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From: <jam...@us...> - 2016-06-13 18:40:49
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Revision: 4063
http://sourceforge.net/p/obi/code/4063
Author: jamesaoverton
Date: 2016-06-13 18:40:47 +0000 (Mon, 13 Jun 2016)
Log Message:
-----------
Move biobank specimens to a new module
- add table of new IDs
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
Added Paths:
-----------
trunk/src/ontology/branches/modules/biobank-specimens.owl
trunk/src/ontology/branches/templates/biobank-specimens.tsv
trunk/src/ontology/spreadsheets/new_ids/newIDs_20160608.tab
Removed Paths:
-------------
trunk/src/ontology/branches/biobank_tissue_specimen.owl
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From: <sto...@us...> - 2016-06-08 22:02:30
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Revision: 4062
http://sourceforge.net/p/obi/code/4062
Author: stoeckert
Date: 2016-06-08 22:02:28 +0000 (Wed, 08 Jun 2016)
Log Message:
-----------
added biobank_tissue_specimens import
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <sto...@us...> - 2016-06-08 22:01:46
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Revision: 4061
http://sourceforge.net/p/obi/code/4061
Author: stoeckert
Date: 2016-06-08 22:01:44 +0000 (Wed, 08 Jun 2016)
Log Message:
-----------
import file for tissue specimens
Added Paths:
-----------
trunk/src/ontology/branches/biobank_tissue_specimen.owl
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From: <sto...@us...> - 2016-05-18 21:21:34
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Revision: 4060
http://sourceforge.net/p/obi/code/4060
Author: stoeckert
Date: 2016-05-18 21:21:33 +0000 (Wed, 18 May 2016)
Log Message:
-----------
fixed misassignment of UBERON parent class
Modified Paths:
--------------
trunk/src/ontology/branches/OntoFox_outputs/OBO_imports.owl
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From: <sto...@us...> - 2016-05-18 21:16:30
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Revision: 4059
http://sourceforge.net/p/obi/code/4059
Author: stoeckert
Date: 2016-05-18 21:16:29 +0000 (Wed, 18 May 2016)
Log Message:
-----------
fixed misassignment of UBERON parent class
Modified Paths:
--------------
trunk/src/ontology/branches/OntoFox_inputs/OBO_input.txt
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From: <sto...@us...> - 2016-05-18 20:57:31
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Revision: 4058
http://sourceforge.net/p/obi/code/4058
Author: stoeckert
Date: 2016-05-18 20:57:30 +0000 (Wed, 18 May 2016)
Log Message:
-----------
added UBERON terms for tissue specimens
Modified Paths:
--------------
trunk/src/ontology/branches/OntoFox_inputs/OBO_input.txt
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From: <sto...@us...> - 2016-05-18 20:56:45
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Revision: 4057
http://sourceforge.net/p/obi/code/4057
Author: stoeckert
Date: 2016-05-18 20:56:44 +0000 (Wed, 18 May 2016)
Log Message:
-----------
added UBERON terms for tissue specimens
Modified Paths:
--------------
trunk/src/ontology/branches/OntoFox_outputs/OBO_imports.owl
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From: <bjo...@us...> - 2016-04-25 16:50:48
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Revision: 4056
http://sourceforge.net/p/obi/code/4056
Author: bjoernpeters
Date: 2016-04-25 16:50:47 +0000 (Mon, 25 Apr 2016)
Log Message:
-----------
reworded definition of study design execution. Closing ticket https://sourceforge.net/p/obi/obi-terms/796/
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2016-03-27 21:13:42
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Revision: 4055
http://sourceforge.net/p/obi/code/4055
Author: bjoernpeters
Date: 2016-03-27 21:13:40 +0000 (Sun, 27 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/release.enl
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From: <bjo...@us...> - 2016-03-27 20:32:12
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Revision: 4054
http://sourceforge.net/p/obi/code/4054
Author: bjoernpeters
Date: 2016-03-27 20:32:11 +0000 (Sun, 27 Mar 2016)
Log Message:
-----------
Removed Paths:
-------------
trunk/docs/papers/release/2016 PLoS ONE revision/Revised manuscript - with tracked changes.doc
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From: <bjo...@us...> - 2016-03-27 20:31:45
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Revision: 4053
http://sourceforge.net/p/obi/code/4053
Author: bjoernpeters
Date: 2016-03-27 20:31:44 +0000 (Sun, 27 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYD
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
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From: <bjo...@us...> - 2016-03-27 20:31:33
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Revision: 4052
http://sourceforge.net/p/obi/code/4052
Author: bjoernpeters
Date: 2016-03-27 20:31:31 +0000 (Sun, 27 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/2016 PLoS ONE revision/Response to Reviewers.docx
Added Paths:
-----------
trunk/docs/papers/release/2016 PLoS ONE revision/Figure 2.tif
trunk/docs/papers/release/2016 PLoS ONE revision/Figure 3.tif
trunk/docs/papers/release/2016 PLoS ONE revision/OBI2016.docx
trunk/docs/papers/release/2016 PLoS ONE revision/Revised manuscript - with tracked changes.docx
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From: <agb...@us...> - 2016-03-23 10:43:53
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Revision: 4051
http://sourceforge.net/p/obi/code/4051
Author: agbeltran
Date: 2016-03-23 10:43:51 +0000 (Wed, 23 Mar 2016)
Log Message:
-----------
Adding high resolution Figure 5 following PLoS One guidelines
Added Paths:
-----------
trunk/docs/papers/release/2016 PLoS ONE revision/Figure5-HR.tif
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From: <sto...@us...> - 2016-03-22 16:33:22
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Revision: 4050
http://sourceforge.net/p/obi/code/4050
Author: stoeckert
Date: 2016-03-22 16:33:20 +0000 (Tue, 22 Mar 2016)
Log Message:
-----------
addressed borader impact; made format consistent
Modified Paths:
--------------
trunk/docs/papers/release/2016 PLoS ONE revision/Response to Reviewers.docx
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From: <sto...@us...> - 2016-03-22 16:32:07
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Revision: 4049
http://sourceforge.net/p/obi/code/4049
Author: stoeckert
Date: 2016-03-22 16:32:05 +0000 (Tue, 22 Mar 2016)
Log Message:
-----------
addressed broader impact
Modified Paths:
--------------
trunk/docs/papers/release/2016 PLoS ONE revision/Revised manuscript - with tracked changes.doc
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From: <jzh...@us...> - 2016-03-21 17:53:27
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Revision: 4048
http://sourceforge.net/p/obi/code/4048
Author: jzheng24
Date: 2016-03-21 17:53:25 +0000 (Mon, 21 Mar 2016)
Log Message:
-----------
move high resolution Figure 1 and 4 files from PLoS One submission to revision folder
Added Paths:
-----------
trunk/docs/papers/release/2016 PLoS ONE revision/Figure 1.tif
trunk/docs/papers/release/2016 PLoS ONE revision/Figure 4.tiff
Removed Paths:
-------------
trunk/docs/papers/release/2015 PLoS ONE submission/Figure 1.tif
trunk/docs/papers/release/2015 PLoS ONE submission/Figure 4.tiff
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From: <bjo...@us...> - 2016-03-21 16:53:44
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Revision: 4047
http://sourceforge.net/p/obi/code/4047
Author: bjoernpeters
Date: 2016-03-21 16:53:42 +0000 (Mon, 21 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/2016 PLoS ONE revision/Response to Reviewers.docx
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From: <bjo...@us...> - 2016-03-20 21:27:03
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Revision: 4046
http://sourceforge.net/p/obi/code/4046
Author: bjoernpeters
Date: 2016-03-20 21:27:02 +0000 (Sun, 20 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/2016 PLoS ONE revision/Response to Reviewers.docx
trunk/docs/papers/release/2016 PLoS ONE revision/Revised manuscript - with tracked changes.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYD
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
trunk/docs/papers/release/release.enl
Added Paths:
-----------
trunk/docs/papers/release/2016 PLoS ONE revision/~WRL0005.tmp
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From: <bjo...@us...> - 2016-03-20 17:48:18
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Revision: 4045
http://sourceforge.net/p/obi/code/4045
Author: bjoernpeters
Date: 2016-03-20 17:48:16 +0000 (Sun, 20 Mar 2016)
Log Message:
-----------
Removing the no longer utilized obi-edit files
Removed Paths:
-------------
trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi-edit.pprj.template
trunk/src/ontology/branches/obi-edit.repository.template
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From: <jzh...@us...> - 2016-03-15 18:58:36
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Revision: 4044
http://sourceforge.net/p/obi/code/4044
Author: jzheng24
Date: 2016-03-15 18:58:34 +0000 (Tue, 15 Mar 2016)
Log Message:
-----------
high resolution Figure 1
Modified Paths:
--------------
trunk/docs/papers/release/2015 PLoS ONE submission/Figure 1.tif
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From: <bjo...@us...> - 2016-03-14 16:24:10
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Revision: 4043
http://sourceforge.net/p/obi/code/4043
Author: bjoernpeters
Date: 2016-03-14 16:24:08 +0000 (Mon, 14 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
trunk/docs/papers/release/release.enl
Added Paths:
-----------
trunk/docs/papers/release/2016 PLoS ONE revision/
trunk/docs/papers/release/2016 PLoS ONE revision/Response to Reviewers.docx
trunk/docs/papers/release/2016 PLoS ONE revision/Revised manuscript - with tracked changes.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/pdf_index.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/pdf_index.frm
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYD
trunk/docs/papers/release/release.Data/rdb/pdf_index.MYI
trunk/docs/papers/release/release.Data/rdb/pdf_index.frm
trunk/docs/papers/release/release.Data/rdb/reftype.frm
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From: <bjo...@us...> - 2016-03-09 15:12:42
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Revision: 4042
http://sourceforge.net/p/obi/code/4042
Author: bjoernpeters
Date: 2016-03-09 15:12:41 +0000 (Wed, 09 Mar 2016)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/2015 PLoS ONE submission/Cover letter.docx
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From: <jzh...@us...> - 2016-03-07 14:12:02
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Revision: 4041
http://sourceforge.net/p/obi/code/4041
Author: jzheng24
Date: 2016-03-07 14:12:01 +0000 (Mon, 07 Mar 2016)
Log Message:
-----------
Redrew Figure 4 using Cmap Tool and made a high resolution tiff file
Modified Paths:
--------------
trunk/docs/papers/release/2015 PLoS ONE submission/Figure 4.tiff
Added Paths:
-----------
trunk/docs/papers/release/2015 PLoS ONE submission/Figure 4.cmap
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From: <sto...@us...> - 2016-02-11 20:40:33
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Revision: 4040
http://sourceforge.net/p/obi/code/4040
Author: stoeckert
Date: 2016-02-11 20:40:32 +0000 (Thu, 11 Feb 2016)
Log Message:
-----------
moved chimera as per tracker item 142
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <sto...@us...> - 2016-02-03 23:09:41
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Revision: 4039
http://sourceforge.net/p/obi/code/4039
Author: stoeckert
Date: 2016-02-03 23:09:40 +0000 (Wed, 03 Feb 2016)
Log Message:
-----------
added specimen family creation as per tracker item #778
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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