Menu
▾
▴
obi-svn-commit — Mailing list to receive notices of commits to the OBI SVN.
You can subscribe to this list here.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
(3) |
May
(6) |
Jun
(29) |
Jul
(37) |
Aug
(20) |
Sep
(9) |
Oct
(24) |
Nov
(14) |
Dec
(39) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
(61) |
Feb
(64) |
Mar
(118) |
Apr
(92) |
May
(130) |
Jun
(106) |
Jul
(86) |
Aug
(32) |
Sep
(65) |
Oct
(126) |
Nov
(125) |
Dec
(82) |
| 2009 |
Jan
(118) |
Feb
(99) |
Mar
(140) |
Apr
(30) |
May
(25) |
Jun
(43) |
Jul
(152) |
Aug
(130) |
Sep
(43) |
Oct
(285) |
Nov
(214) |
Dec
(96) |
| 2010 |
Jan
(44) |
Feb
(26) |
Mar
(143) |
Apr
(24) |
May
(36) |
Jun
(42) |
Jul
(12) |
Aug
(29) |
Sep
(7) |
Oct
(24) |
Nov
(6) |
Dec
(27) |
| 2011 |
Jan
(4) |
Feb
(6) |
Mar
(28) |
Apr
(37) |
May
(27) |
Jun
(25) |
Jul
(68) |
Aug
(14) |
Sep
(8) |
Oct
(36) |
Nov
(10) |
Dec
(33) |
| 2012 |
Jan
(56) |
Feb
(14) |
Mar
(32) |
Apr
(22) |
May
(35) |
Jun
(41) |
Jul
(66) |
Aug
(1) |
Sep
(7) |
Oct
(6) |
Nov
(6) |
Dec
(4) |
| 2013 |
Jan
(9) |
Feb
(5) |
Mar
(21) |
Apr
(18) |
May
(24) |
Jun
(33) |
Jul
(4) |
Aug
(7) |
Sep
(17) |
Oct
(50) |
Nov
(18) |
Dec
(10) |
| 2014 |
Jan
(1) |
Feb
(3) |
Mar
(12) |
Apr
(2) |
May
(2) |
Jun
(2) |
Jul
|
Aug
(4) |
Sep
(2) |
Oct
(1) |
Nov
(3) |
Dec
(9) |
| 2015 |
Jan
(6) |
Feb
(2) |
Mar
(15) |
Apr
(2) |
May
(5) |
Jun
(4) |
Jul
(2) |
Aug
(5) |
Sep
(8) |
Oct
(3) |
Nov
(9) |
Dec
(18) |
| 2016 |
Jan
(3) |
Feb
(2) |
Mar
(15) |
Apr
(1) |
May
(4) |
Jun
(10) |
Jul
(2) |
Aug
(2) |
Sep
(5) |
Oct
(5) |
Nov
|
Dec
|
| 2017 |
Jan
(4) |
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: <fgi...@us...> - 2008-01-07 14:23:43
|
Revision: 235
http://obi.svn.sourceforge.net/obi/?rev=235&view=rev
Author: fgibson_sf
Date: 2008-01-07 06:23:32 -0800 (Mon, 07 Jan 2008)
Log Message:
-----------
+Edits compliant with the Instument branch call https://wiki.cbil.upenn.edu/obiwiki/index.php/InstrumentMinutes11Dec2007
-moved analog-to-digital converter under instument
-deleted _collected relations and subclasses
-deleted instrumentAndPartTemporary and subclasses
-deleted column_chromatography_matrix and moved to biomaterial
-Added a definition and citation for chromatography column and moved it under labware
-moved electrophoresis_box under labware
-moved pump_valve_switch under labware
-deleted the class cardinal_part_of_fluidic_system and moved the subclasses under labware
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-04 20:51:39
|
Revision: 234
http://obi.svn.sourceforge.net/obi/?rev=234&view=rev
Author: alanr
Date: 2008-01-04 12:51:43 -0800 (Fri, 04 Jan 2008)
Log Message:
-----------
lowercase class names (really)
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-04 17:19:48
|
Revision: 233
http://obi.svn.sourceforge.net/obi/?rev=233&view=rev
Author: alanr
Date: 2008-01-04 09:19:53 -0800 (Fri, 04 Jan 2008)
Log Message:
-----------
lowercase class names
Modified Paths:
--------------
branchDevelopment/trunk/Role-staging.owl
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-04 16:56:31
|
Revision: 232
http://obi.svn.sourceforge.net/obi/?rev=232&view=rev
Author: alanr
Date: 2008-01-04 08:56:23 -0800 (Fri, 04 Jan 2008)
Log Message:
-----------
More work on role
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
branchDevelopment/trunk/spreadsheets-imported/role-branch-2007-11-28.txt
Added Paths:
-----------
branchDevelopment/trunk/Role-staging.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-01-03 18:01:48
|
Revision: 231
http://obi.svn.sourceforge.net/obi/?rev=231&view=rev
Author: bjoernpeters
Date: 2008-01-03 10:01:53 -0800 (Thu, 03 Jan 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/ProtocolApplication.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-03 04:06:13
|
Revision: 230
http://obi.svn.sourceforge.net/obi/?rev=230&view=rev
Author: alanr
Date: 2008-01-02 20:06:18 -0800 (Wed, 02 Jan 2008)
Log Message:
-----------
source and code for converting denrie and role branches to owl. Role not finished yet
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/sheet-importer.lisp
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
branchDevelopment/trunk/spreadsheets-imported/
branchDevelopment/trunk/spreadsheets-imported/denrie-2007-12-20.txt
branchDevelopment/trunk/spreadsheets-imported/role-branch-2007-11-28.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-01-03 03:53:15
|
Revision: 229
http://obi.svn.sourceforge.net/obi/?rev=229&view=rev
Author: alanr
Date: 2008-01-02 19:53:19 -0800 (Wed, 02 Jan 2008)
Log Message:
-----------
Fixed mixture of lsw bad and protege bad
Modified Paths:
--------------
branchDevelopment/trunk/DigitalEntityPlus.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2007-12-27 13:59:25
|
Revision: 228
http://obi.svn.sourceforge.net/obi/?rev=228&view=rev
Author: alanr
Date: 2007-12-27 05:59:30 -0800 (Thu, 27 Dec 2007)
Log Message:
-----------
Import from DENRI spreadsheet. Datum given identifier OBI_305 which was data_object
Modified Paths:
--------------
branchDevelopment/trunk/DigitalEntityPlus.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2007-12-20 23:21:07
|
Revision: 227
http://obi.svn.sourceforge.net/obi/?rev=227&view=rev
Author: mcourtot
Date: 2007-12-20 15:21:10 -0800 (Thu, 20 Dec 2007)
Log Message:
-----------
clean up a few metadata (cardinality etc)
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jgr...@us...> - 2007-12-20 18:14:21
|
Revision: 226
http://obi.svn.sourceforge.net/obi/?rev=226&view=rev
Author: jgreenbaum
Date: 2007-12-20 10:14:23 -0800 (Thu, 20 Dec 2007)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/ProtocolApplication.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-19 17:22:12
|
Revision: 225
http://obi.svn.sourceforge.net/obi/?rev=225&view=rev
Author: jamesmalone
Date: 2007-12-19 09:22:17 -0800 (Wed, 19 Dec 2007)
Log Message:
-----------
Couple of loading bugs fixed.
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-19 14:04:54
|
Revision: 224
http://obi.svn.sourceforge.net/obi/?rev=224&view=rev
Author: jamesmalone
Date: 2007-12-19 06:04:56 -0800 (Wed, 19 Dec 2007)
Log Message:
-----------
Update to file reflecting changes from action item EM 6, 20, and 5 DT workshop Nov 07, James Malone Dec 2007
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-19 14:03:29
|
Revision: 223
http://obi.svn.sourceforge.net/obi/?rev=223&view=rev
Author: jamesmalone
Date: 2007-12-19 06:03:33 -0800 (Wed, 19 Dec 2007)
Log Message:
-----------
Latest autoid file for data transformation 19th Dec 2007
Modified Paths:
--------------
branchDevelopment/trunk/lastac_autoID/default.properties.datatransformation
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-18 17:33:08
|
Revision: 222
http://obi.svn.sourceforge.net/obi/?rev=222&view=rev
Author: jamesmalone
Date: 2007-12-18 09:33:09 -0800 (Tue, 18 Dec 2007)
Log Message:
-----------
Update to file reflecting changes from action item EM 3,4 & 14 DT workshop, Nov 2007
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-18 14:28:27
|
Revision: 221
http://obi.svn.sourceforge.net/obi/?rev=221&view=rev
Author: jamesmalone
Date: 2007-12-18 06:28:27 -0800 (Tue, 18 Dec 2007)
Log Message:
-----------
Latest autoid file for data transformation 18th Dec 2007 - note lower id because some id's have been recovered from class deletion
Modified Paths:
--------------
branchDevelopment/trunk/lastac_autoID/default.properties.datatransformation
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2007-12-18 12:01:41
|
Revision: 220
http://obi.svn.sourceforge.net/obi/?rev=220&view=rev
Author: allysonlister
Date: 2007-12-18 04:01:31 -0800 (Tue, 18 Dec 2007)
Log Message:
-----------
Updated the static pages with the following requests: 1) Richard S. added to ICO / Clinical Investigations Community 2) Fixed spelling mistake on front page 3) Added link to the OBI FAQ from the Resources page
Modified Paths:
--------------
web/trunk/htdocs/consortium/index.php
web/trunk/htdocs/index.php
web/trunk/htdocs/resources/index.php
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2007-12-18 12:00:20
|
Revision: 219
http://obi.svn.sourceforge.net/obi/?rev=219&view=rev
Author: allysonlister
Date: 2007-12-18 04:00:07 -0800 (Tue, 18 Dec 2007)
Log Message:
-----------
added minutes from coord call
Added Paths:
-----------
web/trunk/htdocs/notes/coordinators/20071212.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2007-12-13 23:30:23
|
Revision: 218
http://obi.svn.sourceforge.net/obi/?rev=218&view=rev
Author: mcourtot
Date: 2007-12-13 15:30:27 -0800 (Thu, 13 Dec 2007)
Log Message:
-----------
curated analog-to-digital_converter
corrected definition_editor
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2007-12-13 23:06:02
|
Revision: 217
http://obi.svn.sourceforge.net/obi/?rev=217&view=rev
Author: mcourtot
Date: 2007-12-13 15:06:04 -0800 (Thu, 13 Dec 2007)
Log Message:
-----------
curated computer, lactoscope thermal_cycler MIFC and ImageStream
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2007-12-13 18:24:18
|
Revision: 216
http://obi.svn.sourceforge.net/obi/?rev=216&view=rev
Author: bjoernpeters
Date: 2007-12-13 10:24:17 -0800 (Thu, 13 Dec 2007)
Log Message:
-----------
Protocol application call 12/13
Modified Paths:
--------------
branchDevelopment/trunk/ProtocolApplication.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_r...@us...> - 2007-12-13 14:12:27
|
Revision: 215
http://obi.svn.sourceforge.net/obi/?rev=215&view=rev
Author: p_rocca_serra
Date: 2007-12-13 06:12:31 -0800 (Thu, 13 Dec 2007)
Log Message:
-----------
Adding New Class: sequential_design
Class hierarchy changes and creation of disjoints classes
Updating definitions and metadata
Providing examples
Modified Paths:
--------------
branchDevelopment/trunk/Plan.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <dan...@us...> - 2007-12-11 17:31:18
|
Revision: 214
http://obi.svn.sourceforge.net/obi/?rev=214&view=rev
Author: daniel_schober
Date: 2007-12-11 09:31:21 -0800 (Tue, 11 Dec 2007)
Log Message:
-----------
Submit pdiscuss point on metadata to obi dev, also if annotation property values comma separated or associated/used multiple times, e.g. Kevin Lister, Ally as Fluometer definition editor.
Cardinal Parts get deleted and subcalsses (DS)
delete _collected_relations (FG)
_move_to_biomaterial_branch, del, and do so (FG)
FG sends email to Chris an Trish to clear need for liguid handler, and others in MO.
filtration_labware was deleted, because it had no valuable metadata anyway.
Went through issues list and DS made changes on owl file directly.ImageStream was moved under a new parent under instrument multispectral_imaging_flow_cytometer to avoid multiple parenthood.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2007-12-11 16:03:16
|
Revision: 213
http://obi.svn.sourceforge.net/obi/?rev=213&view=rev
Author: jamesmalone
Date: 2007-12-11 08:03:19 -0800 (Tue, 11 Dec 2007)
Log Message:
-----------
Update to DT OWL file reflecting changes from action item EM14 DT workshop, Nov 2007
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2007-12-11 13:56:06
|
Revision: 212
http://obi.svn.sourceforge.net/obi/?rev=212&view=rev
Author: allysonlister
Date: 2007-12-11 05:55:52 -0800 (Tue, 11 Dec 2007)
Log Message:
-----------
;; This buffer is for notes you don't want to save, and for Lisp evaluation.
;; If you want to create a file, first visit that file with C-x C-f,
;; then enter the text in that file's own buffer.
DNA_sequencer:
1. Didn't have curation_complete (had raw_import), but all fields were correctly filled in by Trish at the time. I've just updated the curation_complete, as this is a term with definition etc straight from MO.
2. Fixed typo in definition
array_scanner:
Same note as #1 in DNA_sequencer.
microarray_wash_station:
1. normalized definition. Now "A microarray wash station is an instrument used to wash Affymetrix-type arrays."
2. Question about the definition: it seems a very generic term, yet the definition specifies Affy arrays only. Shouldn't we generalize this definition, and then create a child of this which is only applicable to Affy arrays (if the latter is in fact required?)
crosslinking_instrument:
1. Question: if we intend that other ontologies can be used in conjunction with OBI, we shouldn't have such a general term used specifically for chemically joining two or more molecules. I'm sure there are other "crosslinkers" that are on a much different scale in engineering etc. I have modified the term as follows:
a. Preferred_name = molecular_crosslinker
Does everyone agree?
fluorometer: added to the definition, added curation_status and modified definition_source and _editor.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2007-12-10 21:36:46
|
Revision: 211
http://obi.svn.sourceforge.net/obi/?rev=211&view=rev
Author: mcourtot
Date: 2007-12-10 13:36:49 -0800 (Mon, 10 Dec 2007)
Log Message:
-----------
changed retsriction of intervention_study to is_concretized_as some (is_realized_as some (process and has_part some (has_input some (has_role some treated_role))))
Modified Paths:
--------------
branchDevelopment/trunk/Plan.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
