Re: [micro-manager-general] Spam (8.588):Re: Spam (12.588):Re: Steps to get a functional plugin, lesson n+1

[PAVAK S. <pavak@g.ucla.edu>]

Hi Carlos,

Are you talking about the rectangle in the upper left corner of the image?
That may just be the indicator that the window the image is displayed in is
too small for the display scaling of the image. Try hitting the buttons
that make the image display larger and smaller in the corner of the display
window and it should go away once the window is properly resized.

Pavak

On Fri, Apr 10, 2020, 4:57 AM Carlos G Mendioroz <tr...@ac...> wrote:

> Nico Stuurman @ 10/04/2020 00:36 -0300 dixit:
> > Hi Carlos,
> >> Wow, that works. Not bad, thanks.
> >> You may take it for a ride :) Work in progress, but useful state, I
> >> guess. Is it ok to post here the jar ? Sources ? 22k for the jar, 15k
> >> for 2 .java source files.
> >
> > Doubtful that the jar will make it through email.  If you have someplace
> > that you can provide it link to, that would be great, you can include
> > the sources in your email, or put them in a public place such as a
> > github repository.
> >
> > It would be ideal to fork the micro-manager github repository, since
> > that would let you generate a pull request, making it easy to add your
> > code to Micro-Manager.
>
> Ok, I will. I'm a little rusty in uploading to a code repo, but will do.
> In the mean time, here is a link for you (or anybody else) to try:
>
>         https://www.dropbox.com/s/63w8556u6dxj4vp/RTIntensities.jar?dl=0
>
> Couple of things missing to make it a real usefull tool though:
>
> * marking on the window.
> Something that has bothered me, but not much, is a bluish rectangle that
> uM puts in the data window. I don't know where it comes from, nor what
> it represent. But trying to use the ImageJ processor to mark the ROIs
> did not work.
>
>         processor.setLineWidth(1);
>         processor.setColor(Color.red);
>
>         processor.setRoi(roi_[i]);
>         v = processor.getStats().mean;
>         data[i].add((double)imagesReceived_, v, false);
>         processor.draw(roi_[i]);
>
> That, or drawRoi(), do not make it.
>
> * ROI set saving.
> The ROI set should go into the datastore somehow, so the data can be
> reproduced afterwards. I have't looked at that part yet, but I'm trying
> to maximize the SNR of this message :)
>
> TIA,
>
> --
> Carlos G Mendioroz  <tr...@ac...>
>
>
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