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From: <p_r...@us...> - 2012-06-21 17:03:46
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Revision: 3587
http://obi.svn.sourceforge.net/obi/?rev=3587&view=rev
Author: p_rocca_serra
Date: 2012-06-21 17:03:40 +0000 (Thu, 21 Jun 2012)
Log Message:
-----------
adding macromolecular localization, cytochalasin, regulation of DNA methylation + correcting incorrect reference
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <p_r...@us...> - 2012-06-21 17:03:38
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Revision: 3586
http://obi.svn.sourceforge.net/obi/?rev=3586&view=rev
Author: p_rocca_serra
Date: 2012-06-21 17:03:28 +0000 (Thu, 21 Jun 2012)
Log Message:
-----------
adding macromolecular localization, cytochalasin, regulation of DNA methylation + correcting incorrect reference
Modified Paths:
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trunk/src/ontology/branches/external.owl
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From: <jzh...@us...> - 2012-06-18 05:20:53
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Revision: 3585
http://obi.svn.sourceforge.net/obi/?rev=3585&view=rev
Author: jzheng24
Date: 2012-06-18 05:20:47 +0000 (Mon, 18 Jun 2012)
Log Message:
-----------
remove defined classes place holder to simplify OBI release process
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 20:50:48
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Revision: 3584
http://obi.svn.sourceforge.net/obi/?rev=3584&view=rev
Author: p_rocca_serra
Date: 2012-06-08 20:50:42 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
More assay edits: information about RT pcr assays/qRTpcr,promoter activity detection by reporter gene assay, adding a restriction on sequencing assay (uses DNA sequencer), copy number variation profiling, mass measurement assay
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 20:47:51
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Revision: 3583
http://obi.svn.sourceforge.net/obi/?rev=3583&view=rev
Author: p_rocca_serra
Date: 2012-06-08 20:47:45 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
More assay edits: information about RT pcr assays/qRTpcr
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 16:19:11
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Revision: 3582
http://obi.svn.sourceforge.net/obi/?rev=3582&view=rev
Author: p_rocca_serra
Date: 2012-06-08 16:19:05 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
OBI meeting Action Item: moving factorial_design class and sibling to make a direct child of study design, moving dose_response_curve to make it a child of line graph and sibling of survival_curve, adding transcription profiling objective to northern blot analysis, adding restriction to have MeDIP-Seq to classify as a child of DNA methylation profiling, tuning tumor_grading so its data output is about disease course, adding restriction on histology so data output is about cell or organ section
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 15:59:22
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Revision: 3581
http://obi.svn.sourceforge.net/obi/?rev=3581&view=rev
Author: p_rocca_serra
Date: 2012-06-08 15:59:12 +0000 (Fri, 08 Jun 2012)
Log Message:
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importing chromosome, chromosome organization,actin polymerization-dependent cell motility, actin filament polymerization in preparation for adding new Assays needed by ECO
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <p_r...@us...> - 2012-06-08 15:59:04
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Revision: 3580
http://obi.svn.sourceforge.net/obi/?rev=3580&view=rev
Author: p_rocca_serra
Date: 2012-06-08 15:58:53 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
importing chromosome, chromosome organization,actin polymerization-dependent cell motility, actin filament polymerization in preparation for adding new Assays needed by ECO
Modified Paths:
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trunk/src/ontology/branches/external.owl
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From: <p_r...@us...> - 2012-06-08 15:19:08
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Revision: 3579
http://obi.svn.sourceforge.net/obi/?rev=3579&view=rev
Author: p_rocca_serra
Date: 2012-06-08 15:18:59 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
adding restriction on assay to link up what the information entity, output of those assays are about: Chip-Seq assay, Chip-Chip assay, bisulfite sequencing, methylation profiling assays, imaging assay(only adding image as specified output), all transcription profiling assays, PCR-SSCP assay, CGH; adding restrictions to allow these last 2 classes to classify as genotyping assays...FIXING CORRUPTED FILE continuing to work on this
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 14:15:49
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Revision: 3578
http://obi.svn.sourceforge.net/obi/?rev=3578&view=rev
Author: p_rocca_serra
Date: 2012-06-08 14:15:40 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
adding restriction on assay to link up what the information entity, output of those assays are about: Chip-Seq assay, Chip-Chip assay, bisulfite sequencing, methylation profiling assays, imaging assay(only adding image as specified output), all transcription profiling assays, PCR-SSCP assay, CGH; adding restrictions to allow these last 2 classes to classify as genotyping assays...continuing to work on this
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 13:47:35
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Revision: 3577
http://obi.svn.sourceforge.net/obi/?rev=3577&view=rev
Author: p_rocca_serra
Date: 2012-06-08 13:47:25 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
regulation of DNA methylation, regulation of gene expression, epigenetic
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <p_r...@us...> - 2012-06-08 13:47:07
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Revision: 3576
http://obi.svn.sourceforge.net/obi/?rev=3576&view=rev
Author: p_rocca_serra
Date: 2012-06-08 13:46:58 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
regulation of DNA methylation, regulation of gene expression, epigenetic
Modified Paths:
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trunk/src/ontology/branches/external.owl
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From: <p_r...@us...> - 2012-06-08 12:38:25
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Revision: 3575
http://obi.svn.sourceforge.net/obi/?rev=3575&view=rev
Author: p_rocca_serra
Date: 2012-06-08 12:38:16 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
adding restriction on assay specified output point to the relevant GO process: ion-channel activity, hemopoiesis, chromatin remodeling, egulation of molecular function, epigenetic, sequence-specific DNA binding, response to DNA damage stimulus: assays affected are the following: hematology,comet assay, intra and extra cellular electrophysiology recording, Chip-Seq assay,Chip-Chip assay...to be continued
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <p_r...@us...> - 2012-06-08 12:34:46
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Revision: 3574
http://obi.svn.sourceforge.net/obi/?rev=3574&view=rev
Author: p_rocca_serra
Date: 2012-06-08 12:34:40 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
importing ion-channel activity, hemopoiesis, chromatin remodeling, egulation of molecular function, epigenetic, sequence-specific DNA binding, response to DNA damage stimulus
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <p_r...@us...> - 2012-06-08 12:34:18
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Revision: 3573
http://obi.svn.sourceforge.net/obi/?rev=3573&view=rev
Author: p_rocca_serra
Date: 2012-06-08 12:34:12 +0000 (Fri, 08 Jun 2012)
Log Message:
-----------
importing ion-channel activity, hemopoiesis, chromatin remodeling, egulation of molecular function, epigenetic, sequence-specific DNA binding, response to DNA damage stimulus
Modified Paths:
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trunk/src/ontology/branches/external.owl
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From: <bjo...@us...> - 2012-06-07 21:58:46
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Revision: 3572
http://obi.svn.sourceforge.net/obi/?rev=3572&view=rev
Author: bjoernpeters
Date: 2012-06-07 21:58:40 +0000 (Thu, 07 Jun 2012)
Log Message:
-----------
modified logical definition of B cell epitope specific antigen activataion assay.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2012-06-04 15:31:23
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Revision: 3571
http://obi.svn.sourceforge.net/obi/?rev=3571&view=rev
Author: jzheng24
Date: 2012-06-04 15:31:12 +0000 (Mon, 04 Jun 2012)
Log Message:
-----------
change IAO imports to the BFO2 compatible development version to reflect the latest changes
change Obsolete terms by adding OWL deprecated annotation property as TRUE and keep OBO obsolete parent terms (class and property)
Modified Paths:
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trunk/src/ontology/branches/catalog-v001.xml
trunk/src/ontology/branches/obi.owl
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From: <yon...@us...> - 2012-06-04 00:57:12
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Revision: 3570
http://obi.svn.sourceforge.net/obi/?rev=3570&view=rev
Author: yongqunh
Date: 2012-06-04 00:57:05 +0000 (Mon, 04 Jun 2012)
Log Message:
-----------
updates. Oliver
Modified Paths:
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trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/OBI_Stat.owl
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/OBI_statisitics_OntoFox_import_input.txt
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/Statistics_OBI_He.ppt
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/catalog-v001.xml
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From: <bjo...@us...> - 2012-06-03 14:39:47
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Revision: 3569
http://obi.svn.sourceforge.net/obi/?rev=3569&view=rev
Author: bjoernpeters
Date: 2012-06-03 14:39:41 +0000 (Sun, 03 Jun 2012)
Log Message:
-----------
Made flow cytometer analyzer and sorter children of flow cytometer. Fixed typs in fluorescence.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2012-06-01 17:08:28
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Revision: 3568
http://obi.svn.sourceforge.net/obi/?rev=3568&view=rev
Author: bjoernpeters
Date: 2012-06-01 17:08:22 +0000 (Fri, 01 Jun 2012)
Log Message:
-----------
edits to label of phenotype assessment -> comparative phenotype assessment
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2012-05-31 21:41:57
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Revision: 3567
http://obi.svn.sourceforge.net/obi/?rev=3567&view=rev
Author: bjoernpeters
Date: 2012-05-31 21:41:50 +0000 (Thu, 31 May 2012)
Log Message:
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Edits from workshop. Acquisition terms. human subject enrollment.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-05-31 20:38:31
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Revision: 3566
http://obi.svn.sourceforge.net/obi/?rev=3566&view=rev
Author: ctorniai
Date: 2012-05-31 20:38:25 +0000 (Thu, 31 May 2012)
Log Message:
-----------
Added a sample ncbitaxon file for review
Added Paths:
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trunk/src/ontology/branches/ncbitaxon-mireot.owl
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From: <bjo...@us...> - 2012-05-31 14:45:05
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Revision: 3565
http://obi.svn.sourceforge.net/obi/?rev=3565&view=rev
Author: bjoernpeters
Date: 2012-05-31 14:44:55 +0000 (Thu, 31 May 2012)
Log Message:
-----------
alternative terms for median, mean
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2012-05-31 14:44:10
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Revision: 3564
http://obi.svn.sourceforge.net/obi/?rev=3564&view=rev
Author: jzheng24
Date: 2012-05-31 14:43:59 +0000 (Thu, 31 May 2012)
Log Message:
-----------
update OBI core related files based on discussion on May 30, 2012
Modified Paths:
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trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI core.ppt
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI-coreTerm.txt
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/catalog-v001.xml
Added Paths:
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trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/CORE31_insubset.owl
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI_terms_input_reviewed.xls
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/obi_core31.owl
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From: <yon...@us...> - 2012-05-30 19:23:36
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Revision: 3563
http://obi.svn.sourceforge.net/obi/?rev=3563&view=rev
Author: yongqunh
Date: 2012-05-30 19:23:30 +0000 (Wed, 30 May 2012)
Log Message:
-----------
Some updates on OBI biostatistics presentation. Also commit two new files: OntoFox input file, and the output file which forms the OBI biostatistics subset. Oliver He
Modified Paths:
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trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/Statistics_OBI_He.ppt
Added Paths:
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trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/OBI_Stat.owl
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/OBI_statisitics_OntoFox_import_input.txt
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Statistics/catalog-v001.xml
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