Re: [micro-manager-general] Spam (8.588):Re: Spam (12.588):Re: Steps to get a functional plugin, lesson n+1

[Carlos G M. <tr...@ac...>]

Nico Stuurman @ 10/04/2020 00:36 -0300 dixit:
> Hi Carlos,
>> Wow, that works. Not bad, thanks.
>> You may take it for a ride :) Work in progress, but useful state, I
>> guess. Is it ok to post here the jar ? Sources ? 22k for the jar, 15k
>> for 2 .java source files.
> 
> Doubtful that the jar will make it through email.  If you have someplace
> that you can provide it link to, that would be great, you can include
> the sources in your email, or put them in a public place such as a
> github repository.
> 
> It would be ideal to fork the micro-manager github repository, since
> that would let you generate a pull request, making it easy to add your
> code to Micro-Manager.

Ok, I will. I'm a little rusty in uploading to a code repo, but will do.
In the mean time, here is a link for you (or anybody else) to try:

	https://www.dropbox.com/s/63w8556u6dxj4vp/RTIntensities.jar?dl=0

Couple of things missing to make it a real usefull tool though:

* marking on the window.
Something that has bothered me, but not much, is a bluish rectangle that
uM puts in the data window. I don't know where it comes from, nor what
it represent. But trying to use the ImageJ processor to mark the ROIs
did not work.

	processor.setLineWidth(1);
	processor.setColor(Color.red);

	processor.setRoi(roi_[i]);
	v = processor.getStats().mean;
	data[i].add((double)imagesReceived_, v, false);
	processor.draw(roi_[i]);

That, or drawRoi(), do not make it.

* ROI set saving.
The ROI set should go into the datastore somehow, so the data can be
reproduced afterwards. I have't looked at that part yet, but I'm trying
to maximize the SNR of this message :)

TIA,

-- 
Carlos G Mendioroz  <tr...@ac...>