on Strawberry. Not sure why the original
    worked OK on my Mac w/ clang.

commit 40d21cbb5608c441cefa91559ee246ed0bc2ca59
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 14:41:16 2016 -0600

    Prevent segfault when qsort etc called with a scalar argument
    
    If a user mistakenly passed a perl scalar argument to qsort and
    its ilk, the SV would be mistaken for a piddle and passed to
    the underlying generic_qsort etc routines. Not surprisingly,
    those routine's array index tricks would cause a segfault. This
    commit causes qsort, qsorti, qsortvec, and qsortveci to barf
    if an argument is passed with incorrect dimensions.
    
    Some care is taken to allow trivial sorts.
    
    2 tests for each routine have been added, and some existing
    tests labeled.

-----------------------------------------------------------------------

Summary of changes:
 Basic/Ufunc/ufunc.pd |   20 +++++++++++++++++++-
 t/ufunc.t            |   30 ++++++++++++++++++++++++------
 2 files changed, 43 insertions(+), 7 deletions(-)


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[pdl-commit] [SCM] pdl branch, sf379-qsort-crash, updated. v2.015-45-gb0d0a4c

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- Log -----------------------------------------------------------------
commit b0d0a4cd946c94509f8ae0014d905f39917ccad3
Merge: aa533d2 0522ad9
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 15:44:16 2016 -0600

    Merge branch 'sf379-qsort-crash' of ssh://git.code.sf.net/p/pdl/code into sf379-qsort-crash

commit aa533d2929dd04626155e974b57330984c78ed56
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 15:39:06 2016 -0600

    Change pdl_barf to PDL->pdl_barf in ufunc.pd.
    
    Hopefully this will compile on Strawberry. Not sure why the original
    worked OK on my Mac w/ clang.

commit 4bcb61acb7f5926f80d4e209d864c7cc0f4eaad3
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 14:41:16 2016 -0600

    Prevent segfault when qsort etc called with a scalar argument
    
    If a user mistakenly passed a perl scalar argument to qsort and
    its ilk, the SV would be mistaken for a piddle and passed to
    the underlying generic_qsort etc routines. Not surprisingly,
    those routine's array index tricks would cause a segfault. This
    commit causes qsort, qsorti, qsortvec, and qsortveci to barf
    if an argument is passed with incorrect dimensions.
    
    Some care is taken to allow trivial sorts.
    
    2 tests for each routine have been added, and some existing
    tests labeled.

-----------------------------------------------------------------------

Summary of changes:
 Basic/Bad/bad.pd             |   36 ++++++++++-
 Basic/Core/Core.pm           |    6 ++-
 Basic/Core/Dev.pm            |    4 +
 Basic/Core/pdlcore.c.PL      |   93 +++++++++++++++++----------
 Basic/Core/pdlcore.h.PL      |    2 +-
 Basic/Math/math.pd           |    2 +-
 Basic/MatrixOps/matrixops.pd |    2 +-
 Basic/PDL.pm                 |    2 +-
 Basic/Ufunc/ufunc.pd         |  148 ++++++++++++++++++++++++++++++++++++++++--
 Changes                      |  126 +++++++++++++++++++++++++++++++++++
 IO/FITS/FITS.pm              |   60 +++++++++---------
 Known_problems               |    8 ++-
 Lib/Transform/transform.pd   |  132 ++++++++++++++++++++++---------------
 MANIFEST                     |    1 +
 t/constructor.t              |   28 +++++++--
 t/fits.t                     |   21 ++++++-
 16 files changed, 532 insertions(+), 139 deletions(-)


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[pdl-commit] [SCM] pdl branch, sf379-qsort-crash, created. v2.015-23-g0522ad9

[Derek L. <la...@us...>]

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The branch, sf379-qsort-crash has been created
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- Log -----------------------------------------------------------------
commit 0522ad9fb9ee082cdd5f75f2e517413d5fca913a
Author: Derek Lamb <la...@us...>
Date:   Mon Jun 27 14:41:16 2016 -0600

    Prevent segfault when qsort etc called with a scalar argument
    
    If a user mistakenly passed a perl scalar argument to qsort and
    its ilk, the SV would be mistaken for a piddle and passed to
    the underlying generic_qsort etc routines. Not surprisingly,
    those routine's array index tricks would cause a segfault. This
    commit causes qsort, qsorti, qsortvec, and qsortveci to barf
    if an argument is passed with incorrect dimensions.
    
    Some care is taken to allow trivial sorts.
    
    2 tests for each routine have been added, and some existing
    tests labeled.

-----------------------------------------------------------------------


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[pdl-commit] [SCM] pdl branch, badval-constructor, deleted. v2.015-41-gd12d7b1

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-----------------------------------------------------------------------
d12d7b1a8682d2a70efbbf89c0b86828b6ae89b7 fix skip count for no-badvals case
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[pdl-commit] [SCM] pdl branch, master, updated. v2.015-41-gd12d7b1

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Summary of changes:
 Basic/Core/Core.pm      |    4 ++
 Basic/Core/pdlcore.c.PL |   89 ++++++++++++++++++++++++++++++-----------------
 Basic/Core/pdlcore.h.PL |    2 +-
 t/constructor.t         |   28 ++++++++++++---
 4 files changed, 85 insertions(+), 38 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor, updated. v2.015-41-gd12d7b1

[Craig D. <zo...@us...>]

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commit d12d7b1a8682d2a70efbbf89c0b86828b6ae89b7
Author: Craig DeForest <zowie@Clio.local>
Date:   Mon Jun 13 00:32:29 2016 -0600

    fix skip count for no-badvals case

-----------------------------------------------------------------------

Summary of changes:
 t/constructor.t |    2 +-
 1 files changed, 1 insertions(+), 1 deletions(-)


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[pdl-commit] [SCM] pdl branch, badval-constructor, created. v2.015-40-g17332b6

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commit 17332b6164712931945c40b1005bd8c06fbe160c
Author: Craig DeForest <zowie@Clio.local>
Date:   Mon Jun 13 00:06:20 2016 -0600

    Add documentation to Core.pm POD; fix test count in constructor.t.

commit a8d9dcd6202d6c33788af903fe744027eac9a293
Author: Craig DeForest <zowie@Clio.local>
Date:   Sun Jun 12 23:47:22 2016 -0600

    remove extraneous test from pdlcore.c.PL; add BAD value tests to constructor.t

commit 305b4f0801bc13bb9e5e77a4254b953f8d328780
Author: Craig DeForest <zowie@Clio.local>
Date:   Sun Jun 12 23:08:16 2016 -0600

    initial attempt to include BAD value propagation.  No tests yet.

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[pdl-commit] [SCM] pdl branch, clang_warnings, updated. v2.015-45-gf51309e

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-----------------------------------------------------------------------

Summary of changes:
 IO/HDF/VS/VS.pd |    1 +
 1 files changed, 1 insertions(+), 0 deletions(-)


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[pdl-commit] [SCM] pdl branch, add_datatype_invalid, updated. v2.015-47-g2bd8982

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commit 2bd898200631382db6ae9f73a2c2c363c8a4e9fb
Author: Derek Lamb <la...@us...>
Date:   Wed Jun 8 22:59:06 2016 -0600

    Revert "HDF: add mfhdf.h to list of #included header files."
    
    This reverts commit f51309ea89eb03df7d22a34ed8d3b5fdd23bae06.
    
    I committed it to the wrong branch. Should be on clang_warnings instead.

-----------------------------------------------------------------------

Summary of changes:
 IO/HDF/VS/VS.pd |    1 -
 1 files changed, 0 insertions(+), 1 deletions(-)


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[pdl-commit] [SCM] pdl branch, add_datatype_invalid, created. v2.015-46-gf06ae90

[Derek L. <la...@us...>]

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commit f06ae901cf7957cfe9b4e907a92c3385f59caac3
Author: Derek Lamb <la...@us...>
Date:   Wed Jun 8 22:45:14 2016 -0600

    add PDL_INVALID to the pdl_datatypes enum list.
    
    The list is generated by Types.pm.PL, but gets put into pdl.h and
    pdlsimple.h. This was motivated by code in Bad.c that assigns to
    a variable of type pdl_datatypes the value -1 (in some error condition
    that is unlikely to be reached). This jives with the ANYVAL_FROM_CTYPE
    macro in pdl.h.  Thanks to Chris Marshall and David Mertens for the
    pointers.  See pdl-devel 2016-05-05 discussion.

commit f51309ea89eb03df7d22a34ed8d3b5fdd23bae06
Author: Derek Lamb <la...@us...>
Date:   Wed Jun 8 22:31:35 2016 -0600

    HDF: add mfhdf.h to list of #included header files.
    
    A few functions (SDstart ... SDend) did not have function prototypes
    in hdf.h, this other header file was necessary.

-----------------------------------------------------------------------


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[pdl-commit] [SCM] pdl branch, clang_warnings, updated. v2.015-44-g0cef0a6

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commit 0cef0a69e1741593dc24fa1f160cdde8c91efcdf
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 13:01:15 2016 -0600

    Add default 'int' return type to Slatec function prototypes.
    
    Some function prototypes that get generated into SlatecProtos.h
    have return types float or double, but most were just missing, and
    the compiler assumed them to be int. The function defs all do
    return int, so I just made it explicit.

commit 1ef579a1964c02c1d6eeb9a81dd808286e57c5ea
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 12:57:01 2016 -0600

    Fix namespace collision for 'warn' in gsl_integ.pd
    
    Perl's 'warn' function had been undef'd because of problems with the gsl code's
    'warn' variable. But PDL::PP inserts code into XS files that calls
    Perl's 'warn' function.  To avoid this I removed the #undef warn and
    changed the gsl variable name from warn to gslwarn.

commit 897bcdf6778ae9fa82bb917f28a6b86b786389b6
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 11:16:34 2016 -0600

    Proper version parsing in Minuit and Slatec Makefile.PLs.

-----------------------------------------------------------------------

Summary of changes:
 Lib/GSL/INTEG/gsl_integ.pd |   48 ++++++++++++++++++++-----------------------
 Lib/Minuit/Makefile.PL     |    3 +-
 Lib/Slatec/Makefile.PL     |    3 +-
 Lib/Slatec/slatec.pd       |    1 +
 4 files changed, 27 insertions(+), 28 deletions(-)


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[pdl-commit] [SCM] pdl branch, fits-64bit-fix, deleted. v2.015-37-gca9af27

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ca9af271b5b00c30dd7b65a8b3e95d9623fc27d9 64 bit fix (bug #421)
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[pdl-commit] [SCM] pdl branch, master, updated. v2.015-37-gca9af27

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Summary of changes:
 IO/FITS/FITS.pm |   49 +++++++++++++++++++++----------------------------
 t/fits.t        |   21 ++++++++++++++++++++-
 2 files changed, 41 insertions(+), 29 deletions(-)


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[pdl-commit] [SCM] pdl branch, fits-64bit-fix, created. v2.015-37-gca9af27

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commit ca9af271b5b00c30dd7b65a8b3e95d9623fc27d9
Author: Craig DeForest <zo...@dh...>
Date:   Tue Jun 7 09:17:33 2016 -0600

    64 bit fix (bug #421)

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[pdl-commit] [SCM] pdl branch, clang_warnings, created. v2.015-41-g7b328d3

[Derek L. <la...@us...>]

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commit 7b328d3a203f58e1b0445f443c8f550421529b87
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 07:55:54 2016 -0600

    include <string.h> so Image2D's resample.c can use strcmp function.

commit 69df8807c7b96375fc5550561c5eae5b2e933c55
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 07:53:37 2016 -0600

    Add PDL_IND and PDL_LL to 2 case switch statements in gsl_random.pd
    
    The switch statement was written long before those datatypes were
    in PDL, and the compiler was nicely complaining about their absense.

commit 3a0c7b393b2ee892dda9d60c8571dca29427d535
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 07:51:48 2016 -0600

    Use fabs instead of abs in PDL::Fit::Gaussian.
    
    Since fitgauss1d[r] has GenericTypes=>[D], it is safe to assume
    that everything will be Double, so using fabs is preferred.

commit 2e7f32591403c47642e47bac06db2c8d9e6952b9
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 07:49:08 2016 -0600

    Change regexp in GD.pd's XS generation to handle two-worded C types
    
    The original regexp took 'unsigned short *' and captured only the
    'short'. This changed allows it to capture 'unsigned short'.

commit 36d834d8e092d4f39a7b9f9d9466ad6058f9aacf
Author: Derek Lamb <la...@us...>
Date:   Tue Jun 7 07:48:01 2016 -0600

    include <stdio.h> from MatrixOps/simq.c to use 'puts' function.

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[pdl-commit] [SCM] pdl tag, v2.016_01, created. v2.015-36-ge16961c

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commit e16961c3444394b17194efbad2dd69dc561c9b11
Author: Chris Marshall <dev...@gm...>
Date:   Wed Jun 1 13:25:20 2016 -0400

    Update Changes for 2.016_01 CPAN devel release.
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[pdl-commit] [SCM] pdl branch, master, updated. v2.015-36-ge16961c

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commit e16961c3444394b17194efbad2dd69dc561c9b11
Author: Chris Marshall <dev...@gm...>
Date:   Wed Jun 1 13:25:20 2016 -0400

    Update Changes for 2.016_01 CPAN devel release.

commit ca92c57b8cc1a9bcde7dbc70548d6b6d96236020
Author: Ed J <mo...@us...>
Date:   Wed Jun 1 13:23:42 2016 -0400

    Add PDL::Doc::add_module to pdlpp_postamble

commit 434f8944828c5181704b5081ad953e9086acf133
Author: Chris Marshall <dev...@gm...>
Date:   Wed Jun 1 13:18:58 2016 -0400

    Update VERSION to 2.016_01 for CPAN developers release

-----------------------------------------------------------------------

Summary of changes:
 Basic/Core/Core.pm |    2 +-
 Basic/Core/Dev.pm  |    4 ++++
 Basic/PDL.pm       |    2 +-
 Changes            |   15 +++++++++++++++
 Known_problems     |    2 +-
 5 files changed, 22 insertions(+), 3 deletions(-)


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