Thread: [Obi-svn-commit] SF.net SVN: obi: [359] branchDevelopment/trunk (Page 3)

Brought to you by: agbeltran, alanr, allysonlister, daniel_schober, and 7 others

obi-svn-commit

[Obi-svn-commit] SF.net SVN: obi: [359] branchDevelopment/trunk

From: <al...@us...> - 2008-03-02 08:32:49

Revision: 359
          http://obi.svn.sourceforge.net/obi/?rev=359&view=rev
Author:   alanr
Date:     2008-03-02 00:32:50 -0800 (Sun, 02 Mar 2008)

Log Message:
-----------
normalize the namespace declarations across all the files, arranged so
that protege doesn't make up any of it's own namespace prefixes

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/DataTransformation.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/InstrumentAndPart.owl
    branchDevelopment/trunk/OBI-Function.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/Quality.owl
    branchDevelopment/trunk/Relations.owl
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/TheRest.owl
    branchDevelopment/trunk/external.owl
    branchDevelopment/trunk/externalDerived.owl
    branchDevelopment/trunk/gather-class-uris.pl
    branchDevelopment/trunk/obi-owl-full.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [361] branchDevelopment/trunk

From: <al...@us...> - 2008-03-02 08:34:15

Revision: 361
          http://obi.svn.sourceforge.net/obi/?rev=361&view=rev
Author:   alanr
Date:     2008-03-02 00:34:13 -0800 (Sun, 02 Mar 2008)

Log Message:
-----------
Move this (still experimental) in to sourcecodes

Added Paths:
-----------
    branchDevelopment/trunk/sourcecodes/gather-class-uris.pl

Removed Paths:
-------------
    branchDevelopment/trunk/gather-class-uris.pl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [379] branchDevelopment/trunk

From: <al...@us...> - 2008-03-05 04:36:56

Revision: 379
          http://obi.svn.sourceforge.net/obi/?rev=379&view=rev
Author:   alanr
Date:     2008-03-04 20:36:57 -0800 (Tue, 04 Mar 2008)

Log Message:
-----------
Add labels for some classes
Chosen policy for uris
Move classes tagged obsolete in Role.owl to Obsolete.owl

Modified Paths:
--------------
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/sourcecodes/modify-uris.pl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [380] branchDevelopment/trunk

From: <al...@us...> - 2008-03-05 04:56:59

Revision: 380
          http://obi.svn.sourceforge.net/obi/?rev=380&view=rev
Author:   alanr
Date:     2008-03-04 20:57:03 -0800 (Tue, 04 Mar 2008)

Log Message:
-----------
Biomateral: Use CL_0000000 (Cell from CL) instead of OBI_100009 cell entity (import_from_Cell_Ontology)
Fix bug in bug fix in modify-uris.pl

Modified Paths:
--------------
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/sourcecodes/modify-uris.pl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [381] branchDevelopment/trunk

From: <al...@us...> - 2008-03-05 05:21:05

Revision: 381
          http://obi.svn.sourceforge.net/obi/?rev=381&view=rev
Author:   alanr
Date:     2008-03-04 21:20:37 -0800 (Tue, 04 Mar 2008)

Log Message:
-----------
Move labware from Instrument.owl to Obsolete.owl

Modified Paths:
--------------
    branchDevelopment/trunk/InstrumentAndPart.owl
    branchDevelopment/trunk/Obsolete.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [400] branchDevelopment/trunk

From: <al...@us...> - 2008-03-08 14:44:39

Revision: 400
          http://obi.svn.sourceforge.net/obi/?rev=400&view=rev
Author:   alanr
Date:     2008-03-08 06:44:27 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
xsd:string -> xml:lang=en

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/DataTransformation.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/InstrumentAndPart.owl
    branchDevelopment/trunk/OBI-Function.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/Quality.owl
    branchDevelopment/trunk/Relations.owl
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/TheRest.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [406] branchDevelopment/trunk

From: <al...@us...> - 2008-03-08 21:28:05

Revision: 406
          http://obi.svn.sourceforge.net/obi/?rev=406&view=rev
Author:   alanr
Date:     2008-03-08 13:28:09 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
new purl.obofoundry.org based ids. Instance-based curation status

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/DataTransformation.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/InstrumentAndPart.owl
    branchDevelopment/trunk/OBI-Function.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/Quality.owl
    branchDevelopment/trunk/Relations.owl
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/TheRest.owl
    branchDevelopment/trunk/external.owl
    branchDevelopment/trunk/externalDerived.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [409] branchDevelopment/trunk

From: <al...@us...> - 2008-03-09 00:47:52

Revision: 409
          http://obi.svn.sourceforge.net/obi/?rev=409&view=rev
Author:   alanr
Date:     2008-03-08 16:47:57 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
newids take 2

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/DataTransformation.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/InstrumentAndPart.owl
    branchDevelopment/trunk/OBI-Function.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/Quality.owl
    branchDevelopment/trunk/Relations.owl
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/TheRest.owl
    branchDevelopment/trunk/external.owl
    branchDevelopment/trunk/externalDerived.owl
    branchDevelopment/trunk/obi-owl-full.owl
    branchDevelopment/trunk/obi.owl.template
    branchDevelopment/trunk/obi.repository.template
    branchDevelopment/trunk/obi.repository.template.pc
    branchDevelopment/trunk/sourcecodes/modify-uris.pl

Added Paths:
-----------
    branchDevelopment/trunk/development-examples/obi-liver.owl
    branchDevelopment/trunk/development-examples/reasoner-example-workshop-2007-July.owl
    branchDevelopment/trunk/older/Plan.owl
    branchDevelopment/trunk/older/Role-staging.owl
    branchDevelopment/trunk/older/formats.owl
    branchDevelopment/trunk/sourcecodes/qc-queries.lisp

Removed Paths:
-------------
    branchDevelopment/trunk/Plan.owl
    branchDevelopment/trunk/Role-staging.owl
    branchDevelopment/trunk/obi-liver.owl
    branchDevelopment/trunk/reasoner-example-workshop-2007-July.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [410] branchDevelopment/trunk

From: <al...@us...> - 2008-03-09 04:48:07

Revision: 410
          http://obi.svn.sourceforge.net/obi/?rev=410&view=rev
Author:   alanr
Date:     2008-03-08 20:48:13 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
Biomaterial.owl biomaterials (deprecated) gets "_" in front of it's name
PlanAndPlannedProcess.owl 	two stray classes were in the geneontology namespace
sourcecodes/obi.asd		like a java build.xml file for lisp
sourcecodes/qc-queries.lisp 	some queries useful before release
sourcecodes/add-disjoints.lisp	compute the disjoint classes and write disjoints.owl
sourcecodes/uri-report.lisp	get a list of uris and their types, for assigning ids
disjoints.owl			Computed disjoint class statements

Modified Paths:
--------------
    branchDevelopment/trunk/Biomaterial.owl
    branchDevelopment/trunk/PlanAndPlannedProcess.owl
    branchDevelopment/trunk/sourcecodes/qc-queries.lisp
    branchDevelopment/trunk/sourcecodes/uri-report.lisp

Added Paths:
-----------
    branchDevelopment/trunk/disjoints.owl
    branchDevelopment/trunk/sourcecodes/add-disjoints.lisp
    branchDevelopment/trunk/sourcecodes/obi.asd


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [415] branchDevelopment/trunk

From: <al...@us...> - 2008-03-09 06:31:40

Revision: 415
          http://obi.svn.sourceforge.net/obi/?rev=415&view=rev
Author:   alanr
Date:     2008-03-08 22:31:45 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
disjoints to non-obi classes too

Modified Paths:
--------------
    branchDevelopment/trunk/disjoints.owl
    branchDevelopment/trunk/sourcecodes/add-disjoints.lisp


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [416] branchDevelopment/trunk

From: <al...@us...> - 2008-03-09 06:43:27

Revision: 416
          http://obi.svn.sourceforge.net/obi/?rev=416&view=rev
Author:   alanr
Date:     2008-03-08 22:43:32 -0800 (Sat, 08 Mar 2008)

Log Message:
-----------
update pprj to display labels, show curation status. Minor fix to AnnotationProperty (lost earlier CurationStatus -> subclassof information content entity

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/obi.pprj.template


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [417] branchDevelopment/trunk

From: <al...@us...> - 2008-03-10 03:44:38

Revision: 417
          http://obi.svn.sourceforge.net/obi/?rev=417&view=rev
Author:   alanr
Date:     2008-03-09 20:44:41 -0700 (Sun, 09 Mar 2008)

Log Message:
-----------
Added missing rdfs:labels

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/Role.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [418] branchDevelopment/trunk

From: <bb...@us...> - 2008-03-10 03:46:59

Revision: 418
          http://obi.svn.sourceforge.net/obi/?rev=418&view=rev
Author:   bbug
Date:     2008-03-09 20:46:58 -0700 (Sun, 09 Mar 2008)

Log Message:
-----------
Fixed the Revision svn-keyword so it should work now.

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/OBI-Function.owl
    branchDevelopment/trunk/Obsolete.owl
    branchDevelopment/trunk/Quality.owl
    branchDevelopment/trunk/Relations.owl
    branchDevelopment/trunk/TheRest.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [419] branchDevelopment/trunk

From: <al...@us...> - 2008-03-10 03:47:34

Revision: 419
          http://obi.svn.sourceforge.net/obi/?rev=419&view=rev
Author:   alanr
Date:     2008-03-09 20:47:37 -0700 (Sun, 09 Mar 2008)

Log Message:
-----------
Added missing rdfs:labels take 2, add qc-query missing-label

Modified Paths:
--------------
    branchDevelopment/trunk/Role.owl
    branchDevelopment/trunk/sourcecodes/qc-queries.lisp


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [435] branchDevelopment/trunk

From: <bb...@us...> - 2008-03-10 16:21:13

Revision: 435
          http://obi.svn.sourceforge.net/obi/?rev=435&view=rev
Author:   bbug
Date:     2008-03-10 09:21:18 -0700 (Mon, 10 Mar 2008)

Log Message:
-----------
All DENRIE entries now have a preferred term value and a curation status (nearly all are metadata incomplete).

Modified Paths:
--------------
    branchDevelopment/trunk/AnnotationProperty.owl
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/TheRest.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [460] branchDevelopment/trunk

From: <p_r...@us...> - 2008-03-28 14:53:05

Revision: 460
          http://obi.svn.sourceforge.net/obi/?rev=460&view=rev
Author:   p_rocca_serra
Date:     2008-03-28 07:52:59 -0700 (Fri, 28 Mar 2008)

Log Message:
-----------
testing import from CHEBI for 'chemical entity' and 'tris' classes

Modified Paths:
--------------
    branchDevelopment/trunk/external.owl
    branchDevelopment/trunk/externalDerived.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [474] branchDevelopment/trunk

From: <al...@us...> - 2008-04-01 18:15:06

Revision: 474
          http://obi.svn.sourceforge.net/obi/?rev=474&view=rev
Author:   alanr
Date:     2008-04-01 11:15:10 -0700 (Tue, 01 Apr 2008)

Log Message:
-----------
don't show sparql for qc queries

Modified Paths:
--------------
    branchDevelopment/trunk/sourcecodes/qc-queries.lisp

Property Changed:
----------------
    branchDevelopment/trunk/


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [485] branchDevelopment/trunk

From: <al...@us...> - 2008-04-03 12:41:55

Revision: 485
          http://obi.svn.sourceforge.net/obi/?rev=485&view=rev
Author:   alanr
Date:     2008-04-03 05:41:58 -0700 (Thu, 03 Apr 2008)

Log Message:
-----------
Factor out instances of data format specification into file DataFormatSpecification.owl. Update your .repository and .owl files to add it

Modified Paths:
--------------
    branchDevelopment/trunk/DigitalEntityPlus.owl
    branchDevelopment/trunk/obi.owl.template
    branchDevelopment/trunk/obi.repository.template
    branchDevelopment/trunk/obi.repository.template.pc

Added Paths:
-----------
    branchDevelopment/trunk/DataFormatSpecification.owl


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [505] branchDevelopment/trunk

From: <al...@us...> - 2008-04-07 04:51:28

Revision: 505
          http://obi.svn.sourceforge.net/obi/?rev=505&view=rev
Author:   alanr
Date:     2008-04-06 21:51:27 -0700 (Sun, 06 Apr 2008)

Log Message:
-----------
continue svn reorg

Removed Paths:
-------------
    branchDevelopment/trunk/development-examples/NoCollectiveConstitutes.owl
    branchDevelopment/trunk/development-examples/TheOntologyOfObjects/
    branchDevelopment/trunk/development-examples/bjoern-petri-dish.owl
    branchDevelopment/trunk/development-examples/collectivity-demo.owl
    branchDevelopment/trunk/development-examples/obi-liver.owl
    branchDevelopment/trunk/development-examples/petri-dish.owl
    branchDevelopment/trunk/development-examples/reasoner-example-workshop-2007-July.owl
    branchDevelopment/trunk/sourcecodes/OBIReleaseClient.java
    branchDevelopment/trunk/sourcecodes/OBITools/
    branchDevelopment/trunk/sourcecodes/OBIreleaseCheck.sh
    branchDevelopment/trunk/sourcecodes/add-disjoints.lisp
    branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
    branchDevelopment/trunk/sourcecodes/gather-class-uris.pl
    branchDevelopment/trunk/sourcecodes/get-svn-revision.sh
    branchDevelopment/trunk/sourcecodes/join-branches.pl
    branchDevelopment/trunk/sourcecodes/loading-obi-into-neurocommons.txt
    branchDevelopment/trunk/sourcecodes/make-all-in-one.pl
    branchDevelopment/trunk/sourcecodes/modify-uris.pl
    branchDevelopment/trunk/sourcecodes/new-purls.lisp
    branchDevelopment/trunk/sourcecodes/normalize-namespaces.pl
    branchDevelopment/trunk/sourcecodes/obi.asd
    branchDevelopment/trunk/sourcecodes/qc-queries.lisp
    branchDevelopment/trunk/sourcecodes/sheet-importer.lisp
    branchDevelopment/trunk/sourcecodes/uri-report.lisp
    branchDevelopment/trunk/sourcecodes/write-purls.lisp
    branchDevelopment/trunk/sourcecodes/xl2owl/


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

[Obi-svn-commit] SF.net SVN: obi: [507] branchDevelopment/trunk

From: <al...@us...> - 2008-04-07 04:56:15

Revision: 507
          http://obi.svn.sourceforge.net/obi/?rev=507&view=rev
Author:   alanr
Date:     2008-04-06 21:56:17 -0700 (Sun, 06 Apr 2008)

Log Message:
-----------
continue svn reorg

Removed Paths:
-------------
    branchDevelopment/trunk/older/
    branchDevelopment/trunk/spreadsheets-exported/


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.

<< < 1 2 3 (Page 3 of 3)