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Re: [Obi-coord] [Obi-devel] release manuscript
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From: Frank G. <fg...@gm...> - 2009-03-24 16:33:03
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I don't think there is a problem of it being too long at the moment. When we get to a stage we believe this to be the complete first draft we can start to shorten in during the next review stage, and appropriate for NBT. Frank On Tue, Mar 24, 2009 at 4:17 PM, Susanna Sansone <sa...@eb...> wrote: > It is NBT, and is indeed way too long. > Imho, several sections can just be references (naming conventions), also the > use cases - a key part- are detailed but still general, not real examples of > OBI in use. > My 2 cents too.... > S > > Richard H. Scheuermann, Ph.D. wrote: > > Bjoern, > Can you remind me to which journal we are planning on submitting this. > There is a lot of content devoted to the process, and much of this is up > front in the manuscript draft. It wasn't until page 12 that we start to get > into the ontology content. I think we need to agree on whether the ontology > content or the development process should take center stage in this > manuscript. > I also suspect that once all of the proposed sections are completed it is > going to be way too long. While I think that we can condense the current > content considerably (e.g. the selection of the TLO could easily be > condensed to focus on why BFO was selected and leave out while the other > candidate's were not), we may want to decide on what the focus of this > manuscript will be so that we can focus on completing the content that will > likely be included in the final draft. > My 2 cents .... > Richard > On Mar 24, 2009, at 8:52 AM, Bjoern Peters wrote: > > I just committed an updated version that includes sections supplied by > jennifer (3rd use case + cross branch example). > - Bjoern > Bjoern Peters wrote: > > Hi all, > I have just committed the next version of the obi manuscript. in > http://obi.svn.sourceforge.net/viewvc/obi/trunk/docs/papers/release/Release-Manuscript-Master-bp.doc > It is still missing many things, and I have not gotten as far in > polishing as I hoped, but today was my deadline for getting the next > version out, and I don't want to just sit on it. > Most importantly: If you have send me something for the manuscript, > please check if you find it in the current version. If not, please > remind me to put it in. > Also important: If you have an outstanding section, please check what > you think you need to complete it. I want to discuss the state of the > manuscript in Wednesday's call. > This is what I did compared to the last version > - Acted upon Larissa's comments, or added them as comment bubbles to the > text. This primarily led to a rewritten introduction. > - removed a few redundant sentences > - included Daniel's edits > - added Melanies branch figure > - added branch descriptions (PlanAndPlannedProcess +data transformation) > - added use cases (James, mine) > I have a request: There are some sections that point out who > specifically contributed what. I would like either a) remove those > completely or b) move all specific mention of names into an > acknowledgement section. If we leave them in the text, we run the risk > of adding to each section who contributed what, which the average reader > will not care about at all. > - Bjoern > > ------------------------------------------------------------------------------ > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly and > easily build your RIAs with Flex Builder, the Eclipse(TM)based development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > _______________________________________________ > Obi-coord mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-coord > > > ------------------------------------------------------------------------------ > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly and > easily build your RIAs with Flex Builder, the Eclipse(TM)based development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > _______________________________________________ > Obi-coord mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-coord > > ------------------------------------------------------------------------------------------------ > Richard H. Scheuermann, Ph.D. > Chief, Division of Biomedical Informatics > Director, Division of Translational Pathology > John H. Childers Professorship in Pathology > Department of Pathology > U.T. Southwestern Medical Center > 5323 Harry Hines Blvd. > Dallas, TX 75390-9072 > phone: 214-648-4115 > FAX: 214-648-4070 > email: ric...@ut... > http://pathcuric1.swmed.edu/Research/scheuermann.html > > > ________________________________ > ------------------------------------------------------------------------------ > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly and > easily build your RIAs with Flex Builder, the Eclipse(TM)based development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > > ________________________________ > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel > > > -- > Susanna-Assunta Sansone, PhD > > NET Project - Coordinator > > www.ebi.ac.uk/net-project > > The European Bioinformatics Institute email: sa...@eb... > EMBL Outstation - Hinxton direct: +44 (0)1223 494 691 > Wellcome Trust Genome Campus fax: +44 (0)1223 492 620 > Cambridge CB10 1SD, UK room: A3-140 > > > > ------------------------------------------------------------------------------ > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly and > easily build your RIAs with Flex Builder, the Eclipse(TM)based development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > _______________________________________________ > Obi-devel mailing list > Obi...@li... > https://lists.sourceforge.net/lists/listinfo/obi-devel > > -- Frank Gibson, PhD http://peanutbutter.wordpress.com/ |