Menu
▾
▴
obi-svn-commit
|
From: <dan...@us...> - 2007-07-30 16:18:46
|
Revision: 120
http://obi.svn.sourceforge.net/obi/?rev=120&view=rev
Author: daniel_schober
Date: 2007-07-30 09:18:45 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
Changed forceReadOnly property for biomaterial branch in pc repository template file to forceReadOnly=true
implemented the [branchname]_temp convention for container classes
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/obi.repository.template.pc
Property Changed:
----------------
branchDevelopment/trunk/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bb...@us...> - 2007-07-30 23:28:10
|
Revision: 122
http://obi.svn.sourceforge.net/obi/?rev=122&view=rev
Author: bbug
Date: 2007-07-30 16:28:13 -0700 (Mon, 30 Jul 2007)
Log Message:
-----------
Combineded the old instrument_function class from TheRest.owl with the newer version under OBI-Function.owl that includes the minimal metadata.
Modified Paths:
--------------
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/TheRest.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2007-08-07 09:42:59
|
Revision: 123
http://obi.svn.sourceforge.net/obi/?rev=123&view=rev
Author: alanr
Date: 2007-08-07 02:43:00 -0700 (Tue, 07 Aug 2007)
Log Message:
-----------
Update OBI to use beta bfo 1.1 (addition of generically dependent
continuant, removal of covering axiom for realizables)
This requires changes to ro_bfo_bridge, now forked to
ro_bfo_bridge11.owl in our svn.
All the files that used the bfo 1.0 namespace needed to be updated to
the 1.1 namespace
OBIs definition of generically dependent continuant has been removed
and references to it changed back to BFO.
New script make-all-in-one.pl. This makes a single ontology that
doesn't import anything, including all the external ontologies. That's
important because for the moment there isn't any bfo 1.1 ro_bfo_bridge
to import.
This required a couple more changes. Minor: Addition of a namespace to TheRest.owl.
Major, modifying protege.owl so that full URIs were used everywhere, in order that
the combination script didn't have to do more work.
People who've already downloaded and are using the svn will need to
update their obi.repository and obi.owl.
Obi.repository should refer to bfo11.owl instead of bfo.owl and
ro_bfo_bridge11.owl instead of ro_bfo_bridge.owl.
Obi.owl should refer to http://www.ifomis.org/bfo/1.1 versus http://www.ifomis.org/bfo/1.0 and
http://purl.org/obo/owl/ro_bfo_bridge/1.1 versus http://purl.org/obo/owl/ro_bfo_bridge
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/ProtocolApplication.owl
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
branchDevelopment/trunk/external/protege.owl
branchDevelopment/trunk/obi-lsw.owl.template
branchDevelopment/trunk/obi.repository.template
branchDevelopment/trunk/obi.repository.template.pc
Added Paths:
-----------
branchDevelopment/trunk/bfo/bfo11.owl
branchDevelopment/trunk/external/ro_bfo_bridge11.owl
branchDevelopment/trunk/make-all-in-one.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-08-17 16:45:59
|
Revision: 136
http://obi.svn.sourceforge.net/obi/?rev=136&view=rev
Author: daniel_schober
Date: 2007-08-17 09:46:00 -0700 (Fri, 17 Aug 2007)
Log Message:
-----------
DS: I have put the Perl sources into a corresponding folder. An instructions file how to use these should be generated in there too.
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/InstrumentAndPart.owl
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/
branchDevelopment/trunk/sourcecodes/join-branches.pl
branchDevelopment/trunk/sourcecodes/make-all-in-one.pl
Removed Paths:
-------------
branchDevelopment/trunk/join-branches.pl
branchDevelopment/trunk/make-all-in-one.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2007-08-30 10:12:19
|
Revision: 140
http://obi.svn.sourceforge.net/obi/?rev=140&view=rev
Author: allysonlister
Date: 2007-08-30 03:11:55 -0700 (Thu, 30 Aug 2007)
Log Message:
-----------
Moved development-examples out of the top-level dirs, and into trunk where it belongs. See SVN docs for information on best-practice directory structure for subversion projects.
Added Paths:
-----------
branchDevelopment/trunk/development-examples/
branchDevelopment/trunk/development-examples/TheOntologyOfObjects/
branchDevelopment/trunk/development-examples/TheOntologyOfObjects/Object.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-09-25 11:33:17
|
Revision: 151
http://obi.svn.sourceforge.net/obi/?rev=151&view=rev
Author: daniel_schober
Date: 2007-09-25 04:33:21 -0700 (Tue, 25 Sep 2007)
Log Message:
-----------
Three new terms submitted from PA Branch were included and their definitions refined.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/lastac_autoID/default.properties.InstrumentAndPart
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-10-16 14:37:37
|
Revision: 162
http://obi.svn.sourceforge.net/obi/?rev=162&view=rev
Author: daniel_schober
Date: 2007-10-16 07:37:40 -0700 (Tue, 16 Oct 2007)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/Plan.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-03 04:06:13
|
Revision: 230
http://obi.svn.sourceforge.net/obi/?rev=230&view=rev
Author: alanr
Date: 2008-01-02 20:06:18 -0800 (Wed, 02 Jan 2008)
Log Message:
-----------
source and code for converting denrie and role branches to owl. Role not finished yet
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/sheet-importer.lisp
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
branchDevelopment/trunk/spreadsheets-imported/
branchDevelopment/trunk/spreadsheets-imported/denrie-2007-12-20.txt
branchDevelopment/trunk/spreadsheets-imported/role-branch-2007-11-28.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-04 16:56:31
|
Revision: 232
http://obi.svn.sourceforge.net/obi/?rev=232&view=rev
Author: alanr
Date: 2008-01-04 08:56:23 -0800 (Fri, 04 Jan 2008)
Log Message:
-----------
More work on role
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
branchDevelopment/trunk/spreadsheets-imported/role-branch-2007-11-28.txt
Added Paths:
-----------
branchDevelopment/trunk/Role-staging.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-04 17:19:48
|
Revision: 233
http://obi.svn.sourceforge.net/obi/?rev=233&view=rev
Author: alanr
Date: 2008-01-04 09:19:53 -0800 (Fri, 04 Jan 2008)
Log Message:
-----------
lowercase class names
Modified Paths:
--------------
branchDevelopment/trunk/Role-staging.owl
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-15 04:42:12
|
Revision: 253
http://obi.svn.sourceforge.net/obi/?rev=253&view=rev
Author: alanr
Date: 2008-01-14 20:42:15 -0800 (Mon, 14 Jan 2008)
Log Message:
-----------
temporary location for ro_bfo_bridge 1.1
Modified Paths:
--------------
branchDevelopment/trunk/obi.owl.template
branchDevelopment/trunk/sourcecodes/join-branches.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-01-19 02:33:32
|
Revision: 277
http://obi.svn.sourceforge.net/obi/?rev=277&view=rev
Author: bjoernpeters
Date: 2008-01-18 18:33:37 -0800 (Fri, 18 Jan 2008)
Log Message:
-----------
Results from todays protocol application and biomaterial call. Includes the move of 'investigation' into the protocol application branch from 'TheRest.owl'.
Modified Paths:
--------------
branchDevelopment/trunk/ProtocolApplication.owl
branchDevelopment/trunk/TheRest.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-28 21:55:09
|
Revision: 281
http://obi.svn.sourceforge.net/obi/?rev=281&view=rev
Author: alanr
Date: 2008-01-28 13:55:06 -0800 (Mon, 28 Jan 2008)
Log Message:
-----------
Some changes on the plan.
Moved some stuff that had crept into obi.owl into relations
Made instances of data format specification, to make a point
Cleaned up hierarchy of denrie, hoping for the best.
Dithered about information_entity's name being "plan". I think I haven't succeeded yet.
Modified Paths:
--------------
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/Relations.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-29 22:26:28
|
Revision: 283
http://obi.svn.sourceforge.net/obi/?rev=283&view=rev
Author: alanr
Date: 2008-01-29 14:26:33 -0800 (Tue, 29 Jan 2008)
Log Message:
-----------
plan branch review updates made during vancouver meeting 2008
Modified Paths:
--------------
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/ProtocolApplication.owl
branchDevelopment/trunk/Role.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-30 00:07:33
|
Revision: 284
http://obi.svn.sourceforge.net/obi/?rev=284&view=rev
Author: alanr
Date: 2008-01-29 16:07:37 -0800 (Tue, 29 Jan 2008)
Log Message:
-----------
Removed Number.
Had another go at defining data set. Not good enough yet. In
particular, how to differentiate from things like matrices. Maybe data set should be aggregate of measurements or something.
Modified Paths:
--------------
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/Obsolete.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-31 07:25:19
|
Revision: 286
http://obi.svn.sourceforge.net/obi/?rev=286&view=rev
Author: alanr
Date: 2008-01-30 23:25:21 -0800 (Wed, 30 Jan 2008)
Log Message:
-----------
Merge Plan.owl into ProtocolApplication.owl then renamed PlanAndPlannedProcess.owl
Adjust the templates to match.
****************************************************************
Note: You will need to adjust your obi.owl and obi.repository to
compensate for the name change Remove Plan.owl from all, and change
"ProtocolApplication" to "PlanAndPlannedProcess"
****************************************************************
Modified Paths:
--------------
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/obi.owl.template
branchDevelopment/trunk/obi.repository.template
branchDevelopment/trunk/obi.repository.template.pc
branchDevelopment/trunk/sourcecodes/make-all-in-one.pl
Added Paths:
-----------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
Removed Paths:
-------------
branchDevelopment/trunk/ProtocolApplication.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bb...@us...> - 2008-01-31 18:18:23
|
Revision: 289
http://obi.svn.sourceforge.net/obi/?rev=289&view=rev
Author: bbug
Date: 2008-01-31 10:18:08 -0800 (Thu, 31 Jan 2008)
Log Message:
-----------
depricated ALL current OBI Function classes EXCEPT <OBI function> and <instrument function> until the PlanAndPlannedProcess branch has produced a set of canonical instrument processes for review as putative bfo:functions.
Modified Paths:
--------------
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-02-08 17:08:02
|
Revision: 294
http://obi.svn.sourceforge.net/obi/?rev=294&view=rev
Author: alanr
Date: 2008-02-08 09:08:01 -0800 (Fri, 08 Feb 2008)
Log Message:
-----------
recover roles from previous version. Add protocol_application_role, move treated_role from PlanAndPlannedProcess to Role
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Role.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-02-08 18:52:05
|
Revision: 296
http://obi.svn.sourceforge.net/obi/?rev=296&view=rev
Author: alanr
Date: 2008-02-08 10:52:08 -0800 (Fri, 08 Feb 2008)
Log Message:
-----------
'material' changes per biomaterial call. biomaterial and artefact_object are now defined classes.
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jgr...@us...> - 2008-02-15 04:37:10
|
Revision: 323
http://obi.svn.sourceforge.net/obi/?rev=323&view=rev
Author: jgreenbaum
Date: 2008-02-14 20:37:15 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
* Added feature to xl2owl to allow removal of empty annotation properties
** updated binaries as well
* Removed empty annotation properties, and branch from PlanAndPlannedProcess.owlp
-- line, and those below, will be ignored--
M trunk/sourcecodes/xl2owl/xl2owl.pl
M trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
M trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
M trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
M trunk/sourcecodes/xl2owl/README
M trunk/PlanAndPlannedProcess.owl
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/sourcecodes/xl2owl/README
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-02-15 18:49:42
|
Revision: 325
http://obi.svn.sourceforge.net/obi/?rev=325&view=rev
Author: alanr
Date: 2008-02-15 10:49:47 -0800 (Fri, 15 Feb 2008)
Log Message:
-----------
Some refinements of external.
Removed extra class definition of material (harmless)
Moved importedFrom to AnnotationProperties.owl
Added rdfs:label to externalDerived.owl
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-02-15 19:00:27
|
Revision: 326
http://obi.svn.sourceforge.net/obi/?rev=326&view=rev
Author: alanr
Date: 2008-02-15 11:00:31 -0800 (Fri, 15 Feb 2008)
Log Message:
-----------
Replaced sparql generated RDF element with our standard one. This will
have to be done as postprocess if we used sparql to define this file
Added externalDerived to template, obi.owl
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
branchDevelopment/trunk/obi.owl.template
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bb...@us...> - 2008-02-28 00:02:25
|
Revision: 346
http://obi.svn.sourceforge.net/obi/?rev=346&view=rev
Author: bbug
Date: 2008-02-27 16:02:30 -0800 (Wed, 27 Feb 2008)
Log Message:
-----------
Curation status enumeration class instances added to the AnnotationProperties file. Also added an import for protege-dc, since it defines DC RDF properties as owl:AnnotationProperties. Without protege-dc, the file is not OWL DL unless the DC properties used are explicitly declared as owl:AnnotationProperties.
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/OBI-Function.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-02-29 15:04:26
|
Revision: 349
http://obi.svn.sourceforge.net/obi/?rev=349&view=rev
Author: alanr
Date: 2008-02-29 07:04:30 -0800 (Fri, 29 Feb 2008)
Log Message:
-----------
OBI_264 fix, OBI_900004 fix.
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/TheRest.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-03-02 04:04:56
|
Revision: 358
http://obi.svn.sourceforge.net/obi/?rev=358&view=rev
Author: alanr
Date: 2008-03-01 20:05:00 -0800 (Sat, 01 Mar 2008)
Log Message:
-----------
Addressing tracker item 1905051 http://sourceforge.net/tracker/index.php?func=detail&aid=1905051&group_id=177891&atid=886178
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
Thanks for helping keep SourceForge clean.
X