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From: <cto...@us...> - 2012-07-01 23:42:50
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Revision: 3613
http://obi.svn.sourceforge.net/obi/?rev=3613&view=rev
Author: ctorniai
Date: 2012-07-01 23:42:43 +0000 (Sun, 01 Jul 2012)
Log Message:
-----------
Added the proper imports to obi.owl (disjoints.owl, and iao and BFO2 files). Also made changes in disjoints.owl in order to fix inconsistency removed the following axioms:
flow cytometer analyzer disjoint from cytometer
flow cytometer sorter disjoint from cytometer
Modified Paths:
--------------
releases/2012-07-01/branches/disjoints.owl
releases/2012-07-01/branches/obi.owl
Added Paths:
-----------
releases/2012-07-01/branches/catalog-v001.xml
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From: <cto...@us...> - 2012-07-01 19:08:30
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Revision: 3612
http://obi.svn.sourceforge.net/obi/?rev=3612&view=rev
Author: ctorniai
Date: 2012-07-01 19:08:24 +0000 (Sun, 01 Jul 2012)
Log Message:
-----------
Added bfo2-alan dir and files under reloeases/2012-07-01/external/bfo2-alan
Added Paths:
-----------
releases/2012-07-01/external/bfo2-alan/
releases/2012-07-01/external/bfo2-alan/README
releases/2012-07-01/external/bfo2-alan/bfo-relations.lisp
releases/2012-07-01/external/bfo2-alan/bfo1.1-to-2.lisp
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2-all.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2-classes.obo
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2-granularity.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2-regions.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2-relations.obo
releases/2012-07-01/external/bfo2-alan/ruttenberg-bfo2.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-classes.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-granularity.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-regions.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-relations-biotop-equiv.owl
releases/2012-07-01/external/bfo2-alan/ruttenberg-relations.owl
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From: <cto...@us...> - 2012-07-01 18:58:19
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Revision: 3611
http://obi.svn.sourceforge.net/obi/?rev=3611&view=rev
Author: ctorniai
Date: 2012-07-01 18:58:13 +0000 (Sun, 01 Jul 2012)
Log Message:
-----------
Adding new release dir with proper files under 2012-07-01
Added Paths:
-----------
releases/2012-07-01/
releases/2012-07-01/branches/
releases/2012-07-01/branches/disjoints.owl
releases/2012-07-01/branches/doap.template
releases/2012-07-01/branches/external-byhand.owl
releases/2012-07-01/branches/external.owl
releases/2012-07-01/branches/externalDerived.owl
releases/2012-07-01/branches/obi.owl
releases/2012-07-01/docs/
releases/2012-07-01/docs/OBIrelease-qualityCheck.txt
releases/2012-07-01/docs/newIDs_20120629.tab
releases/2012-07-01/external/
releases/2012-07-01/external/protege-dc.owl
releases/2012-07-01/merged/
releases/2012-07-01/merged/iao-merged/
releases/2012-07-01/merged/iao-merged/iao-all.owl
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From: <cto...@us...> - 2012-07-01 18:55:37
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Revision: 3610
http://obi.svn.sourceforge.net/obi/?rev=3610&view=rev
Author: ctorniai
Date: 2012-07-01 18:55:31 +0000 (Sun, 01 Jul 2012)
Log Message:
-----------
Removed releases/2012-06-30
Removed Paths:
-------------
releases/2012-06-30/
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From: <cto...@us...> - 2012-06-30 20:01:46
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Revision: 3609
http://obi.svn.sourceforge.net/obi/?rev=3609&view=rev
Author: ctorniai
Date: 2012-06-30 20:01:40 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
Added folder structure and files under 2012-06-30
Added Paths:
-----------
releases/2012-06-30/branches/
releases/2012-06-30/branches/disjoints.owl
releases/2012-06-30/branches/doap.template
releases/2012-06-30/branches/external-byhand.owl
releases/2012-06-30/branches/external.owl
releases/2012-06-30/branches/externalDerived.owl
releases/2012-06-30/branches/obi.owl
releases/2012-06-30/docs/
releases/2012-06-30/docs/OBIrelease-qualityCheck.txt
releases/2012-06-30/docs/newIDs_20120629.tab
releases/2012-06-30/external/
releases/2012-06-30/external/protege-dc.owl
releases/2012-06-30/merged/
releases/2012-06-30/merged/iao-merged/
releases/2012-06-30/merged/iao-merged/iao-all.owl
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From: <cto...@us...> - 2012-06-30 19:19:48
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Revision: 3608
http://obi.svn.sourceforge.net/obi/?rev=3608&view=rev
Author: ctorniai
Date: 2012-06-30 19:19:43 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
fixded editor preferred terms (aligning them with the label of the class) for 'comparative phenotipic assessment', 'material acquisition' and 'information acquisition'
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-06-30 03:25:22
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Revision: 3607
http://obi.svn.sourceforge.net/obi/?rev=3607&view=rev
Author: ctorniai
Date: 2012-06-30 03:25:16 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
- Added editor preferred label through the AddEditorPreferredTerms.java
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-06-30 03:11:36
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Revision: 3606
http://obi.svn.sourceforge.net/obi/?rev=3606&view=rev
Author: ctorniai
Date: 2012-06-30 03:11:30 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
Fixed the misspelled editor preferred term of 'fluorescence detection'
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-06-30 03:09:40
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Revision: 3605
http://obi.svn.sourceforge.net/obi/?rev=3605&view=rev
Author: ctorniai
Date: 2012-06-30 03:09:35 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
Added metadata incomplete to contact representative role
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-06-30 03:06:20
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Revision: 3604
http://obi.svn.sourceforge.net/obi/?rev=3604&view=rev
Author: ctorniai
Date: 2012-06-30 03:06:13 +0000 (Sat, 30 Jun 2012)
Log Message:
-----------
Assigned new id for release
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <cto...@us...> - 2012-06-29 21:51:25
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Revision: 3603
http://obi.svn.sourceforge.net/obi/?rev=3603&view=rev
Author: ctorniai
Date: 2012-06-29 21:51:19 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
Changed label of a set of assays removing end of line char.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2012-06-29 19:19:37
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Revision: 3602
http://obi.svn.sourceforge.net/obi/?rev=3602&view=rev
Author: jzheng24
Date: 2012-06-29 19:19:32 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
add java code needed for assigning OBI ids
Modified Paths:
--------------
trunk/src/tools/build/ReleaseTool/src/owl2/IAOrelease.java
Added Paths:
-----------
trunk/src/tools/build/ReleaseTool/src/owl2/GetTermIRIs.java
trunk/src/tools/build/ReleaseTool/src/owl2/IAOmerge.java
trunk/src/tools/build/ReleaseTool/src/owl2/OntologyVisitor.java
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From: <jzh...@us...> - 2012-06-29 17:26:04
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Revision: 3601
http://obi.svn.sourceforge.net/obi/?rev=3601&view=rev
Author: jzheng24
Date: 2012-06-29 17:25:59 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
jar file may need for running the Java code
Added Paths:
-----------
trunk/src/tools/build/ReleaseTool/log4j-1.2.13.jar
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From: <jzh...@us...> - 2012-06-29 17:24:57
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Revision: 3600
http://obi.svn.sourceforge.net/obi/?rev=3600&view=rev
Author: jzheng24
Date: 2012-06-29 17:24:51 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
removed because add file in the wrong place
Removed Paths:
-------------
trunk/src/tools/log4j-1.2.13.jar
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From: <jzh...@us...> - 2012-06-29 17:20:45
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Revision: 3599
http://obi.svn.sourceforge.net/obi/?rev=3599&view=rev
Author: jzheng24
Date: 2012-06-29 17:20:39 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
might need for running reasoner java code
Added Paths:
-----------
trunk/src/tools/log4j-1.2.13.jar
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From: <jzh...@us...> - 2012-06-29 17:17:18
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Revision: 3598
http://obi.svn.sourceforge.net/obi/?rev=3598&view=rev
Author: jzheng24
Date: 2012-06-29 17:17:09 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
remove unwanted files
Removed Paths:
-------------
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/COPYING.LESSER.txt
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/COPYING.txt
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/LICENSE.txt
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/build.xml
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/javadoc/
trunk/src/tools/build/ReleaseTool/owlapi-3.2.3/lib/
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From: <jzh...@us...> - 2012-06-29 17:12:00
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Revision: 3597
http://obi.svn.sourceforge.net/obi/?rev=3597&view=rev
Author: jzheng24
Date: 2012-06-29 17:11:54 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
remove unwanted files
Removed Paths:
-------------
trunk/src/tools/build/ReleaseTool/HermiT/project/
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From: <jzh...@us...> - 2012-06-29 16:47:06
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Revision: 3595
http://obi.svn.sourceforge.net/obi/?rev=3595&view=rev
Author: jzheng24
Date: 2012-06-29 16:46:56 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
marked core terms based on the OBI wiki with their German labels
two term are not in current release yet
Modified Paths:
--------------
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI_terms_input_reviewed.xls
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From: <cto...@us...> - 2012-06-29 16:11:57
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Revision: 3594
http://obi.svn.sourceforge.net/obi/?rev=3594&view=rev
Author: ctorniai
Date: 2012-06-29 16:11:47 +0000 (Fri, 29 Jun 2012)
Log Message:
-----------
Adding the directory for the new release
Added Paths:
-----------
releases/2012-06-30/
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From: <jzh...@us...> - 2012-06-26 22:28:36
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Revision: 3593
http://obi.svn.sourceforge.net/obi/?rev=3593&view=rev
Author: jzheng24
Date: 2012-06-26 22:28:30 +0000 (Tue, 26 Jun 2012)
Log Message:
-----------
all core terms are in OBI
Modified Paths:
--------------
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI-coreTerm.txt
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From: <jzh...@us...> - 2012-06-26 22:16:34
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Revision: 3592
http://obi.svn.sourceforge.net/obi/?rev=3592&view=rev
Author: jzheng24
Date: 2012-06-26 22:16:28 +0000 (Tue, 26 Jun 2012)
Log Message:
-----------
Desired features for OBI release that sent to Oort developers
Added Paths:
-----------
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/Oort_desired_features.txt
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From: <jzh...@us...> - 2012-06-26 22:14:00
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Revision: 3591
http://obi.svn.sourceforge.net/obi/?rev=3591&view=rev
Author: jzheng24
Date: 2012-06-26 22:13:54 +0000 (Tue, 26 Jun 2012)
Log Message:
-----------
copy core terms from the OBI wiki page
Modified Paths:
--------------
trunk/docs/presentations/OBI workshop May 2012 Ann Arbor/OBI Core/OBI-coreTerm.txt
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From: <rv...@us...> - 2012-06-25 01:41:09
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Revision: 3590
http://obi.svn.sourceforge.net/obi/?rev=3590&view=rev
Author: rvita
Date: 2012-06-25 01:41:03 +0000 (Mon, 25 Jun 2012)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <rv...@us...> - 2012-06-24 22:33:43
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Revision: 3589
http://obi.svn.sourceforge.net/obi/?rev=3589&view=rev
Author: rvita
Date: 2012-06-24 22:33:37 +0000 (Sun, 24 Jun 2012)
Log Message:
-----------
added GO biological processes ganulysin production and granzyme A production for IEDB.
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/external.owl
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From: <p_r...@us...> - 2012-06-21 17:17:49
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Revision: 3588
http://obi.svn.sourceforge.net/obi/?rev=3588&view=rev
Author: p_rocca_serra
Date: 2012-06-21 17:17:43 +0000 (Thu, 21 Jun 2012)
Log Message:
-----------
adding 18 classes for ECO-OBI alignment: 2 objectives + 16 assays (cytochalasin-induced inhibition of actin polymerization assay,amplification of intermethylated sites (AIMS) assay,in-situ hybridization,fluorescence in-situ hybridization,methylation-specific polymerase chain reaction,yeast one-hybrid,bacterial one-hybrid,yeast 2-hybrid, Sos-recruitment assay,split-ubiquitin assay,far-Western blot,RNA protection assay,cap analysis of gene expression,nano-cap analysis of gene expression,gene knock-down assay,electrophoretic mobility shift assay) using Mapping Master, reasoning OK
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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