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Re: [Obi-role-branch] [Obi-devel] dispositoin branch call today 11 eastern on centra
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From: Fostel, J. (NIH/N. [C] <fo...@ni...> - 2009-04-27 18:01:23
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ok, here's the plan... (1) i finish writing the minutes capturing our dicussion (2) Melanie - can you help us set up an obi-dispositions list? (3) we comminucate with IDO about relevant terms (4) we continue OBI dispositions branch work -----Original Message----- From: Chris Stoeckert [mailto:sto...@pc...] Sent: Monday, April 27, 2009 1:55 PM To: Fostel, Jennifer (NIH/NIEHS) [C] Cc: 'Melanie Courtot'; Bjoern Peters; Richard H. Scheuermann, Ph.D.; OBI Developers; obi...@li... Subject: Re: [Obi-devel] [Obi-role-branch] dispositoin branch call today 11 eastern on centra I don't believe there is an IDO tracker. There is a mail list where some discussion has taken place and we could (and probably should) send our dispositions discussion points there. I thought it was a good discussion this morning (Jen, Oliver, myself) so don't want to see that get lost -especially since it used malaria as a use case and I work on that. :-) Chris On Apr 27, 2009, at 1:19 PM, Fostel, Jennifer (NIH/NIEHS) [C] wrote: > we need the terms, so any advice about how to get them would be great. > will submit them to IDO if someone can tell me where this tracker is > located. > > thanks! > > -----Original Message----- > From: Melanie Courtot [mailto:mco...@gm...] > Sent: Monday, April 27, 2009 1:12 PM > To: Bjoern Peters > Cc: Richard H. Scheuermann, Ph.D.; OBI Developers; > obi...@li... > Subject: Re: [Obi-role-branch] [Obi-devel] dispositoin branch call > today 11 eastern on centra > > Just to clarify the "labeled for future import": that means they are > not currently available in an external ontology and we can't mireot > them right? > > Could we try and submit on relevant trackers, and hope they would be > added quickly, allowing us to mireot them directly? If we create them > in OBI first, they will get an OBI ID, which means they will need to > be deprecated when will import later on. > And we all know how much fun that is to do :) > > Melanie > > > On 27-Apr-09, at 9:49 AM, Bjoern Peters wrote: > >> In principle, I agree with Richard. We have had to add some such >> terms though to be able to reference them when describing >> experiments. >> Minimally they should be labeled though as being out of the primary >> scope and for future import (like we have also done for some >> molecules). >> >> - Bjoern >> >> Richard H. Scheuermann, Ph.D. wrote: >>> None of these seem to be in the OBI domain. They appear to be >>> natural dispositions, which I believe are being handled by the >>> Infectious Disease Ontology. >>> >>> Richard >>> >>> On Apr 27, 2009, at 8:52 AM, Fostel, Jennifer (NIH/NIEHS) [C] wrote: >>> >>>> material for starting discussion >>>> host disposition = disposition to allow pathogen to enter the host >>>> organism pathogen disposition = disposition to enter the host >>>> organism and cause damage to host symbiote disposition = >>>> disposition to enter host orgasnism and benefit host organism and >>>> symbiote organism carrier disposition = disposition to allow entry >>>> for organism that is pathogen to another species, without harm or >>>> benefit to carrier organism >>>> >>>> The host range or host specificity of a parasite is the collection >>>> of hosts that an organism can utilize as a partner quality of >>>> pathogen >>>> >>>> Jennifer Fostel, Ph.D. >>>> CEBS Scientific Administrator >>>> Global Health Sector, SRA International, Inc >>>> >>>> Laboratory of Respiratory Biology >>>> NIEHS, NIH >>>> PO Box 12233 Mail Drop F1-05 >>>> 111 Alexander Drive >>>> Research Triangle Park NC 27709-2233 >>>> >>>> phone 919 541 5055 >>>> fax 919 541 1460 >>>> >>>> >>>> <dispositions.pdf> >>>> ------------------------------------------------------------------- >>>> - >>>> ---------- Crystal Reports - New Free Runtime and 30 Day Trial >>>> Check out the new simplified licensign option that enables >>>> unlimited royalty-free distribution of the report engine for >>>> externally facing server and web deployment. >>>> http://p.sf.net/sfu/ >>>> businessobjects_________________________________ >>>> ______________ >>>> Obi-role-branch mailing list >>>> Obi...@li... >>>> <mailto:Obi...@li...> >>>> https://lists.sourceforge.net/lists/listinfo/obi-role-branch >>> >>> -------------------------------------------------------------------- >>> - >>> --------------------------- >>> >>> Richard H. Scheuermann, Ph.D. >>> Chief, Division of Biomedical Informatics Director, Division of >>> Translational Pathology John H. Childers Professorship in Pathology >>> Department of Pathology U.T. Southwestern Medical Center >>> 5323 Harry Hines Blvd. >>> Dallas, TX 75390-9072 >>> >>> phone: 214-648-4115 >>> FAX: 214-648-4070 >>> email: ric...@ut... >>> <mailto:ric...@ut...> >>> http://pathcuric1.swmed.edu/Research/scheuermann.html >>> >>> >>> >>> -------------------------------------------------------------------- >>> - >>> --- >>> >>> -------------------------------------------------------------------- >>> - >>> --------- Crystal Reports - New Free Runtime and 30 Day Trial >>> Check out the new simplified licensign option that enables unlimited >>> royalty-free distribution of the report engine for externally >>> facing server and web deployment. >>> http://p.sf.net/sfu/businessobjects >>> -------------------------------------------------------------------- >>> - >>> --- >>> >>> _______________________________________________ >>> Obi-devel mailing list >>> Obi...@li... >>> https://lists.sourceforge.net/lists/listinfo/obi-devel >>> >> >> >> --------------------------------------------------------------------- >> - >> -------- Crystal Reports - New Free Runtime and 30 Day Trial >> Check out the new simplified licensign option that enables unlimited >> royalty-free distribution of the report engine for externally >> facing server and web deployment. >> http://p.sf.net/sfu/businessobjects >> _______________________________________________ >> Obi-role-branch mailing list >> Obi...@li... >> https://lists.sourceforge.net/lists/listinfo/obi-role-branch > > --- > Mélanie Courtot > TFL- BCCRC > 675 West 10th Avenue > Vancouver, BC > V5Z 1L3, Canada > > > > > > ---------------------------------------------------------------------- > -------- Crystal Reports - New Free Runtime and 30 Day Trial Check > out the new simplified licensign option that enables unlimited > royalty-free distribution of the report engine for externally > facing server and web deployment. > http://p.sf.net/sfu/businessobjects > _______________________________________________ > Obi-role-branch mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-role-branch > > ---------------------------------------------------------------------- > -------- Crystal Reports - New Free Runtime and 30 Day Trial Check > out the new simplified licensign option that enables unlimited > royalty-free distribution of the report engine for externally > facing server and web deployment. > http://p.sf.net/sfu/businessobjects > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel |
