Search Results for "mummer"
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Showing 5 open source projects for "mummer"
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Dun and Bradstreet Connect simplifies the complex burden of data managementThe amount, speed, and types of data created in today’s world can be overwhelming. With D&B Connect, you can instantly benchmark, enrich, and monitor your data against the Dun & Bradstreet Data Cloud to help ensure your systems of record have trusted data to fuel growth.
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core_ope
Tools that from raw assembly to core genomic analysis
Eight PERL scripts. remap_qualifiedASM.pl strict_filter.pl - Refine the MUMmer alignment aln_extract.pl - Extract sequence from MUMmer alignment core_genome_build.pl - Build (relaxed) core genome based on sequences in MUMmer alignment core_remove_region.pl - Remove repetitive regions or other regions core_map2snp.pl - Extract SNPs from the core genome nucmer_filter.pl - A integrated script that run MUMmer to generate a mapped sequence core_snp2fas.pl - Build a SNP-only alignment based on SNPs extracted. -
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MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
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coords-view
Graphically displays nucmer/mummer mapping results
Displays mummer/nucmer mappings and prints PNG to stdout via the "show-coords -lcdTH" output. The output file is <coords-output>.png. Command line options allow for different features when producing the image. Within the code there are comment blocks which give examples of how to further customize it i.e. grouping based on name similarity, color, etc. -
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MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
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Next-Gen Encryption for Post-Quantum Security | CLEAR by Quantum KnightCLEAR by Quantum Knight is a FIPS-140-3 validated encryption SDK engineered for enterprises requiring top-tier security. Offering robust post-quantum cryptography, CLEAR secures files, streaming media, databases, and networks with ease across over 30 modern platforms. Its compact design, smaller than a single smartphone image, ensures maximum efficiency and low energy consumption.
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Parallel version of MUMMER v. 3.14, a genome-level alignment tool used to assemble complete genomes.
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