MUMmer

MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

Project Samples

ordered and oriented multiplot of finished vs. draft seqs

percent-identity color coded dotplot of a promer alignment

unordered multiplot of finished vs. draft sequence alignment

percent identity plot (bot) compared with gene models (top)

Project Activity

See All Activity >

License

Artistic License

Follow MUMmer

MUMmer Web Site

Other Useful Business Software

Get Avast Free Antivirus with 24/7 AI-powered online scam detection

Get protection for today’s online threats. Free.

Award-winning antivirus protection, as well as protection against online scams, dangerous Wi-Fi connections, hacked accounts, and ransomware. It includes Avast Assistant, your built-in AI partner, which gives you help with suspicious online messages, offers, and more.

Free Download

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

elenostapen Posted 2012-10-22

Great project! Thanks for amazing work!
attilaatalar Posted 2012-10-22

Very helpful, fast and easy product!
svetnickol Posted 2012-10-21

This is a wonderful project. TNX!
oid-2888560 Posted 2010-12-03

great set of tools
torst Posted 2010-05-02

No genome bioinformatican should be without this tool.

Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Advanced End Users

User Interface

Command-line

Programming Language

Perl, C++, C

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2005-03-05

Similar Business Software

MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software
Universal Analysis Software (UAS)

Universal Analysis Software (UAS) provides a platform for analyzing and managing forensic genomic data, simplifying complex bioinformatics. The UAS is an all-inclusive solution, containing analysis modules supporting all current ForenSeq workflows including ForenSeq MainstAY, ForenSeq...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software