Showing 5 open source projects for "mummer"

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    Our robust pre-built connectors and our no-code, drag-and-drop interface makes it easy and fast to automatically sync vendors, invoices, and invoice payment data between Tipalti and your ERP or accounting software.
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  • 1
    MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
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    Downloads: 149 This Week
    Last Update:
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  • 2

    core_ope

    Tools that from raw assembly to core genomic analysis

    Eight PERL scripts. remap_qualifiedASM.pl strict_filter.pl - Refine the MUMmer alignment aln_extract.pl - Extract sequence from MUMmer alignment core_genome_build.pl - Build (relaxed) core genome based on sequences in MUMmer alignment core_remove_region.pl - Remove repetitive regions or other regions core_map2snp.pl - Extract SNPs from the core genome nucmer_filter.pl - A integrated script that run MUMmer to generate a mapped sequence core_snp2fas.pl - Build a SNP-only alignment based...
    Downloads: 0 This Week
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  • 3

    coords-view

    Graphically displays nucmer/mummer mapping results

    Displays mummer/nucmer mappings and prints PNG to stdout via the "show-coords -lcdTH" output. The output file is <coords-output>.png. Command line options allow for different features when producing the image. Within the code there are comment blocks which give examples of how to further customize it i.e. grouping based on name similarity, color, etc. This program is aimed at providing full customization within the limits of the Bio-Graphics module. Current version supported is Bio-Graphics...
    Downloads: 0 This Week
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  • 4
    MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
    Downloads: 1 This Week
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    Safety Management Platform | SafetyIQ

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  • 5
    Parallel version of MUMMER v. 3.14, a genome-level alignment tool used to assemble complete genomes.
    Downloads: 0 This Week
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