Re: [micro-manager-general] ImageJ integration

[Matthijs D. <mat...@ki...>]

Hi Carlos,

If it's any help, a few years ago I wrote a plugin for 1.4 that recorded a fixed number of images by hooking into the image acquisition pipeline, and which could graph mean intensity values over ROIs selected in ImageJ afterwards. Not exactly what you're looking for, and it contains a fair number of design choices I would not make again in hindsight (when it comes to MM, I mostly throw things at the wall and see what doesn't blow up) but from your description it sounds like it does a few things you're after and might serve as inspiration.

The source code is available on github, at https://github.com/MattNeuro/CalciumImaging/tree/master/src/se/karolinska/corticostriatal/calciumImaging

I may one day try to update it to work with MM2.0, but it's not in my plans for the near future.

All the best,

  Matthijs

________________________________
From: Carlos G Mendioroz <tr...@ac...>
Sent: Monday, March 30, 2020 9:34 PM
To: Micro-Manager General <mic...@li...>; Nico Stuurman <nic...@uc...>
Subject: Re: [micro-manager-general] ImageJ integration


Nico,
do live mode events get generated by MDA ?
Do you have a template plugin suggestion that I can use as a starting
point ?
I know Java and C++, but coming up with a code design ... I don't want
to reinvent the wheel.

TIA,

--
Carlos G Mendioroz  <tr...@ac...>


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