[micro-manager-general] ImageJ integration

[Carlos G M. <tr...@ac...>]

Hi,
as I'm trying to get a realtime (i.e. live) graph of pinhole
intensities, I "discovered" that ImageJ seems not aware that
micro-manager (uM?) has a stack of images available and is only aware of
the displayed ones.

(I'm not a uM expert, not even a user, neither an ImageJ one, so I may
be quite wrong)

ImageJ has some tools that work on stacks or hyperstacks that do not
recognize uM data as such (i.e. ImageJ sees the images as 2D data).

I've seen many tools that bridge this gap, but all of them seem to work
on static data (i.e. done experiments) but I would like to use them on
live ones.

Has anybody dealt with this already ? Is there a uM datastore -> ImageJ
hyperstack bridge of sorts ? I do not want to reinvent the wheel...

Thanks in advance,
-- 
Carlos G Mendioroz  <tr...@ac...>