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From: Roni W. <ron...@gm...> - 2011-10-09 09:20:12
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Hi, I have been using MESA for I while now, and I wanted to start plotting using Tioga. I installed Tioga apparently successfully. Ran ruby ts_Tioga.rb and worked well. I ran the sample test_suite/15M_dynamo. I try to run e.g. ruby history_by_step.rb in the directory star_history of the above run. I get an output saying: Read ../LOGS/star.log Age 819048.300.... But, no output plot is created. Obviously I'm doing something basically wrong. Thanks for any help. Roni |
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From: Max K. <ka...@rp...> - 2011-10-06 23:35:29
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I can confirm that I've seen a very similar issue using gfortran 4.6.1 on Ubuntu with version 36** (it points to malloc upon crashing when pgstar is activated, but the demos also ran fine for me), but haven't been able to track down the problem at all. Max Katz Rensselaer Polytechnic Institute M.S. Physics, 2011 On Thu, Oct 6, 2011 at 6:18 PM, Bill Paxton <pa...@ki...> wrote: > Hi, > > I just tried to run pgplot with with mesa/star after recompiling both mesa > and pgplot with 4.6.1 on my mac. > pgplot runs the /XWIN demo fine, but when i try to run it with star I get > this as soon as it starts up: > > > star(64896,0x7fff70fa8cc0) malloc: *** error for object 0x10a804208: > incorrect checksum for freed object - object was probably modified after > being freed. > *** set a breakpoint in malloc_error_break to debug > ./re: line 13: 64896 Abort trap ./star > > > Any ideas? > > Thanks, > Bill > > > > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > |
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From: Bill P. <pa...@ki...> - 2011-10-06 22:18:16
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Hi, I just tried to run pgplot with with mesa/star after recompiling both mesa and pgplot with 4.6.1 on my mac. pgplot runs the /XWIN demo fine, but when i try to run it with star I get this as soon as it starts up: star(64896,0x7fff70fa8cc0) malloc: *** error for object 0x10a804208: incorrect checksum for freed object - object was probably modified after being freed. *** set a breakpoint in malloc_error_break to debug ./re: line 13: 64896 Abort trap ./star Any ideas? Thanks, Bill |
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From: Kai S. <ks...@lb...> - 2011-10-05 23:05:07
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Thanks for the comments. Yes, that did the trick! Kai On Wed, Oct 5, 2011 at 3:59 PM, Peter Perakis <per...@gm...> wrote: > Hi, > > I was able to successfully compile version 3635 earlier today with gfortran > 4.6.1 on a Mac OSX 10.6.8. The only thing I could suggest is to make sure > you are using the correct number of threads with the command: export > OMP_NUM_THREADS= > then install. > > -Peter > > On Wed, Oct 5, 2011 at 5:38 PM, Kai Song <ks...@lb...> wrote: > >> Hi All, >> >> On a 64bit Centos-5.6 machine, I am not able to compile mesa revision 3635 >> with gfortran-4.6.1. >> >> The error messege as follow: >> ============= >> ... >> FAILED >> >> >> /global/home/users/jwschwab/mesa/mtx/test >> TEST FAILED -- compare test_output to tmp.txt >> >> >> /global/home/users/jwschwab/mesa/mtx >> ./build_and_test FAILED >> >> ============= >> >> For my gfrotran: >> [jwschwab@ln000 mesa]$ gfortran -v >> Using built-in specs. >> COLLECT_GCC=gfortran >> >> COLLECT_LTO_WRAPPER=/global/home/users/jwschwab/applications/gcc/4.6.1/libexec/gcc/x86_64-unknown-linux-gnu/4.6.1/lto-wrapper >> Target: x86_64-unknown-linux-gnu >> Configured with: ../gcc-4.6.1/configure >> --prefix=/global/home/users/jwschwab/applications/gcc/4.6.1 --enable-shared >> --enable-threads=posix --enable-checking=release --with-system-zlib >> --enable-__cxa_atexit --disable-libunwind-exceptions >> --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,fortran >> --disable-dssi --disable-plugin >> Thread model: posix >> gcc version 4.6.1 (GCC) >> >> >> Do you know what's wrong with the build? Please let me know if you need >> more information. >> >> Thanks, >> >> Kai >> >> -- >> Kai Song >> <ks...@lb...> 1.510.495.2180 >> 1 Cyclotron Rd. Berkeley, CA94720, MS-50C 3396 >> High Performance Computing Services (HPCS) >> Lawrence Berkeley National Laboratory - http://scs.lbl.gov >> >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2dcopy1 >> _______________________________________________ >> mesa-users mailing list >> mes...@li... >> https://lists.sourceforge.net/lists/listinfo/mesa-users >> >> > -- Kai Song <ks...@lb...> 1.510.495.2180 1 Cyclotron Rd. Berkeley, CA94720, MS-50C 3396 High Performance Computing Services (HPCS) Lawrence Berkeley National Laboratory - http://scs.lbl.gov |
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From: Peter P. <per...@gm...> - 2011-10-05 23:00:00
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Hi, I was able to successfully compile version 3635 earlier today with gfortran 4.6.1 on a Mac OSX 10.6.8. The only thing I could suggest is to make sure you are using the correct number of threads with the command: export OMP_NUM_THREADS= then install. -Peter On Wed, Oct 5, 2011 at 5:38 PM, Kai Song <ks...@lb...> wrote: > Hi All, > > On a 64bit Centos-5.6 machine, I am not able to compile mesa revision 3635 > with gfortran-4.6.1. > > The error messege as follow: > ============= > ... > FAILED > > > /global/home/users/jwschwab/mesa/mtx/test > TEST FAILED -- compare test_output to tmp.txt > > > /global/home/users/jwschwab/mesa/mtx > ./build_and_test FAILED > > ============= > > For my gfrotran: > [jwschwab@ln000 mesa]$ gfortran -v > Using built-in specs. > COLLECT_GCC=gfortran > > COLLECT_LTO_WRAPPER=/global/home/users/jwschwab/applications/gcc/4.6.1/libexec/gcc/x86_64-unknown-linux-gnu/4.6.1/lto-wrapper > Target: x86_64-unknown-linux-gnu > Configured with: ../gcc-4.6.1/configure > --prefix=/global/home/users/jwschwab/applications/gcc/4.6.1 --enable-shared > --enable-threads=posix --enable-checking=release --with-system-zlib > --enable-__cxa_atexit --disable-libunwind-exceptions > --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,fortran > --disable-dssi --disable-plugin > Thread model: posix > gcc version 4.6.1 (GCC) > > > Do you know what's wrong with the build? Please let me know if you need > more information. > > Thanks, > > Kai > > -- > Kai Song > <ks...@lb...> 1.510.495.2180 > 1 Cyclotron Rd. Berkeley, CA94720, MS-50C 3396 > High Performance Computing Services (HPCS) > Lawrence Berkeley National Laboratory - http://scs.lbl.gov > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > |
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From: Kai S. <ks...@lb...> - 2011-10-05 22:38:59
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Hi All, On a 64bit Centos-5.6 machine, I am not able to compile mesa revision 3635 with gfortran-4.6.1. The error messege as follow: ============= ... FAILED /global/home/users/jwschwab/mesa/mtx/test TEST FAILED -- compare test_output to tmp.txt /global/home/users/jwschwab/mesa/mtx ./build_and_test FAILED ============= For my gfrotran: [jwschwab@ln000 mesa]$ gfortran -v Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/global/home/users/jwschwab/applications/gcc/4.6.1/libexec/gcc/x86_64-unknown-linux-gnu/4.6.1/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.6.1/configure --prefix=/global/home/users/jwschwab/applications/gcc/4.6.1 --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,fortran --disable-dssi --disable-plugin Thread model: posix gcc version 4.6.1 (GCC) Do you know what's wrong with the build? Please let me know if you need more information. Thanks, Kai -- Kai Song <ks...@lb...> 1.510.495.2180 1 Cyclotron Rd. Berkeley, CA94720, MS-50C 3396 High Performance Computing Services (HPCS) Lawrence Berkeley National Laboratory - http://scs.lbl.gov |
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From: Amy m. <amy...@gm...> - 2011-10-04 16:44:19
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Hi
All
Compiling Mesa 7.10.3 on centos 5.7 gives me this error.
> glxext.c: In function ‘__glXWireToEvent’:
>*glxext.c:141: error: ‘xGLXBufferSwapComplete’ undeclared (first use in this*function)
>*glxext.c:141: error: (Each undeclared identifier is reported only once*>*glxext.c:141: error: for each function it appears in.)*>*glxext.c:141: error: ‘awire’ undeclared (first use in this function)*>*glxext.c:141: error: expected expression before ‘)’ token*>*glxext.c:144: error: ‘CARD64’ undeclared (first use in this function)*>*glxext.c:144: error: expected ‘)’ before ‘awire’*>*glxext.c:145: error: expected ‘)’ before ‘awire’*>*glxext.c:146: error: expected ‘)’ before ‘awire’*
and xGLXBufferSwapComplete is defined in
/usr/local/glproto/include/GL/glxproto.h which
is in the include path as i have included the glproto in the configue
options. I could not understand
why make command ignores glproto include path. GLproto version is 1.4.11
Any suggestion will nicely appreciated
Amy
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From: Ehsan M. <mor...@ia...> - 2011-09-24 15:49:29
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<html><div> Dear MESA friends, Hi. I successfully compiled my MESA 3633 with pgstar on Lion 10.7 with ifort 12.0.1 I compiled pgplot with ifort + gcc and added this line in my .bash_profile export PGPLOT_DIR=/Users/ehsan/programs/pgplot In my inlist, I have activated pgstar as &pgstar read_extra_pgstar_inlist1 = .true. extra_pgstar_inlist1_name = 'ehsan_pgstar' In my inlist_work, I have: pgstar_flag = .true. and in my ehsan_pgstar, I have already set: MAIN_win_flag = .true. however, the pgstar window does not show up once I start a run, and there is also no error in the terminal. I suppose there are still more steps to take to set it up. I would be grateful to receive your suggestions. Regards. Moravveji, Ehsan. Ph.D student of Astrophysics. Department of Physics, Institute for Advanced Studies in Basic Sciences (IASBS), GavaZang Road, Zanjan 45137-66731, Iran. Office: (+98)241-415 2118 Fax: (+98)241-415 2104 http://iasbs.ac.ir/students/moravveji -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. |
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From: Ken S. <ke...@as...> - 2011-09-23 18:59:20
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Not sure if anyone else had this problem, but I figured out the solution with help from Aaron. In my star/private/opacities.f file, the call to s% other_kap_get_Type2() was missing the line "lnfree_e, d_lnfree_e_dlnRho, d_lnfree_e_dlnT, &". On Mon, Sep 19, 2011 at 12:38 PM, Ken Shen <ke...@as...> wrote: > Hi all. I wanted to modify the opacity used in MESA/star in a way > that the current controls can't do, so I tried to edit my > run_star_extras.f as outlined in other_kap.f. Namely, I added these > lines to the extra_controls subroutine in run_star_extras.f: > > > ---------------- > s% use_other_kap = .true. > s% other_kap_get_Type1 => my_other_kap_get_Type1 > ---------------- > > > As a simple test, my_other_kap_get_Type1 looks like this: > > > ---------------- > subroutine my_other_kap_get_Type1( & > id, handle, zbar, X, Zbase, log10_rho, log10_T, & > species, chem_id, net_iso, xa, & > lnfree_e, d_lnfree_e_dlnRho, d_lnfree_e_dlnT, & > kap, dln_kap_dlnRho, dln_kap_dlnT, ierr) > use kap_lib, only : kap_get_Type1 > > ! INPUT > integer, intent(in) :: id ! star id if available; 0 otherwise > integer, intent(in) :: handle ! from alloc_other_kap_handle > real*8, intent(in) :: zbar ! average ion charge > real*8, intent(in) :: X ! the hydrogen mass fraction > real*8, intent(in) :: Zbase ! the metallicity > real*8, intent(in) :: log10_rho ! the density > real*8, intent(in) :: log10_T ! the temperature > integer, intent(in) :: species > integer, pointer :: chem_id(:) ! maps species to chem id > ! index from 1 to species > ! value is between 1 and num_chem_isos > integer, pointer :: net_iso(:) ! maps chem id to species number > ! index from 1 to num_chem_isos (defined in chem_def) > ! value is 0 if the iso is not in the current net > ! else is value between 1 and number of species in current net > real*8, intent(in) :: xa(:) ! mass fractions > double precision, intent(in) :: lnfree_e, d_lnfree_e_dlnRho, > d_lnfree_e_dlnT > ! free_e := total combined number per nucleon of free > electrons and positrons > > ! OUTPUT > real*8, intent(out) :: kap ! opacity > real*8, intent(out) :: dln_kap_dlnRho ! partial derivative at > constant T > real*8, intent(out) :: dln_kap_dlnT ! partial derivative at > constant Rho > integer, intent(out) :: ierr ! 0 means AOK. > > > call kap_get_Type1( & > handle, zbar, X, Zbase, log10_rho, log10_T, & > lnfree_e, d_lnfree_e_dlnRho, d_lnfree_e_dlnT, & > kap, dln_kap_dlnRho, dln_kap_dlnT, ierr) > > end subroutine my_other_kap_get_Type1 > ---------------- > > > However, these changes cause the run to exit immediately, without > producing any error messages: > > > ---------------- > DATE: 2011-09-19 > TIME: 12:27:28 > read inlist_wd > set_eos_PC_parameters > mass_fraction_limit_for_PC 1.0000000000000000E-02 > logRho1_PC_limit 2.0000000000000000E+01 > logRho2_PC_limit 2.0000000000000000E+01 > log_Gamma_all_HELM 1.6020600000000000E+00 > log_Gamma_all_PC 1.9030899999999999E+00 > PC_min_Z 9.9900000000000000E-01 > load saved model 1_0_x12_0_50.mod > > DATE: 2011-09-19 > TIME: 12:27:32 > ---------------- > > > From inserting debugging messages, I know the lines "s% use_other_kap > = .true." and "s% other_kap_get_Type1 => my_other_kap_get_Type1" are > reached, but my_other_kap_get_Type1 doesn't ever seem to be called. > Any thoughts out there? > > > Thanks, > Ken > |
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From: Peter P. <per...@gm...> - 2011-09-22 17:07:04
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Hi all, I also updated to 3633 and was able to successfully install Mesa with gfortran 4.6.1. Good luck to all. -Peter On Thu, Sep 22, 2011 at 10:34 AM, Larry Pinsonneault <lpi...@ha...>wrote: > ** > When I upgraded to Mesa release 3633, my install was successful. > > Adding 'export OMP_NUM_THREADS=4' (4 threads for my machine) to my > .bashrc had previously been required. > > Larry Pinsonneault > > > > > On 09/21/2011 04:08 PM, Larry Pinsonneault wrote: > > Hi, > > I get the same result as Aaron and Phil. The installation fails in rates > with > exactly the same six mismatches. > > I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba Satellite.A665. > > Larry Pinsonneault > > On 09/19/2011 09:05 AM, Aaron Dotter wrote: > > Hi, > > I'll add my tale of woe to Phil's. Everything goes fine until rates. > Looks like Phil and I are consistent, at least. > > /Users/dotter/mesa3611/rates > building rates package. > > make: `librates.a' is up to date. > make: `librates.a' is up to date. > gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates > -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum -lutils > -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make > -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum > -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > > 58c58 > < rne20ap_to_mg24 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > rne20ap_to_mg24 1.3318310086100496E-08 > 60c60 > < rmg24ap_to_si28 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > rmg24ap_to_si28 2.6558494648638122E-06 > 62c62 > < r_c12_to_he4_he4_he4 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > r_c12_to_he4_he4_he4 1.4771305847143582E-26 > 63c63 > < r_ne20_ga_o16 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > r_ne20_ga_o16 3.8122575515639085E-16 > > /Users/dotter/mesa3611/rates/test > TEST FAILED -- compare test_output to tmp.txt > > > /Users/dotter/mesa3611/rates > ./build_and_test FAILED > > This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2. > > Aaron > > > > > On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...> wrote: > >> >> Greetings, >> >> I encountered a compilation error for version 3611, for Mac OS X (10.6.8), >> with gfortran 4.6.1: >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> 58c58 >> < rne20ap_to_mg24 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > rne20ap_to_mg24 1.3318310086100496E-08 >> 60c60 >> < rmg24ap_to_si28 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > rmg24ap_to_si28 2.6558494648638122E-06 >> 62c62 >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> 63c63 >> < r_ne20_ga_o16 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > r_ne20_ga_o16 3.8122575515639085E-16 >> >> /Users/arras/stars/mesa/rates/test >> TEST FAILED -- compare test_output to tmp.txt >> >> >> /Users/arras/stars/mesa/rates >> ./build_and_test FAILED >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >> >> Comparing the two files gave: >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output tmp.txt >> 1c1 >> < >> --- >> > >> 5c5 >> < >> --- >> > >> 21c21 >> < rn15pg_aux 3.0733146900102957E+02 >> --- >> > rn15pg_aux 3.0733146900102952E+02 >> 26c26 >> < r_mg24_ag_si28 7.3991076437333121E-04 >> --- >> > r_mg24_ag_si28 7.3991076437333111E-04 >> 31c31 >> < >> --- >> > >> 33,34c33,34 >> < >> < >> --- >> > >> > >> 38c38 >> < >> --- >> > >> 58c58 >> < rne20ap_to_mg24 1.3318310086100496E-08 >> --- >> > rne20ap_to_mg24 0.0000000000000000E+00 >> 60c60 >> < rmg24ap_to_si28 2.6558494648638122E-06 >> --- >> > rmg24ap_to_si28 0.0000000000000000E+00 >> 62,64c62,64 >> < r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> < r_ne20_ga_o16 3.8122575515639085E-16 >> < >> --- >> > r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> > r_ne20_ga_o16 0.0000000000000000E+00 >> > >> 66,69c66,69 >> < >> < FL_epsnuc_3alf 1.1675035548327446E+21 >> < >> < >> --- >> > >> > FL_epsnuc_3alf 1.1675035548327443E+21 >> > >> > >> 73c73 >> < >> --- >> > >> 75c75 >> < >> --- >> > >> 77c77 >> < >> --- >> > >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> So they only differ by a tiny amount. >> >> Oddly, the first time I tried the installation it barfed on the mtx >> routine. Then just for the fun of it I tried doing ./install again and it >> got through mtx, >> but then stopped on rates, and is stuck there no matter how many times I >> try ./install. >> >> Help! >> >> cheers, >> >> Phil >> >> >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs & more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> _______________________________________________ >> mesa-users mailing list >> mes...@li... >> https://lists.sourceforge.net/lists/listinfo/mesa-users >> > > > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today!http://p.sf.net/sfu/rim-devcon-copy1 > > > _______________________________________________ > mesa-users mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/mesa-users > > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > |
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From: Bill P. <pa...@ki...> - 2011-09-22 15:55:26
|
Hello again, Have you tried the experiment of running 2 gfortran versions of star simultaneously with multithreads? Did you see the problem that I see on my mac? If so, please try this fix. The gfortran multithreading problem goes away (at least on my machine) if I use this file: put it in mesa/mtx/private then cd mtx/test ./mk ./ck ./export Then cd /star/test ./mk ./ck ./export Then remake your applications that use star Then try running 2 instances of star in different terminals simultaneously with multithreads. In the previous version of the file, we were trying some different OpenMP directives in hope of getting better performance. Didn't make any difference for performance, but it did apparently trigger a problem in the gfortran runtime support for OpenMP -- at least that's what it looks like currently. --Bill Begin forwarded message: > From: Bill Paxton <pa...@ki...> > Date: September 22, 2011 7:42:03 AM PDT > To: Mesa users <mes...@li...> > Subject: [mesa-users] gfortan multithreading problems with mesa > > Hi, > > I've just noticed something suggesting a multithreading issue with mesa when compiled with gfortran. > It is undoubtedly a bug on my part, but I haven't tracked it down yet. It might be behind some > ot the installation problems we've been having. > > Basically, when compiled with gfortran (but not with ifort) I can quickly cause a convergence failure in a mesa star > at any time during a run simply by starting up another run simultaneously in another terminal. However, if I change > to a single thread, they don't interact and don't run into trouble. > > I'll look into this, but in the meantime, you might try setting OMP_NUM_THREADS to 1 and see if the install goes better. > > -Bill > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Bill P. <pa...@ki...> - 2011-09-22 15:48:25
|
Hi, Wonderful! I'm glad things are clearing up. -Bill On Sep 22, 2011, at 7:40 AM, Piotr Śródka wrote: > OK, > I missed your attachment and deleted "-no-cpp-precomp" by myself from the > mesa/mtx/make/makefile and it works! > Mesa 3633 installed succesfully on Fedora 15 64bit with ifort 12.1.0. > I also needed >export OMP_NUM_THREADS=4 > > Thank you, > Piotrek > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Larry P. <lpi...@ha...> - 2011-09-22 15:35:07
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
When I upgraded to Mesa release 3633, my install was successful.<br>
<br>
Adding '<span class="Apple-style-span" style="font-family:
arial,sans-serif; font-size: 13px; background-color: rgb(255, 255,
255);"><span style="font-family: arial,sans-serif; font-size:
13px; background-color: rgb(255, 255, 255);"><font
class="Apple-style-span" color="#660000">export </font></span><span
style="color: rgb(102, 0, 0); font-family: arial,sans-serif;
font-size: 13px; background-color: rgb(255, 255, 255);">OMP_NUM_THREADS=4'
(4 threads for my machine) to </span></span>my <br>
.bashrc had previously been required.<br>
<br>
Larry Pinsonneault<br>
<div><br>
</div>
<br>
<br>
On 09/21/2011 04:08 PM, Larry Pinsonneault wrote:
<blockquote cite="mid:4E7...@ha..." type="cite">
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
Hi,<br>
<br>
I get the same result as Aaron and Phil. The installation fails in
rates with <br>
exactly the same six mismatches.<br>
<br>
I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba
Satellite.A665.<br>
<br>
Larry Pinsonneault<br>
<br>
On 09/19/2011 09:05 AM, Aaron Dotter wrote:
<blockquote
cite="mid:CAN5--jM=K2F...@ma..."
type="cite">Hi,
<div><br>
</div>
<div>I'll add my tale of woe to Phil's. Everything goes fine
until rates. Looks like Phil and I are consistent, at least.</div>
<div><br>
</div>
<div>
<div>/Users/dotter/mesa3611/rates</div>
<div>building rates package.</div>
<div><br>
</div>
<div>make: `librates.a' is up to date.</div>
<div>make: `librates.a' is up to date.</div>
<div>gfortran -fopenmp -o ../tester test_rates.o -L../../make
-lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas</div>
<div>gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o -L../../make -lrates
-L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas</div>
<div><br>
</div>
<div>58c58</div>
<div>< rne20ap_to_mg24
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> rne20ap_to_mg24
1.3318310086100496E-08</div>
<div>60c60</div>
<div>< rmg24ap_to_si28
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> rmg24ap_to_si28
2.6558494648638122E-06</div>
<div>62c62</div>
<div>< r_c12_to_he4_he4_he4
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> r_c12_to_he4_he4_he4
1.4771305847143582E-26</div>
<div>63c63</div>
<div>< r_ne20_ga_o16
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> r_ne20_ga_o16
3.8122575515639085E-16</div>
<div><br>
</div>
<div>/Users/dotter/mesa3611/rates/test</div>
<div>TEST FAILED -- compare test_output to tmp.txt</div>
<div><br>
</div>
<div><br>
</div>
<div>/Users/dotter/mesa3611/rates</div>
<div>./build_and_test FAILED</div>
<div> <br>
</div>
<div>This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2.</div>
<div><br>
</div>
<div>Aaron</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<br>
<div class="gmail_quote">On Mon, Sep 19, 2011 at 8:30 AM, Phil
Arras <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:pl...@vi...">pl...@vi...</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;"><br>
Greetings,<br>
<br>
I encountered a compilation error for version 3611, for
Mac OS X (10.6.8), with gfortran 4.6.1:<br>
<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o -L../../make -lrates
-L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas<br>
<br>
58c58<br>
< rne20ap_to_mg24
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> rne20ap_to_mg24
1.3318310086100496E-08<br>
60c60<br>
< rmg24ap_to_si28
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> rmg24ap_to_si28
2.6558494648638122E-06<br>
62c62<br>
< r_c12_to_he4_he4_he4
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> r_c12_to_he4_he4_he4
1.4771305847143582E-26<br>
63c63<br>
< r_ne20_ga_o16
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> r_ne20_ga_o16
3.8122575515639085E-16<br>
<br>
/Users/arras/stars/mesa/rates/test<br>
TEST FAILED -- compare test_output to tmp.txt<br>
<br>
<br>
/Users/arras/stars/mesa/rates<br>
./build_and_test FAILED<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
<br>
<br>
<br>
Comparing the two files gave:<br>
<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff
test_output tmp.txt<br>
1c1<br>
<<br>
---<br>
><br>
5c5<br>
<<br>
---<br>
><br>
21c21<br>
< rn15pg_aux
3.0733146900102957E+02<br>
---<br>
> rn15pg_aux
3.0733146900102952E+02<br>
26c26<br>
< r_mg24_ag_si28
7.3991076437333121E-04<br>
---<br>
> r_mg24_ag_si28
7.3991076437333111E-04<br>
31c31<br>
<<br>
---<br>
><br>
33,34c33,34<br>
<<br>
<<br>
---<br>
><br>
><br>
38c38<br>
<<br>
---<br>
><br>
58c58<br>
< rne20ap_to_mg24
1.3318310086100496E-08<br>
---<br>
> rne20ap_to_mg24
0.0000000000000000E+00<br>
60c60<br>
< rmg24ap_to_si28
2.6558494648638122E-06<br>
---<br>
> rmg24ap_to_si28
0.0000000000000000E+00<br>
62,64c62,64<br>
< r_c12_to_he4_he4_he4
1.4771305847143582E-26<br>
< r_ne20_ga_o16
3.8122575515639085E-16<br>
<<br>
---<br>
> r_c12_to_he4_he4_he4
0.0000000000000000E+00<br>
> r_ne20_ga_o16
0.0000000000000000E+00<br>
><br>
66,69c66,69<br>
<<br>
< FL_epsnuc_3alf
1.1675035548327446E+21<br>
<<br>
<<br>
---<br>
><br>
> FL_epsnuc_3alf
1.1675035548327443E+21<br>
><br>
><br>
73c73<br>
<<br>
---<br>
><br>
75c75<br>
<<br>
---<br>
><br>
77c77<br>
<<br>
---<br>
><br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
<br>
So they only differ by a tiny amount.<br>
<br>
Oddly, the first time I tried the installation it barfed
on the mtx routine. Then just for the fun of it I tried
doing ./install again and it got through mtx,<br>
but then stopped on rates, and is stuck there no matter
how many times I try ./install.<br>
<br>
Help!<br>
<br>
cheers,<br>
<br>
Phil<br>
<br>
<br>
------------------------------------------------------------------------------<br>
BlackBerry&reg; DevCon Americas, Oct. 18-20, San
Francisco, CA<br>
Learn about the latest advances in developing for the<br>
BlackBerry&reg; mobile platform with sessions, labs
& more.<br>
See new tools and technologies. Register for
BlackBerry&reg; DevCon today!<br>
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_______________________________________________<br>
mesa-users mailing list<br>
<a moz-do-not-send="true"
href="mailto:mes...@li...">mes...@li...</a><br>
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href="https://lists.sourceforge.net/lists/listinfo/mesa-users"
target="_blank">https://lists.sourceforge.net/lists/listinfo/mesa-users</a><br>
</blockquote>
</div>
<br>
</div>
<pre wrap=""><fieldset class="mimeAttachmentHeader"></fieldset>
------------------------------------------------------------------------------
BlackBerry&reg; DevCon Americas, Oct. 18-20, San Francisco, CA
Learn about the latest advances in developing for the
BlackBerry&reg; mobile platform with sessions, labs & more.
See new tools and technologies. Register for BlackBerry&reg; DevCon today!
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|
|
From: Ehsan M. <mor...@ia...> - 2011-09-22 15:07:07
|
<html><div> Hi all. Thanks to Aaron, Tulgur, and Bill I did the following to get around the compilation error at "mtx" 1- for some reasons, i had to repeat setting these two environment variables. So, I just put them in my ~/.bash_profile export OMP_NUM_THREADS=3 source /opt/intel/composer_xe_2011_sp1.6.038/bin/ifortvars.sh intel64 source /opt/intel/composer_xe_2011_sp1.6.038/mkl/bin/mklvars.sh intel64 export DYLD_LIBRARY_PATH=/opt/intel/composer_xe_2011_sp1.6.038/compiler/lib 2- I checked out for the last makefile_header and neglected my old settings to have a minimal successful installation. 3- After Tulgur, I edited 'mesa/ionization/private/mod_ionization.f' and changed f(1,1:num_log_ne,i) = p% log_ne(1:num_log_ne) with (declare j as an integer in the subroutine) do j=1,num_log_ne p% f(1,j,i) = p% log_ne(j) end do 4- And finally, ./clean and ./install just worked out well. I hope this helps some friends. Ehsan. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. |
|
From: Bill P. <pa...@ki...> - 2011-09-22 14:42:14
|
Hi, I've just noticed something suggesting a multithreading issue with mesa when compiled with gfortran. It is undoubtedly a bug on my part, but I haven't tracked it down yet. It might be behind some ot the installation problems we've been having. Basically, when compiled with gfortran (but not with ifort) I can quickly cause a convergence failure in a mesa star at any time during a run simply by starting up another run simultaneously in another terminal. However, if I change to a single thread, they don't interact and don't run into trouble. I'll look into this, but in the meantime, you might try setting OMP_NUM_THREADS to 1 and see if the install goes better. -Bill |
|
From: Piotr Ś. <sr...@as...> - 2011-09-22 14:40:22
|
OK, I missed your attachment and deleted "-no-cpp-precomp" by myself from the mesa/mtx/make/makefile and it works! Mesa 3633 installed succesfully on Fedora 15 64bit with ifort 12.1.0. I also needed >export OMP_NUM_THREADS=4 Thank you, Piotrek |
|
From: Bill P. <pa...@ki...> - 2011-09-22 14:02:13
|
On Sep 22, 2011, at 4:16 AM, Piotr Śródka wrote: > cc: error: unrecognized option ‘-no-cpp-precomp’ we can at least get rid of the -no-cpp-precomp directive. please put this in mesa/mtx/make |
|
From: Peter P. <per...@gm...> - 2011-09-22 13:28:30
|
Hi, I am having the exact same error as both Phil and Aaron. I am using version 3611 and running on Mac OS X 10.6.8 and gfortran 4.6.1. Changing the number of threads fixed an error I previously had, but even with the correct number of threads installation fails at rates. -Peter On Wed, Sep 21, 2011 at 11:04 PM, Tuguldur Sukhbold < tug...@em...> wrote: > Hi Ehsan, > > this is really bizarre!!! I am running on Lion with ifort 12.1.0 on MacMini > with 2 cores. I got 3611 installed after following steps: > > 1) added following line to my .bash_profile: export > DYLD_LIBRARY_PATH="/opt/intel/composerxe/lib" > > 2) before proceeding to 'mesa/mtx/test/' setup my number of threads, in my > case with MacMini its: $ export OMP_NUM_THREADS=2 > > 3) before proceeding to 'mesa/ionization/test/' I have edited > the 'mesa/ionization/private/mod_ionization.f'. I have changed the implicit > loop: > > f(1,1:num_log_ne,i) = p% log_ne(1:num_log_ne) > > with and explicit one: > (declare j as an integer in the subroutine) > do j=1,num_log_ne > p% f(1,j,i) = p% log_ne(j) > end do > > Since I am using ifort I didn't touch the makefile_header. > > As you can see, my issue with mesa/mtx/test was solved after I declared the > number of threads. (In the mesa/mtx/test/tmp.txt it will say to you to do > that if you didn't). > > Today I have updated (actually did a fresh checkout) of 3633, which > installed with no problem at all (I didn't even had to change the loop in > mod_ionization.f). > > Tuguldur > > > > > > > > 2011/9/21 Ehsan Moravveji <mor...@ia...> > >> Thanks Tuguldur >> I had already set this variable. The problem was with OMPI library that I >> resolved. >> Still I get an error like this: >> >> ifort -vec-report0 -traceback -error-limit 6 -openmp -threads >> -I../../make -I../../public -I../../../include -check uninit -check >> pointers -check bounds -check all -g -c -free ../src/test_mtx.f >> ifort -openmp -threads -o ../tester test_pardiso.o test_klu.o >> test_mtx_support.o test_banded.o test_block_tridiagonal.o test_square.o >> test_sparse.o test_mtx.o \ >> -L../../make -lmtx -lmkl_intel_lp64 -lmkl_intel_thread >> -lmkl_lapack95_lp64 -lmkl_core -liomp5 -lpthread -lmesablas -L../../../lib >> -lutils -lalert >> Undefined symbols for architecture x86_64: >> "_c_fortran_klu_", referenced from: >> _mod_klu_mp_do_klu_decsols_ in libmtx.a(mod_klu.o) >> _mod_klu_mp_do_klu_decsols_nrhs_ in libmtx.a(mod_klu.o) >> _mod_klu_mp_do_klu_decsols_nrhs_0_based_ in libmtx.a(mod_klu.o) >> ld: symbol(s) not found for architecture x86_64 >> make: *** [tester] Error 1 >> >> /Users/ehsan/programs/mesa/mtx/test >> FAILED >> >> >> /Users/ehsan/programs/mesa/mtx >> ./build_and_test FAILED >> >> My question is this: >> With your Lion 10.7 and ifort 12.0.1 (which you said is similar to mine), >> how did you set your makefile_header? >> I have problem with MKL. >> >> Best. >> Ehsan. >> >> > Ehsan, we're on an exactly same setup, I haven't encoutered this error >> > with >> > 3611. >> > >> > >> > >> > >> > >> > 2011/9/21 Ehsan Moravveji <mor...@ia...> >> > >> >> > did you guys set the number of threads correctly? My issue in >> >> > /mesa/star/mtx/test/ was solved by setting the correct number of >> >> threads >> >> > (2 >> >> > in my case): >> >> > >> >> > $ export OMP_NUM_THREADS=2 >> >> >> >> In my case, it is already set, but I get the error from another module: >> >> >> >> ifort -vec-report0 -traceback -error-limit 6 -openmp -threads >> >> -I../../make >> >> -I../../public -I../../../include -check uninit -check pointers -check >> >> bounds -check all -g -c -fixed -132 ../src/test_const.f >> >> ifort -openmp -threads -o ../tester test_const.o -L../../make -lconst >> >> >> >> >> >> FAILED >> >> >> >> >> >> /Users/ehsan/programs/mesa/const/test >> >> >> >> TEST FAILED -- compare test_output to tmp.txt >> >> >> >> Any help? >> >> >> >> I use ifort 12.0.1 on Lion 10.7 >> >> >> >> Ehsan. >> >> >> >> >> >> > >> >> > Tuguldur >> >> > >> >> > >> >> > >> >> > >> >> > >> >> > >> >> > >> >> > 2011/9/21 Larry Pinsonneault <lpi...@ha...> >> >> > >> >> >> ** >> >> >> Hi, >> >> >> >> >> >> I get the same result as Aaron and Phil. The installation fails in >> >> rates >> >> >> with >> >> >> exactly the same six mismatches. >> >> >> >> >> >> I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba >> >> >> Satellite.A665. >> >> >> >> >> >> Larry Pinsonneault >> >> >> >> >> >> >> >> >> On 09/19/2011 09:05 AM, Aaron Dotter wrote: >> >> >> >> >> >> Hi, >> >> >> >> >> >> I'll add my tale of woe to Phil's. Everything goes fine until rates. >> >> >> Looks like Phil and I are consistent, at least. >> >> >> >> >> >> /Users/dotter/mesa3611/rates >> >> >> building rates package. >> >> >> >> >> >> make: `librates.a' is up to date. >> >> >> make: `librates.a' is up to date. >> >> >> gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates >> >> >> -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum >> >> >> -lutils >> >> >> -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o >> >> >> -L../../make >> >> >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d >> >> -linterp_1d >> >> >> -lnum >> >> >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> >> >> >> >> 58c58 >> >> >> < rne20ap_to_mg24 0.0000000000000000E+00 >> >> >> --- field 2 relative error 1.00e+00 >> >> >> > rne20ap_to_mg24 1.3318310086100496E-08 >> >> >> 60c60 >> >> >> < rmg24ap_to_si28 0.0000000000000000E+00 >> >> >> --- field 2 relative error 1.00e+00 >> >> >> > rmg24ap_to_si28 2.6558494648638122E-06 >> >> >> 62c62 >> >> >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >> >> --- field 2 relative error 1.00e+00 >> >> >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >> >> 63c63 >> >> >> < r_ne20_ga_o16 0.0000000000000000E+00 >> >> >> --- field 2 relative error 1.00e+00 >> >> >> > r_ne20_ga_o16 3.8122575515639085E-16 >> >> >> >> >> >> /Users/dotter/mesa3611/rates/test >> >> >> TEST FAILED -- compare test_output to tmp.txt >> >> >> >> >> >> >> >> >> /Users/dotter/mesa3611/rates >> >> >> ./build_and_test FAILED >> >> >> >> >> >> This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2. >> >> >> >> >> >> Aaron >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...> >> >> wrote: >> >> >> >> >> >>> >> >> >>> Greetings, >> >> >>> >> >> >>> I encountered a compilation error for version 3611, for Mac OS X >> >> >>> (10.6.8), >> >> >>> with gfortran 4.6.1: >> >> >>> >> >> >>> >> >> >>> >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >>> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o >> >> >>> -L../../make >> >> >>> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d >> >> -linterp_1d >> >> >>> -lnum >> >> >>> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> >>> >> >> >>> 58c58 >> >> >>> < rne20ap_to_mg24 0.0000000000000000E+00 >> >> >>> --- field 2 relative error 1.00e+00 >> >> >>> > rne20ap_to_mg24 1.3318310086100496E-08 >> >> >>> 60c60 >> >> >>> < rmg24ap_to_si28 0.0000000000000000E+00 >> >> >>> --- field 2 relative error 1.00e+00 >> >> >>> > rmg24ap_to_si28 2.6558494648638122E-06 >> >> >>> 62c62 >> >> >>> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >> >>> --- field 2 relative error 1.00e+00 >> >> >>> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >> >>> 63c63 >> >> >>> < r_ne20_ga_o16 0.0000000000000000E+00 >> >> >>> --- field 2 relative error 1.00e+00 >> >> >>> > r_ne20_ga_o16 3.8122575515639085E-16 >> >> >>> >> >> >>> /Users/arras/stars/mesa/rates/test >> >> >>> TEST FAILED -- compare test_output to tmp.txt >> >> >>> >> >> >>> >> >> >>> /Users/arras/stars/mesa/rates >> >> >>> ./build_and_test FAILED >> >> >>> >> >> >>> >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >>> >> >> >>> >> >> >>> >> >> >>> Comparing the two files gave: >> >> >>> >> >> >>> >> >> >>> >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >>> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output >> >> tmp.txt >> >> >>> 1c1 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 5c5 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 21c21 >> >> >>> < rn15pg_aux 3.0733146900102957E+02 >> >> >>> --- >> >> >>> > rn15pg_aux 3.0733146900102952E+02 >> >> >>> 26c26 >> >> >>> < r_mg24_ag_si28 7.3991076437333121E-04 >> >> >>> --- >> >> >>> > r_mg24_ag_si28 7.3991076437333111E-04 >> >> >>> 31c31 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 33,34c33,34 >> >> >>> < >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> > >> >> >>> 38c38 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 58c58 >> >> >>> < rne20ap_to_mg24 1.3318310086100496E-08 >> >> >>> --- >> >> >>> > rne20ap_to_mg24 0.0000000000000000E+00 >> >> >>> 60c60 >> >> >>> < rmg24ap_to_si28 2.6558494648638122E-06 >> >> >>> --- >> >> >>> > rmg24ap_to_si28 0.0000000000000000E+00 >> >> >>> 62,64c62,64 >> >> >>> < r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >> >>> < r_ne20_ga_o16 3.8122575515639085E-16 >> >> >>> < >> >> >>> --- >> >> >>> > r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >> >>> > r_ne20_ga_o16 0.0000000000000000E+00 >> >> >>> > >> >> >>> 66,69c66,69 >> >> >>> < >> >> >>> < FL_epsnuc_3alf 1.1675035548327446E+21 >> >> >>> < >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> > FL_epsnuc_3alf 1.1675035548327443E+21 >> >> >>> > >> >> >>> > >> >> >>> 73c73 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 75c75 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> 77c77 >> >> >>> < >> >> >>> --- >> >> >>> > >> >> >>> >> >> >>> >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >>> >> >> >>> So they only differ by a tiny amount. >> >> >>> >> >> >>> Oddly, the first time I tried the installation it barfed on the mtx >> >> >>> routine. Then just for the fun of it I tried doing ./install again >> >> and >> >> >>> it >> >> >>> got through mtx, >> >> >>> but then stopped on rates, and is stuck there no matter how many >> >> times >> >> >>> I >> >> >>> try ./install. >> >> >>> >> >> >>> Help! >> >> >>> >> >> >>> cheers, >> >> >>> >> >> >>> Phil >> >> >>> >> >> >>> >> >> >>> >> >> >>> >> >> >> ------------------------------------------------------------------------------ >> >> >>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> >> >>> Learn about the latest advances in developing for the >> >> >>> BlackBerry® mobile platform with sessions, labs & more. >> >> >>> See new tools and technologies. Register for BlackBerry® DevCon >> >> >>> today! >> >> >>> http://p.sf.net/sfu/rim-devcon-copy1 >> >> >>> _______________________________________________ >> >> >>> mesa-users mailing list >> >> >>> mes...@li... >> >> >>> https://lists.sourceforge.net/lists/listinfo/mesa-users >> >> >>> >> >> >> >> >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> >> >> Learn about the latest advances in developing for the >> >> >> BlackBerry® mobile platform with sessions, labs & more. >> >> >> See new tools and technologies. Register for BlackBerry® DevCon >> >> >> today!http://p.sf.net/sfu/rim-devcon-copy1 >> >> >> >> >> >> >> >> >> _______________________________________________ >> >> >> mesa-users mailing >> >> >> lis...@li...https:// >> >> lists.sourceforge.net/lists/listinfo/mesa-users >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> >> All the data continuously generated in your IT infrastructure >> >> contains a >> >> >> definitive record of customers, application performance, security >> >> >> threats, fraudulent activity and more. Splunk takes this data and >> >> makes >> >> >> sense of it. Business sense. IT sense. Common sense. >> >> >> http://p.sf.net/sfu/splunk-d2dcopy1 >> >> >> _______________________________________________ >> >> >> mesa-users mailing list >> >> >> mes...@li... >> >> >> https://lists.sourceforge.net/lists/listinfo/mesa-users >> >> >> >> >> >> >> >> > >> >> > >> >> > -- >> >> > >> ------------------------------------------------------------------------- >> >> > "No word from Landau, No thought from Liefshitz" - Landau's wife >> >> > >> >> > "Science is interesting, and if you don't agree, you can fuck off" - >> >> > Editor >> >> > of New Scientist Magazine >> >> > >> >> > Three out of two people have difficulties with fractions. >> >> > >> >> > Kenyan proverb: "Take care of the Earth. It was not given to you by >> >> your >> >> > parents; it was loaned to you by your children." >> >> > >> >> > "The Bible tells us how to go to heaven, not how the heavens go" >> >> Galileo >> >> > >> >> > -- >> >> > This message has been scanned for viruses and >> >> > dangerous content by MailScanner, and is >> >> > believed to be clean. >> >> >> >> > >> >> > >> >> >> ------------------------------------------------------------------------------ >> >> > All the data continuously generated in your IT infrastructure >> contains >> >> a >> >> > definitive record of customers, application performance, security >> >> > threats, fraudulent activity and more. Splunk takes this data and >> >> makes >> >> > sense of it. Business sense. IT sense. Common sense. >> >> > >> >> >> http://p.sf.net/sfu/splunk-d2dcopy1_______________________________________________ >> >> > mesa-users mailing list >> >> > mes...@li... >> >> > https://lists.sourceforge.net/lists/listinfo/mesa-users >> >> > >> >> -- >> >> This message has been scanned for viruses and >> >> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and >> >> >> is >> >> believed to be clean. >> > >> > >> > >> > >> > -- >> > >> ------------------------------------------------------------------------- >> > "No word from Landau, No thought from Liefshitz" - Landau's wife >> > >> > "Science is interesting, and if you don't agree, you can fuck off" - >> > Editor >> > of New Scientist Magazine >> > >> > Three out of two people have difficulties with fractions. >> > >> > Kenyan proverb: "Take care of the Earth. It was not given to you by your >> > parents; it was loaned to you by your children." >> > >> > "The Bible tells us how to go to heaven, not how the heavens go" Galileo >> > >> > -- >> > This message has been scanned for viruses and >> > dangerous content by MailScanner, and is >> > believed to be clean. >> > >> > >> -- >> This message has been scanned for viruses and >> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is >> >> believed to be clean. >> > > > > -- > ------------------------------------------------------------------------- > "No word from Landau, No thought from Liefshitz" - Landau's wife > > "Science is interesting, and if you don't agree, you can fuck off" - Editor > of New Scientist Magazine > > Three out of two people have difficulties with fractions. > > Kenyan proverb: "Take care of the Earth. It was not given to you by your > parents; it was loaned to you by your children." > > "The Bible tells us how to go to heaven, not how the heavens go" Galileo > > > > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > |
|
From: Piotr Ś. <sr...@as...> - 2011-09-22 11:41:45
|
I believe that is silly problem, but still can't compile mesa. Running Fedora 15 64bit with gfortran 4.6.0 How can I check how many threads has my processor? /home/pit/mesa/mtx building mtx package. cc -O3 -fno-common -no-cpp-precomp -fexceptions -c -I../klu_src ../klu_src/btf_order.c -o btf_order.o cc: error: unrecognized option ‘-no-cpp-precomp’ make: *** [btf_order.o] Błąd 1 /home/pit/mesa/mtx/make FAILED /home/pit/mesa/mtx ./build_and_test FAILED Help, Piotr Śródka |
|
From: Tuguldur S. <tug...@em...> - 2011-09-22 04:04:14
|
Hi Ehsan,
this is really bizarre!!! I am running on Lion with ifort 12.1.0 on MacMini
with 2 cores. I got 3611 installed after following steps:
1) added following line to my .bash_profile: export
DYLD_LIBRARY_PATH="/opt/intel/composerxe/lib"
2) before proceeding to 'mesa/mtx/test/' setup my number of threads, in my
case with MacMini its: $ export OMP_NUM_THREADS=2
3) before proceeding to 'mesa/ionization/test/' I have edited
the 'mesa/ionization/private/mod_ionization.f'. I have changed the implicit
loop:
f(1,1:num_log_ne,i) = p% log_ne(1:num_log_ne)
with and explicit one:
(declare j as an integer in the subroutine)
do j=1,num_log_ne
p% f(1,j,i) = p% log_ne(j)
end do
Since I am using ifort I didn't touch the makefile_header.
As you can see, my issue with mesa/mtx/test was solved after I declared the
number of threads. (In the mesa/mtx/test/tmp.txt it will say to you to do
that if you didn't).
Today I have updated (actually did a fresh checkout) of 3633, which
installed with no problem at all (I didn't even had to change the loop in
mod_ionization.f).
Tuguldur
2011/9/21 Ehsan Moravveji <mor...@ia...>
> Thanks Tuguldur
> I had already set this variable. The problem was with OMPI library that I
> resolved.
> Still I get an error like this:
>
> ifort -vec-report0 -traceback -error-limit 6 -openmp -threads -I../../make
> -I../../public -I../../../include -check uninit -check pointers -check
> bounds -check all -g -c -free ../src/test_mtx.f
> ifort -openmp -threads -o ../tester test_pardiso.o test_klu.o
> test_mtx_support.o test_banded.o test_block_tridiagonal.o test_square.o
> test_sparse.o test_mtx.o \
> -L../../make -lmtx -lmkl_intel_lp64 -lmkl_intel_thread
> -lmkl_lapack95_lp64 -lmkl_core -liomp5 -lpthread -lmesablas -L../../../lib
> -lutils -lalert
> Undefined symbols for architecture x86_64:
> "_c_fortran_klu_", referenced from:
> _mod_klu_mp_do_klu_decsols_ in libmtx.a(mod_klu.o)
> _mod_klu_mp_do_klu_decsols_nrhs_ in libmtx.a(mod_klu.o)
> _mod_klu_mp_do_klu_decsols_nrhs_0_based_ in libmtx.a(mod_klu.o)
> ld: symbol(s) not found for architecture x86_64
> make: *** [tester] Error 1
>
> /Users/ehsan/programs/mesa/mtx/test
> FAILED
>
>
> /Users/ehsan/programs/mesa/mtx
> ./build_and_test FAILED
>
> My question is this:
> With your Lion 10.7 and ifort 12.0.1 (which you said is similar to mine),
> how did you set your makefile_header?
> I have problem with MKL.
>
> Best.
> Ehsan.
>
> > Ehsan, we're on an exactly same setup, I haven't encoutered this error
> > with
> > 3611.
> >
> >
> >
> >
> >
> > 2011/9/21 Ehsan Moravveji <mor...@ia...>
> >
> >> > did you guys set the number of threads correctly? My issue in
> >> > /mesa/star/mtx/test/ was solved by setting the correct number of
> >> threads
> >> > (2
> >> > in my case):
> >> >
> >> > $ export OMP_NUM_THREADS=2
> >>
> >> In my case, it is already set, but I get the error from another module:
> >>
> >> ifort -vec-report0 -traceback -error-limit 6 -openmp -threads
> >> -I../../make
> >> -I../../public -I../../../include -check uninit -check pointers -check
> >> bounds -check all -g -c -fixed -132 ../src/test_const.f
> >> ifort -openmp -threads -o ../tester test_const.o -L../../make -lconst
> >>
> >>
> >> FAILED
> >>
> >>
> >> /Users/ehsan/programs/mesa/const/test
> >>
> >> TEST FAILED -- compare test_output to tmp.txt
> >>
> >> Any help?
> >>
> >> I use ifort 12.0.1 on Lion 10.7
> >>
> >> Ehsan.
> >>
> >>
> >> >
> >> > Tuguldur
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> > 2011/9/21 Larry Pinsonneault <lpi...@ha...>
> >> >
> >> >> **
> >> >> Hi,
> >> >>
> >> >> I get the same result as Aaron and Phil. The installation fails in
> >> rates
> >> >> with
> >> >> exactly the same six mismatches.
> >> >>
> >> >> I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba
> >> >> Satellite.A665.
> >> >>
> >> >> Larry Pinsonneault
> >> >>
> >> >>
> >> >> On 09/19/2011 09:05 AM, Aaron Dotter wrote:
> >> >>
> >> >> Hi,
> >> >>
> >> >> I'll add my tale of woe to Phil's. Everything goes fine until rates.
> >> >> Looks like Phil and I are consistent, at least.
> >> >>
> >> >> /Users/dotter/mesa3611/rates
> >> >> building rates package.
> >> >>
> >> >> make: `librates.a' is up to date.
> >> >> make: `librates.a' is up to date.
> >> >> gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates
> >> >> -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum
> >> >> -lutils
> >> >> -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas
> >> >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o
> >> >> -L../../make
> >> >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d
> >> -linterp_1d
> >> >> -lnum
> >> >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas
> >> >>
> >> >> 58c58
> >> >> < rne20ap_to_mg24 0.0000000000000000E+00
> >> >> --- field 2 relative error 1.00e+00
> >> >> > rne20ap_to_mg24 1.3318310086100496E-08
> >> >> 60c60
> >> >> < rmg24ap_to_si28 0.0000000000000000E+00
> >> >> --- field 2 relative error 1.00e+00
> >> >> > rmg24ap_to_si28 2.6558494648638122E-06
> >> >> 62c62
> >> >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00
> >> >> --- field 2 relative error 1.00e+00
> >> >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26
> >> >> 63c63
> >> >> < r_ne20_ga_o16 0.0000000000000000E+00
> >> >> --- field 2 relative error 1.00e+00
> >> >> > r_ne20_ga_o16 3.8122575515639085E-16
> >> >>
> >> >> /Users/dotter/mesa3611/rates/test
> >> >> TEST FAILED -- compare test_output to tmp.txt
> >> >>
> >> >>
> >> >> /Users/dotter/mesa3611/rates
> >> >> ./build_and_test FAILED
> >> >>
> >> >> This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2.
> >> >>
> >> >> Aaron
> >> >>
> >> >>
> >> >>
> >> >>
> >> >> On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...>
> >> wrote:
> >> >>
> >> >>>
> >> >>> Greetings,
> >> >>>
> >> >>> I encountered a compilation error for version 3611, for Mac OS X
> >> >>> (10.6.8),
> >> >>> with gfortran 4.6.1:
> >> >>>
> >> >>>
> >> >>>
> >>
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >> >>> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o
> >> >>> -L../../make
> >> >>> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d
> >> -linterp_1d
> >> >>> -lnum
> >> >>> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas
> >> >>>
> >> >>> 58c58
> >> >>> < rne20ap_to_mg24 0.0000000000000000E+00
> >> >>> --- field 2 relative error 1.00e+00
> >> >>> > rne20ap_to_mg24 1.3318310086100496E-08
> >> >>> 60c60
> >> >>> < rmg24ap_to_si28 0.0000000000000000E+00
> >> >>> --- field 2 relative error 1.00e+00
> >> >>> > rmg24ap_to_si28 2.6558494648638122E-06
> >> >>> 62c62
> >> >>> < r_c12_to_he4_he4_he4 0.0000000000000000E+00
> >> >>> --- field 2 relative error 1.00e+00
> >> >>> > r_c12_to_he4_he4_he4 1.4771305847143582E-26
> >> >>> 63c63
> >> >>> < r_ne20_ga_o16 0.0000000000000000E+00
> >> >>> --- field 2 relative error 1.00e+00
> >> >>> > r_ne20_ga_o16 3.8122575515639085E-16
> >> >>>
> >> >>> /Users/arras/stars/mesa/rates/test
> >> >>> TEST FAILED -- compare test_output to tmp.txt
> >> >>>
> >> >>>
> >> >>> /Users/arras/stars/mesa/rates
> >> >>> ./build_and_test FAILED
> >> >>>
> >> >>>
> >>
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >> >>>
> >> >>>
> >> >>>
> >> >>> Comparing the two files gave:
> >> >>>
> >> >>>
> >> >>>
> >>
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >> >>> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output
> >> tmp.txt
> >> >>> 1c1
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 5c5
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 21c21
> >> >>> < rn15pg_aux 3.0733146900102957E+02
> >> >>> ---
> >> >>> > rn15pg_aux 3.0733146900102952E+02
> >> >>> 26c26
> >> >>> < r_mg24_ag_si28 7.3991076437333121E-04
> >> >>> ---
> >> >>> > r_mg24_ag_si28 7.3991076437333111E-04
> >> >>> 31c31
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 33,34c33,34
> >> >>> <
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> >
> >> >>> 38c38
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 58c58
> >> >>> < rne20ap_to_mg24 1.3318310086100496E-08
> >> >>> ---
> >> >>> > rne20ap_to_mg24 0.0000000000000000E+00
> >> >>> 60c60
> >> >>> < rmg24ap_to_si28 2.6558494648638122E-06
> >> >>> ---
> >> >>> > rmg24ap_to_si28 0.0000000000000000E+00
> >> >>> 62,64c62,64
> >> >>> < r_c12_to_he4_he4_he4 1.4771305847143582E-26
> >> >>> < r_ne20_ga_o16 3.8122575515639085E-16
> >> >>> <
> >> >>> ---
> >> >>> > r_c12_to_he4_he4_he4 0.0000000000000000E+00
> >> >>> > r_ne20_ga_o16 0.0000000000000000E+00
> >> >>> >
> >> >>> 66,69c66,69
> >> >>> <
> >> >>> < FL_epsnuc_3alf 1.1675035548327446E+21
> >> >>> <
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> > FL_epsnuc_3alf 1.1675035548327443E+21
> >> >>> >
> >> >>> >
> >> >>> 73c73
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 75c75
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>> 77c77
> >> >>> <
> >> >>> ---
> >> >>> >
> >> >>>
> >> >>>
> >>
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> >> >>>
> >> >>> So they only differ by a tiny amount.
> >> >>>
> >> >>> Oddly, the first time I tried the installation it barfed on the mtx
> >> >>> routine. Then just for the fun of it I tried doing ./install again
> >> and
> >> >>> it
> >> >>> got through mtx,
> >> >>> but then stopped on rates, and is stuck there no matter how many
> >> times
> >> >>> I
> >> >>> try ./install.
> >> >>>
> >> >>> Help!
> >> >>>
> >> >>> cheers,
> >> >>>
> >> >>> Phil
> >> >>>
> >> >>>
> >> >>>
> >> >>>
> >>
> ------------------------------------------------------------------------------
> >> >>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
> >> >>> Learn about the latest advances in developing for the
> >> >>> BlackBerry® mobile platform with sessions, labs & more.
> >> >>> See new tools and technologies. Register for BlackBerry® DevCon
> >> >>> today!
> >> >>> http://p.sf.net/sfu/rim-devcon-copy1
> >> >>> _______________________________________________
> >> >>> mesa-users mailing list
> >> >>> mes...@li...
> >> >>> https://lists.sourceforge.net/lists/listinfo/mesa-users
> >> >>>
> >> >>
> >> >>
> >> >>
> >>
> ------------------------------------------------------------------------------
> >> >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
> >> >> Learn about the latest advances in developing for the
> >> >> BlackBerry® mobile platform with sessions, labs & more.
> >> >> See new tools and technologies. Register for BlackBerry® DevCon
> >> >> today!http://p.sf.net/sfu/rim-devcon-copy1
> >> >>
> >> >>
> >> >> _______________________________________________
> >> >> mesa-users mailing
> >> >> lis...@li...https://
> >> lists.sourceforge.net/lists/listinfo/mesa-users
> >>
> >> >>
> >> >>
> >> >>
> >> >>
> >>
> ------------------------------------------------------------------------------
> >> >> All the data continuously generated in your IT infrastructure
> >> contains a
> >> >> definitive record of customers, application performance, security
> >> >> threats, fraudulent activity and more. Splunk takes this data and
> >> makes
> >> >> sense of it. Business sense. IT sense. Common sense.
> >> >> http://p.sf.net/sfu/splunk-d2dcopy1
> >> >> _______________________________________________
> >> >> mesa-users mailing list
> >> >> mes...@li...
> >> >> https://lists.sourceforge.net/lists/listinfo/mesa-users
> >> >>
> >> >>
> >> >
> >> >
> >> > --
> >> >
> -------------------------------------------------------------------------
> >> > "No word from Landau, No thought from Liefshitz" - Landau's wife
> >> >
> >> > "Science is interesting, and if you don't agree, you can fuck off" -
> >> > Editor
> >> > of New Scientist Magazine
> >> >
> >> > Three out of two people have difficulties with fractions.
> >> >
> >> > Kenyan proverb: "Take care of the Earth. It was not given to you by
> >> your
> >> > parents; it was loaned to you by your children."
> >> >
> >> > "The Bible tells us how to go to heaven, not how the heavens go"
> >> Galileo
> >> >
> >> > --
> >> > This message has been scanned for viruses and
> >> > dangerous content by MailScanner, and is
> >> > believed to be clean.
> >>
> >> >
> >> >
> >>
> ------------------------------------------------------------------------------
> >> > All the data continuously generated in your IT infrastructure contains
> >> a
> >> > definitive record of customers, application performance, security
> >> > threats, fraudulent activity and more. Splunk takes this data and
> >> makes
> >> > sense of it. Business sense. IT sense. Common sense.
> >> >
> >>
> http://p.sf.net/sfu/splunk-d2dcopy1_______________________________________________
> >> > mesa-users mailing list
> >> > mes...@li...
> >> > https://lists.sourceforge.net/lists/listinfo/mesa-users
> >> >
> >> --
> >> This message has been scanned for viruses and
> >> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and
>
> >> is
> >> believed to be clean.
> >
> >
> >
> >
> > --
> > -------------------------------------------------------------------------
> > "No word from Landau, No thought from Liefshitz" - Landau's wife
> >
> > "Science is interesting, and if you don't agree, you can fuck off" -
> > Editor
> > of New Scientist Magazine
> >
> > Three out of two people have difficulties with fractions.
> >
> > Kenyan proverb: "Take care of the Earth. It was not given to you by your
> > parents; it was loaned to you by your children."
> >
> > "The Bible tells us how to go to heaven, not how the heavens go" Galileo
> >
> > --
> > This message has been scanned for viruses and
> > dangerous content by MailScanner, and is
> > believed to be clean.
> >
> >
> --
> This message has been scanned for viruses and
> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is
> believed to be clean.
>
--
-------------------------------------------------------------------------
"No word from Landau, No thought from Liefshitz" - Landau's wife
"Science is interesting, and if you don't agree, you can fuck off" - Editor
of New Scientist Magazine
Three out of two people have difficulties with fractions.
Kenyan proverb: "Take care of the Earth. It was not given to you by your
parents; it was loaned to you by your children."
"The Bible tells us how to go to heaven, not how the heavens go" Galileo
|
|
From: Tuguldur S. <tug...@em...> - 2011-09-22 00:04:21
|
Ehsan and others, try installing 3633 I had no issues at all on my machine. 2011/9/21 Tuguldur Sukhbold <tug...@em...> > Ehsan, we're on an exactly same setup, I haven't encoutered this error with > 3611. > > > > > > 2011/9/21 Ehsan Moravveji <mor...@ia...> > >> > did you guys set the number of threads correctly? My issue in >> > /mesa/star/mtx/test/ was solved by setting the correct number of threads >> > (2 >> > in my case): >> > >> > $ export OMP_NUM_THREADS=2 >> >> In my case, it is already set, but I get the error from another module: >> >> ifort -vec-report0 -traceback -error-limit 6 -openmp -threads >> -I../../make -I../../public -I../../../include -check uninit -check >> pointers -check bounds -check all -g -c -fixed -132 ../src/test_const.f >> ifort -openmp -threads -o ../tester test_const.o -L../../make -lconst >> >> >> FAILED >> >> >> /Users/ehsan/programs/mesa/const/test >> >> TEST FAILED -- compare test_output to tmp.txt >> >> Any help? >> >> I use ifort 12.0.1 on Lion 10.7 >> >> Ehsan. >> >> >> > >> > Tuguldur >> > >> > >> > >> > >> > >> > >> > >> > 2011/9/21 Larry Pinsonneault <lpi...@ha...> >> > >> >> ** >> >> Hi, >> >> >> >> I get the same result as Aaron and Phil. The installation fails in >> rates >> >> with >> >> exactly the same six mismatches. >> >> >> >> I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba >> >> Satellite.A665. >> >> >> >> Larry Pinsonneault >> >> >> >> >> >> On 09/19/2011 09:05 AM, Aaron Dotter wrote: >> >> >> >> Hi, >> >> >> >> I'll add my tale of woe to Phil's. Everything goes fine until rates. >> >> Looks like Phil and I are consistent, at least. >> >> >> >> /Users/dotter/mesa3611/rates >> >> building rates package. >> >> >> >> make: `librates.a' is up to date. >> >> make: `librates.a' is up to date. >> >> gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates >> >> -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum >> >> -lutils >> >> -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o >> >> -L../../make >> >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d >> >> -lnum >> >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> >> >> 58c58 >> >> < rne20ap_to_mg24 0.0000000000000000E+00 >> >> --- field 2 relative error 1.00e+00 >> >> > rne20ap_to_mg24 1.3318310086100496E-08 >> >> 60c60 >> >> < rmg24ap_to_si28 0.0000000000000000E+00 >> >> --- field 2 relative error 1.00e+00 >> >> > rmg24ap_to_si28 2.6558494648638122E-06 >> >> 62c62 >> >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >> --- field 2 relative error 1.00e+00 >> >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >> 63c63 >> >> < r_ne20_ga_o16 0.0000000000000000E+00 >> >> --- field 2 relative error 1.00e+00 >> >> > r_ne20_ga_o16 3.8122575515639085E-16 >> >> >> >> /Users/dotter/mesa3611/rates/test >> >> TEST FAILED -- compare test_output to tmp.txt >> >> >> >> >> >> /Users/dotter/mesa3611/rates >> >> ./build_and_test FAILED >> >> >> >> This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2. >> >> >> >> Aaron >> >> >> >> >> >> >> >> >> >> On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...> >> wrote: >> >> >> >>> >> >>> Greetings, >> >>> >> >>> I encountered a compilation error for version 3611, for Mac OS X >> >>> (10.6.8), >> >>> with gfortran 4.6.1: >> >>> >> >>> >> >>> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >>> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o >> >>> -L../../make >> >>> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d >> >>> -lnum >> >>> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >>> >> >>> 58c58 >> >>> < rne20ap_to_mg24 0.0000000000000000E+00 >> >>> --- field 2 relative error 1.00e+00 >> >>> > rne20ap_to_mg24 1.3318310086100496E-08 >> >>> 60c60 >> >>> < rmg24ap_to_si28 0.0000000000000000E+00 >> >>> --- field 2 relative error 1.00e+00 >> >>> > rmg24ap_to_si28 2.6558494648638122E-06 >> >>> 62c62 >> >>> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >>> --- field 2 relative error 1.00e+00 >> >>> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >>> 63c63 >> >>> < r_ne20_ga_o16 0.0000000000000000E+00 >> >>> --- field 2 relative error 1.00e+00 >> >>> > r_ne20_ga_o16 3.8122575515639085E-16 >> >>> >> >>> /Users/arras/stars/mesa/rates/test >> >>> TEST FAILED -- compare test_output to tmp.txt >> >>> >> >>> >> >>> /Users/arras/stars/mesa/rates >> >>> ./build_and_test FAILED >> >>> >> >>> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >>> >> >>> >> >>> >> >>> Comparing the two files gave: >> >>> >> >>> >> >>> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >>> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output >> tmp.txt >> >>> 1c1 >> >>> < >> >>> --- >> >>> > >> >>> 5c5 >> >>> < >> >>> --- >> >>> > >> >>> 21c21 >> >>> < rn15pg_aux 3.0733146900102957E+02 >> >>> --- >> >>> > rn15pg_aux 3.0733146900102952E+02 >> >>> 26c26 >> >>> < r_mg24_ag_si28 7.3991076437333121E-04 >> >>> --- >> >>> > r_mg24_ag_si28 7.3991076437333111E-04 >> >>> 31c31 >> >>> < >> >>> --- >> >>> > >> >>> 33,34c33,34 >> >>> < >> >>> < >> >>> --- >> >>> > >> >>> > >> >>> 38c38 >> >>> < >> >>> --- >> >>> > >> >>> 58c58 >> >>> < rne20ap_to_mg24 1.3318310086100496E-08 >> >>> --- >> >>> > rne20ap_to_mg24 0.0000000000000000E+00 >> >>> 60c60 >> >>> < rmg24ap_to_si28 2.6558494648638122E-06 >> >>> --- >> >>> > rmg24ap_to_si28 0.0000000000000000E+00 >> >>> 62,64c62,64 >> >>> < r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> >>> < r_ne20_ga_o16 3.8122575515639085E-16 >> >>> < >> >>> --- >> >>> > r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> >>> > r_ne20_ga_o16 0.0000000000000000E+00 >> >>> > >> >>> 66,69c66,69 >> >>> < >> >>> < FL_epsnuc_3alf 1.1675035548327446E+21 >> >>> < >> >>> < >> >>> --- >> >>> > >> >>> > FL_epsnuc_3alf 1.1675035548327443E+21 >> >>> > >> >>> > >> >>> 73c73 >> >>> < >> >>> --- >> >>> > >> >>> 75c75 >> >>> < >> >>> --- >> >>> > >> >>> 77c77 >> >>> < >> >>> --- >> >>> > >> >>> >> >>> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >>> >> >>> So they only differ by a tiny amount. >> >>> >> >>> Oddly, the first time I tried the installation it barfed on the mtx >> >>> routine. Then just for the fun of it I tried doing ./install again and >> >>> it >> >>> got through mtx, >> >>> but then stopped on rates, and is stuck there no matter how many times >> >>> I >> >>> try ./install. >> >>> >> >>> Help! >> >>> >> >>> cheers, >> >>> >> >>> Phil >> >>> >> >>> >> >>> >> >>> >> ------------------------------------------------------------------------------ >> >>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> >>> Learn about the latest advances in developing for the >> >>> BlackBerry® mobile platform with sessions, labs & more. >> >>> See new tools and technologies. Register for BlackBerry® DevCon >> >>> today! >> >>> http://p.sf.net/sfu/rim-devcon-copy1 >> >>> _______________________________________________ >> >>> mesa-users mailing list >> >>> mes...@li... >> >>> https://lists.sourceforge.net/lists/listinfo/mesa-users >> >>> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> >> Learn about the latest advances in developing for the >> >> BlackBerry® mobile platform with sessions, labs & more. >> >> See new tools and technologies. Register for BlackBerry® DevCon >> >> today!http://p.sf.net/sfu/rim-devcon-copy1 >> >> >> >> >> >> _______________________________________________ >> >> mesa-users mailing >> >> lis...@li...https:// >> lists.sourceforge.net/lists/listinfo/mesa-users >> >> >> >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> All the data continuously generated in your IT infrastructure contains >> a >> >> definitive record of customers, application performance, security >> >> threats, fraudulent activity and more. Splunk takes this data and makes >> >> sense of it. Business sense. IT sense. Common sense. >> >> http://p.sf.net/sfu/splunk-d2dcopy1 >> >> _______________________________________________ >> >> mesa-users mailing list >> >> mes...@li... >> >> https://lists.sourceforge.net/lists/listinfo/mesa-users >> >> >> >> >> > >> > >> > -- >> > >> ------------------------------------------------------------------------- >> > "No word from Landau, No thought from Liefshitz" - Landau's wife >> > >> > "Science is interesting, and if you don't agree, you can fuck off" - >> > Editor >> > of New Scientist Magazine >> > >> > Three out of two people have difficulties with fractions. >> > >> > Kenyan proverb: "Take care of the Earth. It was not given to you by your >> > parents; it was loaned to you by your children." >> > >> > "The Bible tells us how to go to heaven, not how the heavens go" Galileo >> > >> > -- >> > This message has been scanned for viruses and >> > dangerous content by MailScanner, and is >> > believed to be clean. >> >> > >> > >> ------------------------------------------------------------------------------ >> > All the data continuously generated in your IT infrastructure contains a >> > definitive record of customers, application performance, security >> > threats, fraudulent activity and more. Splunk takes this data and makes >> > sense of it. Business sense. IT sense. Common sense. >> > >> http://p.sf.net/sfu/splunk-d2dcopy1_______________________________________________ >> > mesa-users mailing list >> > mes...@li... >> > https://lists.sourceforge.net/lists/listinfo/mesa-users >> > >> -- >> This message has been scanned for viruses and >> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is >> >> believed to be clean. > > > > > -- > ------------------------------------------------------------------------- > "No word from Landau, No thought from Liefshitz" - Landau's wife > > "Science is interesting, and if you don't agree, you can fuck off" - Editor > of New Scientist Magazine > > Three out of two people have difficulties with fractions. > > Kenyan proverb: "Take care of the Earth. It was not given to you by your > parents; it was loaned to you by your children." > > "The Bible tells us how to go to heaven, not how the heavens go" Galileo > > > > -- ------------------------------------------------------------------------- "No word from Landau, No thought from Liefshitz" - Landau's wife "Science is interesting, and if you don't agree, you can fuck off" - Editor of New Scientist Magazine Three out of two people have difficulties with fractions. Kenyan proverb: "Take care of the Earth. It was not given to you by your parents; it was loaned to you by your children." "The Bible tells us how to go to heaven, not how the heavens go" Galileo |
|
From: Tuguldur S. <tug...@em...> - 2011-09-21 23:55:21
|
Ehsan, we're on an exactly same setup, I haven't encoutered this error with 3611. 2011/9/21 Ehsan Moravveji <mor...@ia...> > > did you guys set the number of threads correctly? My issue in > > /mesa/star/mtx/test/ was solved by setting the correct number of threads > > (2 > > in my case): > > > > $ export OMP_NUM_THREADS=2 > > In my case, it is already set, but I get the error from another module: > > ifort -vec-report0 -traceback -error-limit 6 -openmp -threads -I../../make > -I../../public -I../../../include -check uninit -check pointers -check > bounds -check all -g -c -fixed -132 ../src/test_const.f > ifort -openmp -threads -o ../tester test_const.o -L../../make -lconst > > > FAILED > > > /Users/ehsan/programs/mesa/const/test > > TEST FAILED -- compare test_output to tmp.txt > > Any help? > > I use ifort 12.0.1 on Lion 10.7 > > Ehsan. > > > > > > Tuguldur > > > > > > > > > > > > > > > > 2011/9/21 Larry Pinsonneault <lpi...@ha...> > > > >> ** > >> Hi, > >> > >> I get the same result as Aaron and Phil. The installation fails in rates > >> with > >> exactly the same six mismatches. > >> > >> I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba > >> Satellite.A665. > >> > >> Larry Pinsonneault > >> > >> > >> On 09/19/2011 09:05 AM, Aaron Dotter wrote: > >> > >> Hi, > >> > >> I'll add my tale of woe to Phil's. Everything goes fine until rates. > >> Looks like Phil and I are consistent, at least. > >> > >> /Users/dotter/mesa3611/rates > >> building rates package. > >> > >> make: `librates.a' is up to date. > >> make: `librates.a' is up to date. > >> gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates > >> -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum > >> -lutils > >> -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o > >> -L../../make > >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d > >> -lnum > >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > >> > >> 58c58 > >> < rne20ap_to_mg24 0.0000000000000000E+00 > >> --- field 2 relative error 1.00e+00 > >> > rne20ap_to_mg24 1.3318310086100496E-08 > >> 60c60 > >> < rmg24ap_to_si28 0.0000000000000000E+00 > >> --- field 2 relative error 1.00e+00 > >> > rmg24ap_to_si28 2.6558494648638122E-06 > >> 62c62 > >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 > >> --- field 2 relative error 1.00e+00 > >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 > >> 63c63 > >> < r_ne20_ga_o16 0.0000000000000000E+00 > >> --- field 2 relative error 1.00e+00 > >> > r_ne20_ga_o16 3.8122575515639085E-16 > >> > >> /Users/dotter/mesa3611/rates/test > >> TEST FAILED -- compare test_output to tmp.txt > >> > >> > >> /Users/dotter/mesa3611/rates > >> ./build_and_test FAILED > >> > >> This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2. > >> > >> Aaron > >> > >> > >> > >> > >> On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...> wrote: > >> > >>> > >>> Greetings, > >>> > >>> I encountered a compilation error for version 3611, for Mac OS X > >>> (10.6.8), > >>> with gfortran 4.6.1: > >>> > >>> > >>> > -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > >>> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o > >>> -L../../make > >>> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d > >>> -lnum > >>> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > >>> > >>> 58c58 > >>> < rne20ap_to_mg24 0.0000000000000000E+00 > >>> --- field 2 relative error 1.00e+00 > >>> > rne20ap_to_mg24 1.3318310086100496E-08 > >>> 60c60 > >>> < rmg24ap_to_si28 0.0000000000000000E+00 > >>> --- field 2 relative error 1.00e+00 > >>> > rmg24ap_to_si28 2.6558494648638122E-06 > >>> 62c62 > >>> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 > >>> --- field 2 relative error 1.00e+00 > >>> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 > >>> 63c63 > >>> < r_ne20_ga_o16 0.0000000000000000E+00 > >>> --- field 2 relative error 1.00e+00 > >>> > r_ne20_ga_o16 3.8122575515639085E-16 > >>> > >>> /Users/arras/stars/mesa/rates/test > >>> TEST FAILED -- compare test_output to tmp.txt > >>> > >>> > >>> /Users/arras/stars/mesa/rates > >>> ./build_and_test FAILED > >>> > >>> > -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > >>> > >>> > >>> > >>> Comparing the two files gave: > >>> > >>> > >>> > -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > >>> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output tmp.txt > >>> 1c1 > >>> < > >>> --- > >>> > > >>> 5c5 > >>> < > >>> --- > >>> > > >>> 21c21 > >>> < rn15pg_aux 3.0733146900102957E+02 > >>> --- > >>> > rn15pg_aux 3.0733146900102952E+02 > >>> 26c26 > >>> < r_mg24_ag_si28 7.3991076437333121E-04 > >>> --- > >>> > r_mg24_ag_si28 7.3991076437333111E-04 > >>> 31c31 > >>> < > >>> --- > >>> > > >>> 33,34c33,34 > >>> < > >>> < > >>> --- > >>> > > >>> > > >>> 38c38 > >>> < > >>> --- > >>> > > >>> 58c58 > >>> < rne20ap_to_mg24 1.3318310086100496E-08 > >>> --- > >>> > rne20ap_to_mg24 0.0000000000000000E+00 > >>> 60c60 > >>> < rmg24ap_to_si28 2.6558494648638122E-06 > >>> --- > >>> > rmg24ap_to_si28 0.0000000000000000E+00 > >>> 62,64c62,64 > >>> < r_c12_to_he4_he4_he4 1.4771305847143582E-26 > >>> < r_ne20_ga_o16 3.8122575515639085E-16 > >>> < > >>> --- > >>> > r_c12_to_he4_he4_he4 0.0000000000000000E+00 > >>> > r_ne20_ga_o16 0.0000000000000000E+00 > >>> > > >>> 66,69c66,69 > >>> < > >>> < FL_epsnuc_3alf 1.1675035548327446E+21 > >>> < > >>> < > >>> --- > >>> > > >>> > FL_epsnuc_3alf 1.1675035548327443E+21 > >>> > > >>> > > >>> 73c73 > >>> < > >>> --- > >>> > > >>> 75c75 > >>> < > >>> --- > >>> > > >>> 77c77 > >>> < > >>> --- > >>> > > >>> > >>> > -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > >>> > >>> So they only differ by a tiny amount. > >>> > >>> Oddly, the first time I tried the installation it barfed on the mtx > >>> routine. Then just for the fun of it I tried doing ./install again and > >>> it > >>> got through mtx, > >>> but then stopped on rates, and is stuck there no matter how many times > >>> I > >>> try ./install. > >>> > >>> Help! > >>> > >>> cheers, > >>> > >>> Phil > >>> > >>> > >>> > >>> > ------------------------------------------------------------------------------ > >>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > >>> Learn about the latest advances in developing for the > >>> BlackBerry® mobile platform with sessions, labs & more. > >>> See new tools and technologies. Register for BlackBerry® DevCon > >>> today! > >>> http://p.sf.net/sfu/rim-devcon-copy1 > >>> _______________________________________________ > >>> mesa-users mailing list > >>> mes...@li... > >>> https://lists.sourceforge.net/lists/listinfo/mesa-users > >>> > >> > >> > >> > ------------------------------------------------------------------------------ > >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > >> Learn about the latest advances in developing for the > >> BlackBerry® mobile platform with sessions, labs & more. > >> See new tools and technologies. Register for BlackBerry® DevCon > >> today!http://p.sf.net/sfu/rim-devcon-copy1 > >> > >> > >> _______________________________________________ > >> mesa-users mailing > >> lis...@li...https:// > lists.sourceforge.net/lists/listinfo/mesa-users > > >> > >> > >> > >> > ------------------------------------------------------------------------------ > >> All the data continuously generated in your IT infrastructure contains a > >> definitive record of customers, application performance, security > >> threats, fraudulent activity and more. Splunk takes this data and makes > >> sense of it. Business sense. IT sense. Common sense. > >> http://p.sf.net/sfu/splunk-d2dcopy1 > >> _______________________________________________ > >> mesa-users mailing list > >> mes...@li... > >> https://lists.sourceforge.net/lists/listinfo/mesa-users > >> > >> > > > > > > -- > > ------------------------------------------------------------------------- > > "No word from Landau, No thought from Liefshitz" - Landau's wife > > > > "Science is interesting, and if you don't agree, you can fuck off" - > > Editor > > of New Scientist Magazine > > > > Three out of two people have difficulties with fractions. > > > > Kenyan proverb: "Take care of the Earth. It was not given to you by your > > parents; it was loaned to you by your children." > > > > "The Bible tells us how to go to heaven, not how the heavens go" Galileo > > > > -- > > This message has been scanned for viruses and > > dangerous content by MailScanner, and is > > believed to be clean. > > > > > > ------------------------------------------------------------------------------ > > All the data continuously generated in your IT infrastructure contains a > > definitive record of customers, application performance, security > > threats, fraudulent activity and more. Splunk takes this data and makes > > sense of it. Business sense. IT sense. Common sense. > > > http://p.sf.net/sfu/splunk-d2dcopy1_______________________________________________ > > mesa-users mailing list > > mes...@li... > > https://lists.sourceforge.net/lists/listinfo/mesa-users > > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is > believed to be clean. -- ------------------------------------------------------------------------- "No word from Landau, No thought from Liefshitz" - Landau's wife "Science is interesting, and if you don't agree, you can fuck off" - Editor of New Scientist Magazine Three out of two people have difficulties with fractions. Kenyan proverb: "Take care of the Earth. It was not given to you by your parents; it was loaned to you by your children." "The Bible tells us how to go to heaven, not how the heavens go" Galileo |
|
From: Ehsan M. <mor...@ia...> - 2011-09-21 23:49:47
|
<html><div>
> did you guys set the number of threads correctly? My issue in
> /mesa/star/mtx/test/ was solved by setting the correct number of
threads
> (2
> in my case):
>
> $ export
OMP_NUM_THREADS=2
In my case, it is already set, but I get the
error from another module:
ifort -vec-report0 -traceback
-error-limit 6 -openmp -threads -I../../make -I../../public
-I../../../include -check uninit -check pointers -check bounds
-check all -g -c -fixed -132 ../src/test_const.f
ifort -openmp
-threads -o ../tester test_const.o -L../../make -lconst
FAILED
/Users/ehsan/programs/mesa/const/test
TEST
FAILED -- compare test_output to tmp.txt
Any help?
I
use ifort 12.0.1 on Lion 10.7
Ehsan.
>
>
Tuguldur
>
>
>
>
>
>
>
> 2011/9/21 Larry Pinsonneault
<lpi...@ha...>
>
>> **
>>
Hi,
>>
>> I get the same result as Aaron and Phil.
The installation fails in rates
>> with
>> exactly
the same six mismatches.
>>
>> I am running Ubuntu
11.4 with gfortran 4.5.2 on a Toshiba
>> Satellite.A665.
>>
>> Larry Pinsonneault
>>
>>
>> On 09/19/2011 09:05 AM, Aaron Dotter wrote:
>>
>> Hi,
>>
>> I'll add my tale of woe to
Phil's. Everything goes fine until rates.
>> Looks like Phil
and I are consistent, at least.
>>
>>
/Users/dotter/mesa3611/rates
>> building rates package.
>>
>> make: `librates.a' is up to date.
>>
make: `librates.a' is up to date.
>> gfortran -fopenmp -o
../tester test_rates.o -L../../make -lrates
>> -L../../../lib
-lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum
>>
-lutils
>> -lalert -lconst -lmtx -lmesaklu -lmesalapack
-lmesablas
>> gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o
>> -L../../make
>>
-lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d
>> -lnum
>> -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas
>>
>> 58c58
>>
< rne20ap_to_mg24 0.0000000000000000E+00
>> --- field 2 relative error 1.00e+00
>> >
rne20ap_to_mg24 1.3318310086100496E-08
>> 60c60
>> <
rmg24ap_to_si28 0.0000000000000000E+00
>> --- field 2
relative error 1.00e+00
>> >
rmg24ap_to_si28 2.6558494648638122E-06
>> 62c62
>> < r_c12_to_he4_he4_he4
0.0000000000000000E+00
>> --- field 2 relative error
1.00e+00
>> > r_c12_to_he4_he4_he4
1.4771305847143582E-26
>> 63c63
>> <
r_ne20_ga_o16 0.0000000000000000E+00
>> ---
field 2 relative error 1.00e+00
>> >
r_ne20_ga_o16 3.8122575515639085E-16
>>
>>
/Users/dotter/mesa3611/rates/test
>> TEST FAILED -- compare
test_output to tmp.txt
>>
>>
>>
/Users/dotter/mesa3611/rates
>> ./build_and_test FAILED
>>
>> This is MESA 3611 on Mac OS X 10.6.8 with
gfortran 4.5.2.
>>
>> Aaron
>>
>>
>>
>>
>> On Mon, Sep 19, 2011
at 8:30 AM, Phil Arras <pl...@vi...> wrote:
>>
>>>
>>> Greetings,
>>>
>>> I encountered a compilation error for version 3611, for Mac
OS X
>>> (10.6.8),
>>> with gfortran 4.6.1:
>>>
>>>
>>>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>> gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o
>>> -L../../make
>>> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d
>>> -lnum
>>> -lutils -lalert
-lconst -lmtx -lmesaklu -lmesalapack -lmesablas
>>>
>>> 58c58
>>> <
rne20ap_to_mg24 0.0000000000000000E+00
>>> --- field 2
relative error 1.00e+00
>>> >
rne20ap_to_mg24 1.3318310086100496E-08
>>> 60c60
>>> < rmg24ap_to_si28
0.0000000000000000E+00
>>> --- field 2 relative error
1.00e+00
>>> > rmg24ap_to_si28
2.6558494648638122E-06
>>> 62c62
>>> <
r_c12_to_he4_he4_he4 0.0000000000000000E+00
>>> --- field 2 relative error 1.00e+00
>>>
> r_c12_to_he4_he4_he4 1.4771305847143582E-26
>>> 63c63
>>> <
r_ne20_ga_o16 0.0000000000000000E+00
>>> --- field 2
relative error 1.00e+00
>>> >
r_ne20_ga_o16 3.8122575515639085E-16
>>>
>>> /Users/arras/stars/mesa/rates/test
>>> TEST
FAILED -- compare test_output to tmp.txt
>>>
>>>
>>> /Users/arras/stars/mesa/rates
>>> ./build_and_test FAILED
>>>
>>>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>>
>>>
>>>
Comparing the two files gave:
>>>
>>>
>>>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff
test_output tmp.txt
>>> 1c1
>>> <
>>> ---
>>> >
>>> 5c5
>>> <
>>> ---
>>> >
>>> 21c21
>>> <
rn15pg_aux 3.0733146900102957E+02
>>> ---
>>> > rn15pg_aux
3.0733146900102952E+02
>>> 26c26
>>> <
r_mg24_ag_si28 7.3991076437333121E-04
>>> ---
>>> >
r_mg24_ag_si28 7.3991076437333111E-04
>>> 31c31
>>> <
>>> ---
>>> >
>>> 33,34c33,34
>>> <
>>>
<
>>> ---
>>> >
>>>
>
>>> 38c38
>>> <
>>>
---
>>> >
>>> 58c58
>>> <
rne20ap_to_mg24 1.3318310086100496E-08
>>> ---
>>> >
rne20ap_to_mg24 0.0000000000000000E+00
>>> 60c60
>>> < rmg24ap_to_si28
2.6558494648638122E-06
>>> ---
>>> >
rmg24ap_to_si28 0.0000000000000000E+00
>>> 62,64c62,64
>>> <
r_c12_to_he4_he4_he4 1.4771305847143582E-26
>>> <
r_ne20_ga_o16 3.8122575515639085E-16
>>> <
>>> ---
>>> >
r_c12_to_he4_he4_he4 0.0000000000000000E+00
>>>
> r_ne20_ga_o16 0.0000000000000000E+00
>>> >
>>> 66,69c66,69
>>>
<
>>> < FL_epsnuc_3alf
1.1675035548327446E+21
>>> <
>>> <
>>> ---
>>> >
>>> >
FL_epsnuc_3alf 1.1675035548327443E+21
>>>
>
>>> >
>>> 73c73
>>>
<
>>> ---
>>> >
>>>
75c75
>>> <
>>> ---
>>>
>
>>> 77c77
>>> <
>>>
---
>>> >
>>>
>>>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>>>
>>> So they only differ by a tiny amount.
>>>
>>> Oddly, the first time I tried the
installation it barfed on the mtx
>>> routine. Then just for
the fun of it I tried doing ./install again and
>>> it
>>> got through mtx,
>>> but then stopped on
rates, and is stuck there no matter how many times
>>> I
>>> try ./install.
>>>
>>> Help!
>>>
>>> cheers,
>>>
>>> Phil
>>>
>>>
>>>
>>>
------------------------------------------------------------------------------
>>> BlackBerry® DevCon Americas, Oct. 18-20, San
Francisco, CA
>>> Learn about the latest advances in
developing for the
>>> BlackBerry® mobile platform
with sessions, labs & more.
>>> See new tools and
technologies. Register for BlackBerry® DevCon
>>>
today!
>>> http://p.sf.net/sfu/rim-devcon-copy1
>>> _______________________________________________
>>> mesa-users mailing list
>>>
mes...@li...
>>>
https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>
>>
>>
>>
------------------------------------------------------------------------------
>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco,
CA
>> Learn about the latest advances in developing for the
>> BlackBerry® mobile platform with sessions, labs &
more.
>> See new tools and technologies. Register for
BlackBerry® DevCon
>>
today!http://p.sf.net/sfu/rim-devcon-copy1
>>
>>
>> _______________________________________________
>>
mesa-users mailing
>>
lis...@li...https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>>
>>
------------------------------------------------------------------------------
>> All the data continuously generated in your IT infrastructure
contains a
>> definitive record of customers, application
performance, security
>> threats, fraudulent activity and more.
Splunk takes this data and makes
>> sense of it. Business
sense. IT sense. Common sense.
>>
http://p.sf.net/sfu/splunk-d2dcopy1
>>
_______________________________________________
>> mesa-users
mailing list
>> mes...@li...
>>
https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
>
> --
>
-------------------------------------------------------------------------
> "No word from Landau, No thought from Liefshitz" -
Landau's wife
>
> "Science is interesting, and if
you don't agree, you can fuck off" -
> Editor
> of
New Scientist Magazine
>
> Three out of two people have
difficulties with fractions.
>
> Kenyan proverb:
"Take care of the Earth. It was not given to you by your
>
parents; it was loaned to you by your children."
>
>
"The Bible tells us how to go to heaven, not how the heavens go"
Galileo
>
> --
> This message has been scanned
for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
>
>
------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure
contains a
> definitive record of customers, application
performance, security
> threats, fraudulent activity and more.
Splunk takes this data and makes
> sense of it. Business sense. IT
sense. Common sense.
>
http://p.sf.net/sfu/splunk-d2dcopy1_______________________________________________
> mesa-users mailing list
>
mes...@li...
>
https://lists.sourceforge.net/lists/listinfo/mesa-users
>
--
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
|
|
From: Tuguldur S. <tug...@em...> - 2011-09-21 23:27:44
|
did you guys set the number of threads correctly? My issue in /mesa/star/mtx/test/ was solved by setting the correct number of threads (2 in my case): $ export OMP_NUM_THREADS=2 Tuguldur 2011/9/21 Larry Pinsonneault <lpi...@ha...> > ** > Hi, > > I get the same result as Aaron and Phil. The installation fails in rates > with > exactly the same six mismatches. > > I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba Satellite.A665. > > Larry Pinsonneault > > > On 09/19/2011 09:05 AM, Aaron Dotter wrote: > > Hi, > > I'll add my tale of woe to Phil's. Everything goes fine until rates. > Looks like Phil and I are consistent, at least. > > /Users/dotter/mesa3611/rates > building rates package. > > make: `librates.a' is up to date. > make: `librates.a' is up to date. > gfortran -fopenmp -o ../tester test_rates.o -L../../make -lrates > -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum -lutils > -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make > -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum > -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas > > 58c58 > < rne20ap_to_mg24 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > rne20ap_to_mg24 1.3318310086100496E-08 > 60c60 > < rmg24ap_to_si28 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > rmg24ap_to_si28 2.6558494648638122E-06 > 62c62 > < r_c12_to_he4_he4_he4 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > r_c12_to_he4_he4_he4 1.4771305847143582E-26 > 63c63 > < r_ne20_ga_o16 0.0000000000000000E+00 > --- field 2 relative error 1.00e+00 > > r_ne20_ga_o16 3.8122575515639085E-16 > > /Users/dotter/mesa3611/rates/test > TEST FAILED -- compare test_output to tmp.txt > > > /Users/dotter/mesa3611/rates > ./build_and_test FAILED > > This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2. > > Aaron > > > > > On Mon, Sep 19, 2011 at 8:30 AM, Phil Arras <pl...@vi...> wrote: > >> >> Greetings, >> >> I encountered a compilation error for version 3611, for Mac OS X (10.6.8), >> with gfortran 4.6.1: >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> gfortran -fopenmp -o ../show_rates reaction_rate_from_cache.o -L../../make >> -lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum >> -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas >> >> 58c58 >> < rne20ap_to_mg24 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > rne20ap_to_mg24 1.3318310086100496E-08 >> 60c60 >> < rmg24ap_to_si28 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > rmg24ap_to_si28 2.6558494648638122E-06 >> 62c62 >> < r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> 63c63 >> < r_ne20_ga_o16 0.0000000000000000E+00 >> --- field 2 relative error 1.00e+00 >> > r_ne20_ga_o16 3.8122575515639085E-16 >> >> /Users/arras/stars/mesa/rates/test >> TEST FAILED -- compare test_output to tmp.txt >> >> >> /Users/arras/stars/mesa/rates >> ./build_and_test FAILED >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> >> >> Comparing the two files gave: >> >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff test_output tmp.txt >> 1c1 >> < >> --- >> > >> 5c5 >> < >> --- >> > >> 21c21 >> < rn15pg_aux 3.0733146900102957E+02 >> --- >> > rn15pg_aux 3.0733146900102952E+02 >> 26c26 >> < r_mg24_ag_si28 7.3991076437333121E-04 >> --- >> > r_mg24_ag_si28 7.3991076437333111E-04 >> 31c31 >> < >> --- >> > >> 33,34c33,34 >> < >> < >> --- >> > >> > >> 38c38 >> < >> --- >> > >> 58c58 >> < rne20ap_to_mg24 1.3318310086100496E-08 >> --- >> > rne20ap_to_mg24 0.0000000000000000E+00 >> 60c60 >> < rmg24ap_to_si28 2.6558494648638122E-06 >> --- >> > rmg24ap_to_si28 0.0000000000000000E+00 >> 62,64c62,64 >> < r_c12_to_he4_he4_he4 1.4771305847143582E-26 >> < r_ne20_ga_o16 3.8122575515639085E-16 >> < >> --- >> > r_c12_to_he4_he4_he4 0.0000000000000000E+00 >> > r_ne20_ga_o16 0.0000000000000000E+00 >> > >> 66,69c66,69 >> < >> < FL_epsnuc_3alf 1.1675035548327446E+21 >> < >> < >> --- >> > >> > FL_epsnuc_3alf 1.1675035548327443E+21 >> > >> > >> 73c73 >> < >> --- >> > >> 75c75 >> < >> --- >> > >> 77c77 >> < >> --- >> > >> >> -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >> >> So they only differ by a tiny amount. >> >> Oddly, the first time I tried the installation it barfed on the mtx >> routine. Then just for the fun of it I tried doing ./install again and it >> got through mtx, >> but then stopped on rates, and is stuck there no matter how many times I >> try ./install. >> >> Help! >> >> cheers, >> >> Phil >> >> >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs & more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> _______________________________________________ >> mesa-users mailing list >> mes...@li... >> https://lists.sourceforge.net/lists/listinfo/mesa-users >> > > > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today!http://p.sf.net/sfu/rim-devcon-copy1 > > > _______________________________________________ > mesa-users mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/mesa-users > > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2dcopy1 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > -- ------------------------------------------------------------------------- "No word from Landau, No thought from Liefshitz" - Landau's wife "Science is interesting, and if you don't agree, you can fuck off" - Editor of New Scientist Magazine Three out of two people have difficulties with fractions. Kenyan proverb: "Take care of the Earth. It was not given to you by your parents; it was loaned to you by your children." "The Bible tells us how to go to heaven, not how the heavens go" Galileo |
|
From: Larry P. <lpi...@ha...> - 2011-09-21 21:25:39
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
Hi,<br>
<br>
I get the same result as Aaron and Phil. The installation fails in
rates with <br>
exactly the same six mismatches.<br>
<br>
I am running Ubuntu 11.4 with gfortran 4.5.2 on a Toshiba
Satellite.A665.<br>
<br>
Larry Pinsonneault<br>
<br>
On 09/19/2011 09:05 AM, Aaron Dotter wrote:
<blockquote
cite="mid:CAN5--jM=K2F...@ma..."
type="cite">Hi,
<div><br>
</div>
<div>I'll add my tale of woe to Phil's. Everything goes fine
until rates. Looks like Phil and I are consistent, at least.</div>
<div><br>
</div>
<div>
<div>/Users/dotter/mesa3611/rates</div>
<div>building rates package.</div>
<div><br>
</div>
<div>make: `librates.a' is up to date.</div>
<div>make: `librates.a' is up to date.</div>
<div>gfortran -fopenmp -o ../tester test_rates.o -L../../make
-lrates -L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas</div>
<div>gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o -L../../make -lrates -L../../../lib
-lreaclib -lweak -lchem -linterp_2d -linterp_1d -lnum -lutils
-lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas</div>
<div><br>
</div>
<div>58c58</div>
<div>< rne20ap_to_mg24
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> rne20ap_to_mg24
1.3318310086100496E-08</div>
<div>60c60</div>
<div>< rmg24ap_to_si28
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> rmg24ap_to_si28
2.6558494648638122E-06</div>
<div>62c62</div>
<div>< r_c12_to_he4_he4_he4
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> r_c12_to_he4_he4_he4
1.4771305847143582E-26</div>
<div>63c63</div>
<div>< r_ne20_ga_o16
0.0000000000000000E+00</div>
<div>--- field 2 relative error 1.00e+00</div>
<div>> r_ne20_ga_o16
3.8122575515639085E-16</div>
<div><br>
</div>
<div>/Users/dotter/mesa3611/rates/test</div>
<div>TEST FAILED -- compare test_output to tmp.txt</div>
<div><br>
</div>
<div><br>
</div>
<div>/Users/dotter/mesa3611/rates</div>
<div>./build_and_test FAILED</div>
<div>
<br>
</div>
<div>This is MESA 3611 on Mac OS X 10.6.8 with gfortran 4.5.2.</div>
<div><br>
</div>
<div>Aaron</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<br>
<div class="gmail_quote">On Mon, Sep 19, 2011 at 8:30 AM, Phil
Arras <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:pl...@vi...">pl...@vi...</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;"><br>
Greetings,<br>
<br>
I encountered a compilation error for version 3611, for Mac
OS X (10.6.8), with gfortran 4.6.1:<br>
<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
gfortran -fopenmp -o ../show_rates
reaction_rate_from_cache.o -L../../make -lrates
-L../../../lib -lreaclib -lweak -lchem -linterp_2d
-linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu
-lmesalapack -lmesablas<br>
<br>
58c58<br>
< rne20ap_to_mg24
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> rne20ap_to_mg24
1.3318310086100496E-08<br>
60c60<br>
< rmg24ap_to_si28
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> rmg24ap_to_si28
2.6558494648638122E-06<br>
62c62<br>
< r_c12_to_he4_he4_he4
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> r_c12_to_he4_he4_he4
1.4771305847143582E-26<br>
63c63<br>
< r_ne20_ga_o16
0.0000000000000000E+00<br>
--- field 2 relative error 1.00e+00<br>
> r_ne20_ga_o16
3.8122575515639085E-16<br>
<br>
/Users/arras/stars/mesa/rates/test<br>
TEST FAILED -- compare test_output to tmp.txt<br>
<br>
<br>
/Users/arras/stars/mesa/rates<br>
./build_and_test FAILED<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
<br>
<br>
<br>
Comparing the two files gave:<br>
<br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
Phil-Arras-MacBook-Pro:mesa/rates/test] arras% diff
test_output tmp.txt<br>
1c1<br>
<<br>
---<br>
><br>
5c5<br>
<<br>
---<br>
><br>
21c21<br>
< rn15pg_aux
3.0733146900102957E+02<br>
---<br>
> rn15pg_aux
3.0733146900102952E+02<br>
26c26<br>
< r_mg24_ag_si28
7.3991076437333121E-04<br>
---<br>
> r_mg24_ag_si28
7.3991076437333111E-04<br>
31c31<br>
<<br>
---<br>
><br>
33,34c33,34<br>
<<br>
<<br>
---<br>
><br>
><br>
38c38<br>
<<br>
---<br>
><br>
58c58<br>
< rne20ap_to_mg24
1.3318310086100496E-08<br>
---<br>
> rne20ap_to_mg24
0.0000000000000000E+00<br>
60c60<br>
< rmg24ap_to_si28
2.6558494648638122E-06<br>
---<br>
> rmg24ap_to_si28
0.0000000000000000E+00<br>
62,64c62,64<br>
< r_c12_to_he4_he4_he4
1.4771305847143582E-26<br>
< r_ne20_ga_o16
3.8122575515639085E-16<br>
<<br>
---<br>
> r_c12_to_he4_he4_he4
0.0000000000000000E+00<br>
> r_ne20_ga_o16
0.0000000000000000E+00<br>
><br>
66,69c66,69<br>
<<br>
< FL_epsnuc_3alf
1.1675035548327446E+21<br>
<<br>
<<br>
---<br>
><br>
> FL_epsnuc_3alf
1.1675035548327443E+21<br>
><br>
><br>
73c73<br>
<<br>
---<br>
><br>
75c75<br>
<<br>
---<br>
><br>
77c77<br>
<<br>
---<br>
><br>
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------<br>
<br>
So they only differ by a tiny amount.<br>
<br>
Oddly, the first time I tried the installation it barfed on
the mtx routine. Then just for the fun of it I tried doing
./install again and it got through mtx,<br>
but then stopped on rates, and is stuck there no matter how
many times I try ./install.<br>
<br>
Help!<br>
<br>
cheers,<br>
<br>
Phil<br>
<br>
<br>
------------------------------------------------------------------------------<br>
BlackBerry&reg; DevCon Americas, Oct. 18-20, San
Francisco, CA<br>
Learn about the latest advances in developing for the<br>
BlackBerry&reg; mobile platform with sessions, labs
& more.<br>
See new tools and technologies. Register for
BlackBerry&reg; DevCon today!<br>
<a moz-do-not-send="true"
href="http://p.sf.net/sfu/rim-devcon-copy1"
target="_blank">http://p.sf.net/sfu/rim-devcon-copy1</a><br>
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BlackBerry&reg; DevCon Americas, Oct. 18-20, San Francisco, CA
Learn about the latest advances in developing for the
BlackBerry&reg; mobile platform with sessions, labs & more.
See new tools and technologies. Register for BlackBerry&reg; DevCon today!
<a class="moz-txt-link-freetext" href="http://p.sf.net/sfu/rim-devcon-copy1">http://p.sf.net/sfu/rim-devcon-copy1</a> </pre>
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