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From: <al...@us...> - 2009-08-12 04:48:23
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Revision: 1961
http://obi.svn.sourceforge.net/obi/?rev=1961&view=rev
Author: alanr
Date: 2009-08-12 04:48:15 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
add iao/external, iao/externalDerived
Modified Paths:
--------------
trunk/src/ontology/branches/obi.repository.template
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From: <al...@us...> - 2009-08-12 03:48:40
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Revision: 1960
http://obi.svn.sourceforge.net/obi/?rev=1960&view=rev
Author: alanr
Date: 2009-08-12 03:48:33 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
from trunk
Modified Paths:
--------------
releases/2009-07-31/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-08-12 03:47:50
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Revision: 1959
http://obi.svn.sourceforge.net/obi/?rev=1959&view=rev
Author: alanr
Date: 2009-08-12 03:47:42 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
not: equivalentClass has_specified_input some organism. not: nucleic acid hybridization achieves assay objective
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-08-11 23:09:03
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Revision: 1958
http://obi.svn.sourceforge.net/obi/?rev=1958&view=rev
Author: alanr
Date: 2009-08-11 23:08:56 +0000 (Tue, 11 Aug 2009)
Log Message:
-----------
add <?xml version="1.0"?> top top
Modified Paths:
--------------
trunk/src/ontology/branches/instances/dataTransformationInstances.owl
trunk/src/ontology/branches/instances/organizationInstances.owl
trunk/src/ontology/branches/instances/softwareInstances.owl
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From: <al...@us...> - 2009-08-10 15:48:23
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Revision: 1957
http://obi.svn.sourceforge.net/obi/?rev=1957&view=rev
Author: alanr
Date: 2009-08-10 15:48:15 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
use quality-assurance.owl . remove entity, obsoleteclass -> out of obsolete.owl
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
trunk/src/ontology/branches/obil.owl
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From: <al...@us...> - 2009-08-10 15:44:25
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Revision: 1956
http://obi.svn.sourceforge.net/obi/?rev=1956&view=rev
Author: alanr
Date: 2009-08-10 15:44:14 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
move disjoint of obsoleteclass and entity to this file, and collect
here other assertions we want to make for the purposes of doing QC,
but not necessarily release.
Added Paths:
-----------
trunk/src/ontology/branches/quality-assurance.owl
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From: <al...@us...> - 2009-08-10 07:20:15
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Revision: 1955
http://obi.svn.sourceforge.net/obi/?rev=1955&view=rev
Author: alanr
Date: 2009-08-10 07:20:09 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
minimize
Modified Paths:
--------------
trunk/src/examples/development/imports/a.owl
trunk/src/examples/development/imports/b.owl
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From: <al...@us...> - 2009-08-10 07:16:36
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Revision: 1954
http://obi.svn.sourceforge.net/obi/?rev=1954&view=rev
Author: alanr
Date: 2009-08-10 07:16:29 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
remove base
Modified Paths:
--------------
trunk/src/examples/development/imports/b.owl
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From: <al...@us...> - 2009-08-10 07:13:34
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Revision: 1953
http://obi.svn.sourceforge.net/obi/?rev=1953&view=rev
Author: alanr
Date: 2009-08-10 07:13:28 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
alan's experiment
Added Paths:
-----------
trunk/src/examples/development/imports/
trunk/src/examples/development/imports/a.owl
trunk/src/examples/development/imports/b.owl
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From: <al...@us...> - 2009-08-10 06:26:07
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Revision: 1952
http://obi.svn.sourceforge.net/obi/?rev=1952&view=rev
Author: alanr
Date: 2009-08-10 06:25:59 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
remove protege banner on bottom. was *not* written by protege 3.
Modified Paths:
--------------
trunk/src/ontology/branches/obil.owl
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From: <al...@us...> - 2009-08-10 06:25:40
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Revision: 1951
http://obi.svn.sourceforge.net/obi/?rev=1951&view=rev
Author: alanr
Date: 2009-08-10 06:25:31 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
import iao/external.owl, iao/externalDerived.owl (oh - *that's* why)
Modified Paths:
--------------
trunk/src/ontology/branches/obil.owl
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From: <al...@us...> - 2009-08-10 06:17:26
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Revision: 1950
http://obi.svn.sourceforge.net/obi/?rev=1950&view=rev
Author: alanr
Date: 2009-08-10 06:17:18 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
add disjoint to bfo:entity
Modified Paths:
--------------
releases/2009-07-31/branches/Obsolete.owl
trunk/src/ontology/branches/Obsolete.owl
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From: <al...@us...> - 2009-08-10 06:15:57
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Revision: 1949
http://obi.svn.sourceforge.net/obi/?rev=1949&view=rev
Author: alanr
Date: 2009-08-10 06:15:48 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
cloning insert role(OBI_0000416) uses obsolete_recombinant plasmid construction -> remove restriction realized_by some ...
Modified Paths:
--------------
releases/2009-07-31/branches/Role.owl
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From: <al...@us...> - 2009-08-10 06:15:04
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Revision: 1948
http://obi.svn.sourceforge.net/obi/?rev=1948&view=rev
Author: alanr
Date: 2009-08-10 06:14:54 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
cloning insert role(OBI_0000416) uses obsolete_recombinant plasmid construction -> remove restriction realized_by some ...
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-08-10 05:59:34
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Revision: 1947
http://obi.svn.sourceforge.net/obi/?rev=1947&view=rev
Author: alanr
Date: 2009-08-10 05:59:27 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
remove use of obsolete_digital document, obsolete_digital entity, obsolete_binary digital, replacing all with information content entity until there is a more appropriate and specific class to use
Modified Paths:
--------------
releases/2009-07-31/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
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From: <al...@us...> - 2009-08-10 05:53:00
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Revision: 1946
http://obi.svn.sourceforge.net/obi/?rev=1946&view=rev
Author: alanr
Date: 2009-08-10 05:52:50 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
remove use of obsolete environmental matter in metabolite profiling. Specified input just specimen now.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-08-10 05:52:45
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Revision: 1945
http://obi.svn.sourceforge.net/obi/?rev=1945&view=rev
Author: alanr
Date: 2009-08-10 05:52:37 +0000 (Mon, 10 Aug 2009)
Log Message:
-----------
remove use of obsolete environmental matter in metabolite profiling. Specified input just specimen now.
Modified Paths:
--------------
releases/2009-07-31/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-08-09 07:27:13
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Revision: 1944
http://obi.svn.sourceforge.net/obi/?rev=1944&view=rev
Author: alanr
Date: 2009-08-09 07:27:05 +0000 (Sun, 09 Aug 2009)
Log Message:
-----------
some sorting through the disease terms requested by James/Helen.
Not done yet. Some issues - mailed them for more info.
Added Paths:
-----------
trunk/src/ontology/spreadsheets/in/efo-disease-list.txt
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From: <mco...@us...> - 2009-08-07 23:15:41
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Revision: 1943
http://obi.svn.sourceforge.net/obi/?rev=1943&view=rev
Author: mcourtot
Date: 2009-08-07 23:15:31 +0000 (Fri, 07 Aug 2009)
Log Message:
-----------
updated to correct path for instances files and correct import of IAO
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <mco...@us...> - 2009-08-07 15:28:11
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Revision: 1942
http://obi.svn.sourceforge.net/obi/?rev=1942&view=rev
Author: mcourtot
Date: 2009-08-07 15:28:04 +0000 (Fri, 07 Aug 2009)
Log Message:
-----------
review
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master-shortened.doc
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From: <al...@us...> - 2009-08-06 23:14:32
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Revision: 1941
http://obi.svn.sourceforge.net/obi/?rev=1941&view=rev
Author: alanr
Date: 2009-08-06 23:14:22 +0000 (Thu, 06 Aug 2009)
Log Message:
-----------
insane alan
Removed Paths:
-------------
trunk/src/ontology/branches/dataTransformationInstances.owl
trunk/src/ontology/branches/organizationInstances.owl
trunk/src/ontology/branches/softwareInstances.owl
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From: <al...@us...> - 2009-08-06 23:11:44
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Revision: 1940
http://obi.svn.sourceforge.net/obi/?rev=1940&view=rev
Author: alanr
Date: 2009-08-06 23:11:37 +0000 (Thu, 06 Aug 2009)
Log Message:
-----------
insane protege 4
Added Paths:
-----------
trunk/src/ontology/branches/dataTransformationInstances.owl
trunk/src/ontology/branches/organizationInstances.owl
trunk/src/ontology/branches/softwareInstances.owl
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From: <al...@us...> - 2009-08-06 18:46:49
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Revision: 1939
http://obi.svn.sourceforge.net/obi/?rev=1939&view=rev
Author: alanr
Date: 2009-08-06 18:46:41 +0000 (Thu, 06 Aug 2009)
Log Message:
-----------
print id of obsolete term too per mc request
Modified Paths:
--------------
trunk/src/tools/build/obsolete-report.lisp
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From: <mco...@us...> - 2009-08-06 18:12:06
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Revision: 1938
http://obi.svn.sourceforge.net/obi/?rev=1938&view=rev
Author: mcourtot
Date: 2009-08-06 18:11:58 +0000 (Thu, 06 Aug 2009)
Log Message:
-----------
removed wrong curation status instances
Modified Paths:
--------------
releases/2009-07-31/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-08-06 18:10:31
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Revision: 1937
http://obi.svn.sourceforge.net/obi/?rev=1937&view=rev
Author: mcourtot
Date: 2009-08-06 18:10:24 +0000 (Thu, 06 Aug 2009)
Log Message:
-----------
removed wrong curation status instances
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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