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From: <mco...@us...> - 2007-12-10 21:29:06
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Revision: 210
http://obi.svn.sourceforge.net/obi/?rev=210&view=rev
Author: mcourtot
Date: 2007-12-10 13:29:10 -0800 (Mon, 10 Dec 2007)
Log Message:
-----------
changed the restriction on protocol_application to is_realization_of some (is_concretization_of some OBI_272) to solve unsatisfiable classes
Modified Paths:
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branchDevelopment/trunk/ProtocolApplication.owl
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From: <dan...@us...> - 2007-12-10 14:28:40
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Revision: 209
http://obi.svn.sourceforge.net/obi/?rev=209&view=rev
Author: daniel_schober
Date: 2007-12-10 06:28:43 -0800 (Mon, 10 Dec 2007)
Log Message:
-----------
The following terms were curated:
* optical_subsystem
definition_citation (should be _source): http://en.wikipedia.org/wiki/Optics Intro to Flow by BD www.petermac.org/pdf/Intro%20to%20Flow%20Cytometry%20.pdf
These are inappropriate (first case) or outdated (latter case) and were deleted and 'John Quinn' put there instead.
editor_note: DS: Is 'subsytem' necessary or is 'optical_system' enough.
Not sure its graph position since an optical subsystem is not necessarily an instrument, but more likely part of one.
* diode_laser
Refined definition: A diode laser is a laser in which the active medium is a p-n junction semiconductor laser diode, similar to that found in a light-emitting diode. Laser diodes emit at wavelengths from 375 nm to 1800 nm, and wavelengths of over 3 micrometer have been demonstrated. A diode laser can by used to irradiate cells in a flow cytometer.
Updated def-editor
* dye_laser
minor orthographic corrections in def.
Updated def-editor
* gas_laser
Altered definition: A gas laser is a laser in which the lasing medium is a gas. The laser medium is places between two parallel mirrors for light emmission amplification. The gas is excited to emit light via an external light source or an electric current dischargeing through the gas.
Updated def-editor
* ion_laser
Shortened definition (skipped empirical statement of class parenthood).
Updated def-editor
* argon_ion_laser
normalized def
Updated def-editor
* krypton_ion_laser
Normalized def
Updated def-editor
* solid_state_laser
iMPROVED DEFINITION: A solid-state laser is a laser that uses a lasing medium that is a solid, rather than a liquid such as dye lasers or a gas such as gas lasers. Semiconductor-based diode lasers are also in the solid state, but are generally considered separately from solid-state lasers.
Updated def-editor
* neodymium-YAG_laser
Updated def-editor
* obscuration_bar
Updated def-editor
* heating_block
New definition: A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay
Updated def-editor
Additionally I have curated:
* laser
definition: A laser (acronym for light amplification by the stimulated emission of radiation) is a light source that emits photons in a coherent beam. A laser uses a solid, liquid or gaseous lasing medium, that contains molecules, of which some atoms have electrons that emit photons of the same coherent frequency when falling back to their normal orbital after excitation (stimulation) by external means. A laser is the most common way to irradiate a cell in a flow cytometer.
A general comment: I don't think we should commit on a 'per change'-basis, but on a per task basis. Having 15 revisions for one task is not necessary I belive.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 23:24:50
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Revision: 208
http://obi.svn.sourceforge.net/obi/?rev=208&view=rev
Author: mcourtot
Date: 2007-12-07 15:24:55 -0800 (Fri, 07 Dec 2007)
Log Message:
-----------
flow_cytometers curated
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 22:44:41
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Revision: 207
http://obi.svn.sourceforge.net/obi/?rev=207&view=rev
Author: mcourtot
Date: 2007-12-07 14:44:46 -0800 (Fri, 07 Dec 2007)
Log Message:
-----------
curated flow_cytometer_amaylser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 22:34:32
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Revision: 206
http://obi.svn.sourceforge.net/obi/?rev=206&view=rev
Author: mcourtot
Date: 2007-12-07 14:34:33 -0800 (Fri, 07 Dec 2007)
Log Message:
-----------
curation continued
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 22:31:56
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Revision: 205
http://obi.svn.sourceforge.net/obi/?rev=205&view=rev
Author: mcourtot
Date: 2007-12-07 14:32:01 -0800 (Fri, 07 Dec 2007)
Log Message:
-----------
curation continued
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 19:41:08
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Revision: 204
http://obi.svn.sourceforge.net/obi/?rev=204&view=rev
Author: mcourtot
Date: 2007-12-07 11:41:08 -0800 (Fri, 07 Dec 2007)
Log Message:
-----------
cleaned-up quotes and definition_source, except for flow cytometers instruments names (like BioSorter) that will be cleaned later
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 00:59:15
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Revision: 203
http://obi.svn.sourceforge.net/obi/?rev=203&view=rev
Author: mcourtot
Date: 2007-12-06 16:59:20 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated guava flow_cytometer_analyser family
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-07 00:48:27
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Revision: 202
http://obi.svn.sourceforge.net/obi/?rev=202&view=rev
Author: mcourtot
Date: 2007-12-06 16:48:32 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated FACS flow_cytometer_analyser family
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 23:19:34
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Revision: 201
http://obi.svn.sourceforge.net/obi/?rev=201&view=rev
Author: mcourtot
Date: 2007-12-06 15:19:38 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated cyto_buoy family
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 23:10:38
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Revision: 200
http://obi.svn.sourceforge.net/obi/?rev=200&view=rev
Author: mcourtot
Date: 2007-12-06 15:10:42 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated some flow_cytometer_analyser
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 23:04:19
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Revision: 199
http://obi.svn.sourceforge.net/obi/?rev=199&view=rev
Author: mcourtot
Date: 2007-12-06 15:04:19 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated some flow_cytometer_analyser
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:54:02
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Revision: 198
http://obi.svn.sourceforge.net/obi/?rev=198&view=rev
Author: mcourtot
Date: 2007-12-06 14:54:07 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated_flow_cytometer_sorter
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:49:04
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Revision: 197
http://obi.svn.sourceforge.net/obi/?rev=197&view=rev
Author: mcourtot
Date: 2007-12-06 14:49:06 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated flow_cytometer_analyser
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:45:10
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Revision: 196
http://obi.svn.sourceforge.net/obi/?rev=196&view=rev
Author: mcourtot
Date: 2007-12-06 14:45:07 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated image_cytometer
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 22:35:02
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Revision: 195
http://obi.svn.sourceforge.net/obi/?rev=195&view=rev
Author: mcourtot
Date: 2007-12-06 14:35:05 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated flow cytometer
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 20:07:10
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Revision: 194
http://obi.svn.sourceforge.net/obi/?rev=194&view=rev
Author: mcourtot
Date: 2007-12-06 12:07:12 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated cytometer
curated waterbath (heated_bath)
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <mco...@us...> - 2007-12-06 19:46:42
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Revision: 193
http://obi.svn.sourceforge.net/obi/?rev=193&view=rev
Author: mcourtot
Date: 2007-12-06 11:46:47 -0800 (Thu, 06 Dec 2007)
Log Message:
-----------
curated microtiter_plate
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <jam...@us...> - 2007-12-05 17:55:21
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Revision: 192
http://obi.svn.sourceforge.net/obi/?rev=192&view=rev
Author: jamesmalone
Date: 2007-12-05 09:55:24 -0800 (Wed, 05 Dec 2007)
Log Message:
-----------
Update to DT OWL file reflecting changes from action item JM 11 DT workshop, Nov 2007
Modified Paths:
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branchDevelopment/trunk/DataTransformation.owl
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From: <jam...@us...> - 2007-12-05 17:54:17
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Revision: 191
http://obi.svn.sourceforge.net/obi/?rev=191&view=rev
Author: jamesmalone
Date: 2007-12-05 09:54:17 -0800 (Wed, 05 Dec 2007)
Log Message:
-----------
Latest autoid file for data transformation 5th Dec 2007
Modified Paths:
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branchDevelopment/trunk/lastac_autoID/default.properties.datatransformation
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From: <fgi...@us...> - 2007-12-05 15:22:43
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Revision: 190
http://obi.svn.sourceforge.net/obi/?rev=190&view=rev
Author: fgibson_sf
Date: 2007-12-05 07:21:51 -0800 (Wed, 05 Dec 2007)
Log Message:
-----------
Reviewed the branch and the annotation properties for
definition, example of use, definition_editor and definition_citation for the following terms:
-device
-instrument
-labware
-gamma counter
-incubator
-light source (normalised definition)
-arc lamp (normalised definition)
-laser (normalised definition)
-helium neon ion laser (normalised definition)
-mixed argon krypton gas laser (normalised definition)
-metal vapor laser (normalised definition)
-helium cadmium ion laser (normalised definition)
-optical filter (normalised definition)
-band pass filter (normalised definition)
-dichroic filter (normalised definition)
-dichroic mirror (normalised definition)
-long pass filter (normalised definition)
-short pass filter (normalised definition)
-DNA sequencer (normalised definition)
-array scanner (normalised definition)
-arrayer (normalised definition)
-mass spectrometry instrument changed to mass spectrometer
Modified Paths:
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branchDevelopment/trunk/InstrumentAndPart.owl
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From: <all...@us...> - 2007-11-23 09:23:32
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Revision: 189
http://obi.svn.sourceforge.net/obi/?rev=189&view=rev
Author: allysonlister
Date: 2007-11-23 01:23:19 -0800 (Fri, 23 Nov 2007)
Log Message:
-----------
Melanie noticed some broken links in the resources index.php - now fixed - simply the wrong urls
Modified Paths:
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web/trunk/htdocs/resources/index.php
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From: <all...@us...> - 2007-11-22 16:02:28
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Revision: 188
http://obi.svn.sourceforge.net/obi/?rev=188&view=rev
Author: allysonlister
Date: 2007-11-22 08:02:28 -0800 (Thu, 22 Nov 2007)
Log Message:
-----------
modified copying instructions for the static web pages, to make it more permissive.
Modified Paths:
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web/trunk/Maintenance.txt
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From: <all...@us...> - 2007-11-21 16:33:54
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Revision: 187
http://obi.svn.sourceforge.net/obi/?rev=187&view=rev
Author: allysonlister
Date: 2007-11-21 08:33:53 -0800 (Wed, 21 Nov 2007)
Log Message:
-----------
An example change only, to show how Subversion works. We'll remove the modification as soon as the live demo is over. Changed the editor_note in sample_preparation_for_assay.
Modified Paths:
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branchDevelopment/trunk/ProtocolApplication.owl
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From: <all...@us...> - 2007-11-21 13:03:20
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Revision: 186
http://obi.svn.sourceforge.net/obi/?rev=186&view=rev
Author: allysonlister
Date: 2007-11-21 05:03:24 -0800 (Wed, 21 Nov 2007)
Log Message:
-----------
added nature paper to the list, updated James' and Tina's profiles on the consortium page, and added a redirect from the old community directory to the new consortium directory.
Modified Paths:
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web/trunk/htdocs/consortium/index.php
web/trunk/htdocs/index.php
web/trunk/htdocs/resources/index.php
Added Paths:
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web/trunk/htdocs/community/
web/trunk/htdocs/community/index.php
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