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From: <jzh...@us...> - 2015-06-01 17:17:16
|
Revision: 3989
http://sourceforge.net/p/obi/code/3989
Author: jzheng24
Date: 2015-06-01 17:17:14 +0000 (Mon, 01 Jun 2015)
Log Message:
-----------
textual entity removed from Figure 1 based on Bjoern's suggestion
Modified Paths:
--------------
trunk/docs/papers/release/Figure 1.pptx
trunk/docs/papers/release/Manuscript 2014.doc
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From: <jzh...@us...> - 2015-06-01 17:02:41
|
Revision: 3988
http://sourceforge.net/p/obi/code/3988
Author: jzheng24
Date: 2015-06-01 17:02:39 +0000 (Mon, 01 Jun 2015)
Log Message:
-----------
correct typo in the manuscript, UBRON->UBERON
minor edits on Figure 2
Modified Paths:
--------------
trunk/docs/papers/release/Figure 2.ppt
trunk/docs/papers/release/Manuscript 2014.doc
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From: <jzh...@us...> - 2015-05-29 21:51:51
|
Revision: 3987
http://sourceforge.net/p/obi/code/3987
Author: jzheng24
Date: 2015-05-29 21:51:50 +0000 (Fri, 29 May 2015)
Log Message:
-----------
Update Figure 1
Replaced Figure 1, added Figure 2 with minor changes, and added some comments and minor edits on the manuscript
Modified Paths:
--------------
trunk/docs/papers/release/Figure 1.pptx
trunk/docs/papers/release/Manuscript 2014.doc
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From: <jzh...@us...> - 2015-05-13 18:37:19
|
Revision: 3986
http://sourceforge.net/p/obi/code/3986
Author: jzheng24
Date: 2015-05-13 18:37:17 +0000 (Wed, 13 May 2015)
Log Message:
-----------
NIAID GSCID BRC view on OBI release version 20150413
Added Paths:
-----------
releases/NIAID-GSCID-BRC-view/20150413/
releases/NIAID-GSCID-BRC-view/20150413/NIAID-GSC-BRC.owl
releases/NIAID-GSCID-BRC-view/20150413/ontoDog inputs/
releases/NIAID-GSCID-BRC-view/20150413/ontoDog inputs/Ontodog-inputs.xlsx
releases/NIAID-GSCID-BRC-view/20150413/ontoDog inputs/Ontodog-inputs_fieldID.xlsx
releases/NIAID-GSCID-BRC-view/20150413/ontoDog outputs/
releases/NIAID-GSCID-BRC-view/20150413/ontoDog outputs/fieldID.owl
releases/NIAID-GSCID-BRC-view/20150413/ontoDog outputs/insubset.owl
releases/NIAID-GSCID-BRC-view/20150413/ontoDog outputs/label.owl
releases/NIAID-GSCID-BRC-view/20150413/ontoDog outputs/subset.owl
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From: <jam...@us...> - 2015-05-04 20:17:19
|
Revision: 3985
http://sourceforge.net/p/obi/code/3985
Author: jamesaoverton
Date: 2015-05-04 20:17:18 +0000 (Mon, 04 May 2015)
Log Message:
-----------
Updating 'Illumina HiSeq' terms
- updated existing HiSeq terms
- add number of flow cells and throughout to definition
- add 'Illumina' to primary label
- added OBI_0002048 'Illumina HiSeq 3000', fixes issue #758
- added OBI_0002049 'Illumina HiSeq 4000', fixes issue #759
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
Added Paths:
-----------
trunk/src/ontology/spreadsheets/new_ids/newIDs_20150504.tab
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From: <jam...@us...> - 2015-05-04 19:34:59
|
Revision: 3984
http://sourceforge.net/p/obi/code/3984
Author: jamesaoverton
Date: 2015-05-04 19:34:58 +0000 (Mon, 04 May 2015)
Log Message:
-----------
Stop including externals directory in releases; stop redirecting to protege-dc.owl in externals.
Modified Paths:
--------------
trunk/src/ontology/branches/catalog-v001.xml
trunk/src/tools/build/README.md
trunk/src/tools/build/build.xml
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From: <jam...@us...> - 2015-05-04 19:16:49
|
Revision: 3983
http://sourceforge.net/p/obi/code/3983
Author: jamesaoverton
Date: 2015-05-04 19:16:47 +0000 (Mon, 04 May 2015)
Log Message:
-----------
Committing OBI release 2015-04-13
Added Paths:
-----------
releases/2015-04-13/
releases/2015-04-13/README.txt
releases/2015-04-13/branches/
releases/2015-04-13/branches/OntoFox_inputs/
releases/2015-04-13/branches/OntoFox_inputs/ChEBI_input.txt
releases/2015-04-13/branches/OntoFox_inputs/GO_input.txt
releases/2015-04-13/branches/OntoFox_inputs/NCBITaxon_input.txt
releases/2015-04-13/branches/OntoFox_inputs/OBO_input.txt
releases/2015-04-13/branches/OntoFox_inputs/PATO_input.txt
releases/2015-04-13/branches/OntoFox_inputs/SO_input.txt
releases/2015-04-13/branches/OntoFox_inputs/UO_input.txt
releases/2015-04-13/branches/OntoFox_inputs/UO_input_instance.txt
releases/2015-04-13/branches/OntoFox_inputs/readme.txt
releases/2015-04-13/branches/OntoFox_outputs/
releases/2015-04-13/branches/OntoFox_outputs/ChEBI_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/GO_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/NCBITaxon_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/OBO_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/PATO_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/SO_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/UO_imports.owl
releases/2015-04-13/branches/OntoFox_outputs/UO_instance_imports.owl
releases/2015-04-13/branches/catalog-v001.xml
releases/2015-04-13/branches/doap.template
releases/2015-04-13/branches/external-byhand.owl
releases/2015-04-13/branches/obi.owl
releases/2015-04-13/docs/
releases/2015-04-13/docs/obi.tsv
releases/2015-04-13/docs/obi.txt
releases/2015-04-13/docs/obi_core.tsv
releases/2015-04-13/docs/obi_core.txt
releases/2015-04-13/docs/obi_iedb.tsv
releases/2015-04-13/docs/obi_iedb.txt
releases/2015-04-13/docs/obi_isa.tsv
releases/2015-04-13/docs/obi_isa.txt
releases/2015-04-13/external/
releases/2015-04-13/external/protege-dc.owl
releases/2015-04-13/obi.owl
releases/2015-04-13/obi_core.owl
releases/2015-04-13/obi_iedb.owl
releases/2015-04-13/obi_isa.owl
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From: <jam...@us...> - 2015-04-13 20:38:42
|
Revision: 3982
http://sourceforge.net/p/obi/code/3982
Author: jamesaoverton
Date: 2015-04-13 20:38:35 +0000 (Mon, 13 Apr 2015)
Log Message:
-----------
Change OntoFox imports to use proper PURLs
- update imports in obi.owl
- update catalog-v100.xml file
- add "partial redirect" to purl.obolibrary.org
- imports should no longer require a copy of the catalog file
Modified Paths:
--------------
trunk/src/ontology/branches/catalog-v001.xml
trunk/src/ontology/branches/obi.owl
Property Changed:
----------------
trunk/src/ontology/branches/catalog-v001.xml
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From: <jam...@us...> - 2015-04-13 20:21:26
|
Revision: 3981
http://sourceforge.net/p/obi/code/3981
Author: jamesaoverton
Date: 2015-04-13 20:21:24 +0000 (Mon, 13 Apr 2015)
Log Message:
-----------
Switch to ROCore 2015-04-12
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-03-30 20:33:09
|
Revision: 3980
http://sourceforge.net/p/obi/code/3980
Author: jzheng24
Date: 2015-03-30 20:33:08 +0000 (Mon, 30 Mar 2015)
Log Message:
-----------
Fixed inconsistent issues. Details see tracker:
https://sourceforge.net/p/obi/obi-terms/747/
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-03-30 17:54:01
|
Revision: 3979
http://sourceforge.net/p/obi/code/3979
Author: jzheng24
Date: 2015-03-30 17:53:58 +0000 (Mon, 30 Mar 2015)
Log Message:
-----------
Converted OBI development version to use BFO 2 classes, RO core relations and latest release version of IAO
The files copied over the OWL files under
https://svn.code.sf.net/p/obi/code/releases/2015-03-17/BFOconversion/branches-BFO2
with SVN revision 3977.
The details of conversion process, see:
https://svn.code.sf.net/p/obi/code/releases/2015-03-17/BFOconversion/doc/notes.txt
4 inconsistent classes are found after conversion, see OBI tracker:
https://sourceforge.net/p/obi/obi-terms/747/
Revision Links:
--------------
http://sourceforge.net/p/obi/code/3977
Modified Paths:
--------------
trunk/src/ontology/branches/OntoFox_inputs/GO_input.txt
trunk/src/ontology/branches/OntoFox_outputs/GO_imports.owl
trunk/src/ontology/branches/catalog-v001.xml
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-03-25 00:24:23
|
Revision: 3978
http://sourceforge.net/p/obi/code/3978
Author: jzheng24
Date: 2015-03-25 00:24:22 +0000 (Wed, 25 Mar 2015)
Log Message:
-----------
inconsistency information
Added Paths:
-----------
releases/2015-03-17/BFOconversion/doc/BeadChip_inconsistency.png
releases/2015-03-17/BFOconversion/doc/inconsistencyClasses.txt
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From: <jzh...@us...> - 2015-03-24 23:40:27
|
Revision: 3977
http://sourceforge.net/p/obi/code/3977
Author: jzheng24
Date: 2015-03-24 23:40:26 +0000 (Tue, 24 Mar 2015)
Log Message:
-----------
OBI version using BFO 2 classes only and RO relations
Added Paths:
-----------
releases/2015-03-17/BFOconversion/
releases/2015-03-17/BFOconversion/branches-BFO2/
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/ChEBI_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/GO_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/NCBITaxon_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/OBO_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/PATO_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/SO_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/UO_input.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/UO_input_instance.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_inputs/readme.txt
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/ChEBI_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/GO_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/NCBITaxon_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/OBO_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/PATO_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/SO_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/UO_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/OntoFox_outputs/UO_instance_imports.owl
releases/2015-03-17/BFOconversion/branches-BFO2/catalog-v001.xml
releases/2015-03-17/BFOconversion/branches-BFO2/external-byhand.owl
releases/2015-03-17/BFOconversion/branches-BFO2/obi.owl
releases/2015-03-17/BFOconversion/doc/
releases/2015-03-17/BFOconversion/doc/inconsistency.png
releases/2015-03-17/BFOconversion/doc/mapping.txt
releases/2015-03-17/BFOconversion/doc/mapping.xlsx
releases/2015-03-17/BFOconversion/doc/notes.txt
releases/2015-03-17/BFOconversion/external/
releases/2015-03-17/BFOconversion/external/protege-dc.owl
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From: <jam...@us...> - 2015-03-24 17:31:57
|
Revision: 3976
http://sourceforge.net/p/obi/code/3976
Author: jamesaoverton
Date: 2015-03-24 17:31:50 +0000 (Tue, 24 Mar 2015)
Log Message:
-----------
Committing OBI release 2015-03-17
Added Paths:
-----------
releases/2015-03-17/
releases/2015-03-17/README.txt
releases/2015-03-17/branches/
releases/2015-03-17/branches/OntoFox_inputs/
releases/2015-03-17/branches/OntoFox_inputs/ChEBI_input.txt
releases/2015-03-17/branches/OntoFox_inputs/GO_input.txt
releases/2015-03-17/branches/OntoFox_inputs/NCBITaxon_input.txt
releases/2015-03-17/branches/OntoFox_inputs/OBO_input.txt
releases/2015-03-17/branches/OntoFox_inputs/PATO_input.txt
releases/2015-03-17/branches/OntoFox_inputs/SO_input.txt
releases/2015-03-17/branches/OntoFox_inputs/UO_input.txt
releases/2015-03-17/branches/OntoFox_inputs/UO_input_instance.txt
releases/2015-03-17/branches/OntoFox_inputs/readme.txt
releases/2015-03-17/branches/OntoFox_outputs/
releases/2015-03-17/branches/OntoFox_outputs/ChEBI_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/GO_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/NCBITaxon_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/OBO_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/PATO_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/SO_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/UO_imports.owl
releases/2015-03-17/branches/OntoFox_outputs/UO_instance_imports.owl
releases/2015-03-17/branches/catalog-v001.xml
releases/2015-03-17/branches/doap.template
releases/2015-03-17/branches/external-byhand.owl
releases/2015-03-17/branches/obi.owl
releases/2015-03-17/docs/
releases/2015-03-17/docs/newIDs.tab
releases/2015-03-17/docs/obi.tsv
releases/2015-03-17/docs/obi.txt
releases/2015-03-17/docs/obi_core.tsv
releases/2015-03-17/docs/obi_core.txt
releases/2015-03-17/docs/obi_iedb.tsv
releases/2015-03-17/docs/obi_iedb.txt
releases/2015-03-17/docs/obi_isa.tsv
releases/2015-03-17/docs/obi_isa.txt
releases/2015-03-17/external/
releases/2015-03-17/external/bfo2-alan/
releases/2015-03-17/external/bfo2-alan/README
releases/2015-03-17/external/bfo2-alan/bfo-relations.lisp
releases/2015-03-17/external/bfo2-alan/bfo1.1-to-2.lisp
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2-all.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2-classes.obo
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2-granularity.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2-regions.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2-relations.obo
releases/2015-03-17/external/bfo2-alan/ruttenberg-bfo2.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-classes.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-granularity.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-regions.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-relations-biotop-equiv.owl
releases/2015-03-17/external/bfo2-alan/ruttenberg-relations.owl
releases/2015-03-17/external/iao-bfo2/
releases/2015-03-17/external/iao-bfo2/IAO.owl
releases/2015-03-17/external/iao-bfo2/catalog-v001.xml
releases/2015-03-17/external/iao-bfo2/external.owl
releases/2015-03-17/external/iao-bfo2/externalByHand.owl
releases/2015-03-17/external/iao-bfo2/externalDerived.owl
releases/2015-03-17/external/iao-bfo2/iao-main.owl
releases/2015-03-17/external/iao-bfo2/obsolete.owl
releases/2015-03-17/external/iao-bfo2/ontology-metadata.owl
releases/2015-03-17/external/protege-dc.owl
releases/2015-03-17/obi.owl
releases/2015-03-17/obi_core.owl
releases/2015-03-17/obi_iedb.owl
releases/2015-03-17/obi_isa.owl
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From: <jam...@us...> - 2015-03-17 18:24:13
|
Revision: 3975
http://sourceforge.net/p/obi/code/3975
Author: jamesaoverton
Date: 2015-03-17 18:24:06 +0000 (Tue, 17 Mar 2015)
Log Message:
-----------
Fix DOAP template to use proper OBI version IRIs
Modified Paths:
--------------
trunk/src/ontology/branches/doap.template
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From: <jam...@us...> - 2015-03-17 16:28:01
|
Revision: 3974
http://sourceforge.net/p/obi/code/3974
Author: jamesaoverton
Date: 2015-03-17 16:27:53 +0000 (Tue, 17 Mar 2015)
Log Message:
-----------
Add table of new terms since the 2014-12-03 release
Added Paths:
-----------
trunk/src/ontology/spreadsheets/new_ids/newIDs_20150317.tab
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From: <jam...@us...> - 2015-03-17 15:58:32
|
Revision: 3973
http://sourceforge.net/p/obi/code/3973
Author: jamesaoverton
Date: 2015-03-17 15:58:31 +0000 (Tue, 17 Mar 2015)
Log Message:
-----------
Add OBI_0002047 'enzyme-linked antibody'
Fixes https://sourceforge.net/p/obi/obi-terms/730/
- add editor preferred term: enzyme-linked antibody
- add rdfs:label: enzyme-linked antibody
- add textual definition: A processed material that is comprised of an antibody that is covalently linked to an enzyme through bioconjugation. The enzyme can be used as a detection method when the enzyme's reaction produces a detectable signal, for example a color change when the substrate is added.
- add definition source: OBI
- add subClassOf: 'processed material'
- add subClassOf: ('has part' some 'immunoglobulin complex, circulating') and ('has_part' some enzyme)
- add subClassOf: is_specified_output_of some 'addition of molecular label'
- add example of usage: Goat anti-Mouse IgG-HRP (horse radish peroxidase) is an antibody linked to the enzyme horseradish peroxidase (HRP) that catalyzes the conversion of chromogenic substrates into colored products producing light when acting on chemiluminescent substrates (ECL).
- add term editor: Bjoern Peters, Randi Vita, James A. Overton
- add curation status: 'pending final vetting'
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2015-03-17 15:40:21
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Revision: 3972
http://sourceforge.net/p/obi/code/3972
Author: jamesaoverton
Date: 2015-03-17 15:40:14 +0000 (Tue, 17 Mar 2015)
Log Message:
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Add OBI_0002046 'surface plasmon resonance sensor chip'
Fixes https://sourceforge.net/p/obi/obi-terms/717/
- add rdfs:label: surface plasmon resonance sensor chip
- add editor preferred term: surface plasmon resonance sensor chip
- add alternative term: SPR sensor chip
- add alternative term: sensor chip
- add alternative term: biosensor chip
- add textual definition: a device that is used as a binding surface for ligand during a surface plasmon resonance assay, consisting of a glass plate to which a metal film is attached
- add definition source: OBI
- add example of usage: ProteOn GLC Sensor Chip #176-5011
- add subClassOf: 'device'
- add subClassOf: 'is part of' some 'surface plasmon resonance instrument'
- add subClassOf: 'has function' some 'solid support function'
- add term editor: Anna Maria Masci
- add curation status: 'pending final vetting'
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2015-03-17 15:15:04
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Revision: 3971
http://sourceforge.net/p/obi/code/3971
Author: jamesaoverton
Date: 2015-03-17 15:15:03 +0000 (Tue, 17 Mar 2015)
Log Message:
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Relabel "bead" to "assay bead"
Fixes https://sourceforge.net/p/obi/obi-terms/722/
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2015-03-17 14:36:43
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Revision: 3970
http://sourceforge.net/p/obi/code/3970
Author: jamesaoverton
Date: 2015-03-17 14:36:42 +0000 (Tue, 17 Mar 2015)
Log Message:
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Fix Unicode character problems again. See r3951
Revision Links:
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http://sourceforge.net/p/obi/code/3951
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2015-03-17 14:32:16
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Revision: 3969
http://sourceforge.net/p/obi/code/3969
Author: jamesaoverton
Date: 2015-03-17 14:32:04 +0000 (Tue, 17 Mar 2015)
Log Message:
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Remove strange annotation. Fixes [obi-terms:#731]
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-03-16 22:41:41
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Revision: 3968
http://sourceforge.net/p/obi/code/3968
Author: jzheng24
Date: 2015-03-16 22:41:39 +0000 (Mon, 16 Mar 2015)
Log Message:
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Following terms were added into OBI using Ontorat (ontoRat related files can be found under directory OntoRat\20150316_assay_ENCODE)
OBI_0002038 ribosomal profiling by sequencing assay
OBI_0002039 assay for transposase-accessible chromatin using sequencing
OBI_0002040 chromatin isolation by RNA purification sequencing assay
OBI_0002041 self-transcribing active regulatory region sequencing assay
OBI_0002042 carbon-copy chromosome conformation capture assay followed by sequencing assay
OBI_0002043 individual-nucleotide resolution cross-linking and immunoprecipitation sequencing assay
OBI_0002044 RNA Bind-n-Seq assay
OBI_0002045 poly(A)-site sequencing assay
Details see tracker:
https://sourceforge.net/p/obi/obi-terms/726/
Modified Paths:
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trunk/src/ontology/branches/obi.owl
Added Paths:
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trunk/src/ontology/branches/OntoRat/20150316_assay_ENCODE/
trunk/src/ontology/branches/OntoRat/20150316_assay_ENCODE/20150316_OBI_assay_input.xlsx
trunk/src/ontology/branches/OntoRat/20150316_assay_ENCODE/20150316_OBI_assay_ontoRat_setting.txt
trunk/src/ontology/branches/OntoRat/20150316_assay_ENCODE/20150316_OBI_assay_output.owl
trunk/src/ontology/branches/OntoRat/20150316_assay_ENCODE/20150316_OBI_assay_output.xlsx
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From: <jzh...@us...> - 2015-03-13 18:38:31
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Revision: 3967
http://sourceforge.net/p/obi/code/3967
Author: jzheng24
Date: 2015-03-13 18:38:24 +0000 (Fri, 13 Mar 2015)
Log Message:
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correct typo of OBI:0001239 label, details see:
https://sourceforge.net/p/obi/obi-terms/743/
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-03-03 16:18:51
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Revision: 3966
http://sourceforge.net/p/obi/code/3966
Author: jzheng24
Date: 2015-03-03 16:18:43 +0000 (Tue, 03 Mar 2015)
Log Message:
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Update the definition of 'administering substance in vivo' (http://purl.obolibrary.org/obo/OBI_0600007), details see the tracker:
https://sourceforge.net/p/obi/obi-terms/738/
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2015-02-06 20:29:13
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Revision: 3965
http://sourceforge.net/p/obi/code/3965
Author: jzheng24
Date: 2015-02-06 20:29:06 +0000 (Fri, 06 Feb 2015)
Log Message:
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New OBI assay terms (See: https://sourceforge.net/p/obi/obi-terms/725/) were added using ontoRat. All related files are in this folder.
Added Paths:
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trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/20150206_assay_input.xlsx
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/20150206_assay_input_2.xlsx
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/20150206_assay_output-2.xlsx
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/20150206_assay_output.xlsx
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/OBI_terms_to_request-SGD3_revised-CS.xls
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/assay-2.owl
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/assay.owl
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/assay_settings.txt
trunk/src/ontology/branches/OntoRat/20150206_assay_SGD/assay_settings_2.txt
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