Menu
▾
▴
mesa-users — open list for mesa comments, questions, & answers
This list is closed, nobody may subscribe to it.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(2) |
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(6) |
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
(8) |
Dec
(5) |
| 2009 |
Jan
(5) |
Feb
(1) |
Mar
(3) |
Apr
(4) |
May
(4) |
Jun
|
Jul
|
Aug
|
Sep
(8) |
Oct
|
Nov
(1) |
Dec
(13) |
| 2010 |
Jan
|
Feb
(6) |
Mar
(4) |
Apr
(1) |
May
(10) |
Jun
(43) |
Jul
(37) |
Aug
(3) |
Sep
(6) |
Oct
(26) |
Nov
(17) |
Dec
(29) |
| 2011 |
Jan
(28) |
Feb
(18) |
Mar
(42) |
Apr
(18) |
May
(13) |
Jun
(32) |
Jul
(32) |
Aug
(25) |
Sep
(46) |
Oct
(41) |
Nov
(36) |
Dec
(43) |
| 2012 |
Jan
(92) |
Feb
(120) |
Mar
(40) |
Apr
(75) |
May
(40) |
Jun
(93) |
Jul
(115) |
Aug
(67) |
Sep
(38) |
Oct
(92) |
Nov
(95) |
Dec
(47) |
| 2013 |
Jan
(171) |
Feb
(200) |
Mar
(100) |
Apr
(134) |
May
(112) |
Jun
(142) |
Jul
(123) |
Aug
(66) |
Sep
(175) |
Oct
(236) |
Nov
(141) |
Dec
(98) |
| 2014 |
Jan
(91) |
Feb
(88) |
Mar
(126) |
Apr
(63) |
May
(123) |
Jun
(122) |
Jul
(105) |
Aug
(83) |
Sep
(114) |
Oct
(90) |
Nov
(181) |
Dec
(85) |
| 2015 |
Jan
(111) |
Feb
(120) |
Mar
(161) |
Apr
(95) |
May
(93) |
Jun
(185) |
Jul
(170) |
Aug
(119) |
Sep
(128) |
Oct
(110) |
Nov
(145) |
Dec
(92) |
| 2016 |
Jan
(105) |
Feb
(106) |
Mar
(101) |
Apr
(59) |
May
(96) |
Jun
(168) |
Jul
(110) |
Aug
(183) |
Sep
(85) |
Oct
(79) |
Nov
(87) |
Dec
(86) |
| 2017 |
Jan
(100) |
Feb
(77) |
Mar
(85) |
Apr
(52) |
May
(60) |
Jun
(63) |
Jul
(67) |
Aug
(24) |
Sep
(1) |
Oct
|
Nov
(2) |
Dec
|
|
From: Bill P. <pa...@ki...> - 2011-10-26 14:23:20
|
Hi,
The "relax" needs to have a starting value for max opacity
which it will then incrementally change to the new max value.
Take a look at the inlists in test_suite/limit_max_opacity.
Here are the relevant lines from inlist_2 in that directory.
in &star_job
relax_opacity_max = .true.
new_opacity_max = 0.3
opacity_max_multiplier = 0.99
and in &controls
opacity_max = 2 ! use this as starting value for relaxing to smaller max opacity
-Bill
On Oct 26, 2011, at 7:15 AM, jin...@ca... wrote:
> Hello,
>
> I tried to use relax_opacity adding these lines in the star_job in inlist:
>
> relax_opacity_max = .true.
> new_opacity_max = 0.1
> opacity_max_multiplier = 0.99
>
> But it reports err because the current opacity_max=-1. What does that
> mean? No constraint on opacity at all?
>
> I would like to use this relax_opacity to manually turn off the
> convection. Is this idea right?
>
> If yes, then how shall I carry out relax_opacity please?
>
> Thank you very much :-)
>
> Sincerely,
> Jing
>
>
> ------------------------------------------------------------------------------
> The demand for IT networking professionals continues to grow, and the
> demand for specialized networking skills is growing even more rapidly.
> Take a complimentary Learning@Cisco Self-Assessment and learn
> about Cisco certifications, training, and career opportunities.
> http://p.sf.net/sfu/cisco-dev2dev
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
|
|
From: <jin...@ca...> - 2011-10-26 14:15:14
|
Hello,
I tried to use relax_opacity adding these lines in the star_job in inlist:
relax_opacity_max = .true.
new_opacity_max = 0.1
opacity_max_multiplier = 0.99
But it reports err because the current opacity_max=-1. What does that
mean? No constraint on opacity at all?
I would like to use this relax_opacity to manually turn off the
convection. Is this idea right?
If yes, then how shall I carry out relax_opacity please?
Thank you very much :-)
Sincerely,
Jing
|
|
From: <jin...@ca...> - 2011-10-26 14:11:52
|
Hello :-)
I tried to use relax_opacity in star_jobs by:
relax_opacity_max = .true.
new_opacity_max = 0.1
opacity_max_multiplier = 0.99
|
|
From: Bill P. <pa...@ki...> - 2011-10-26 14:09:50
|
Hi,
This should be just a matter of adding some more things to your log_columns.list
so that it will have all of the information needed to make the Kipp plots.
Here's a sample log_columns.list that I use for massive stars.
I think these are the crucial additions
mixing_regions 40
burning_regions 80
and
! mass fractions near center
center h1
center he4
center c12
center n14
center o16
center ne20
center si28
center s32
center ar36
center ca40
center fe54
center fe56
center ni56
center cr56
! etc. -- do as many of these 'center' commands as desired
My apologies for the state of the Tioga scripts in mesa -- they are something I've
tossed together over the years for my own use without doing a careful reworking to make
them in any way "user friendly".
Let me know if you still have problems with the Kipp plots -- they are very useful!
Cheers,
Bill
On Oct 26, 2011, at 1:46 AM, Roni Waldman wrote:
> Hi,
> When plotting any of the Kippenhahn plot options which is supposed to show the power, I only get the scale on the right, but no colors on the plot.
> Please see attached plot.
> Any suggestions?
> Thanks,
> Roni
> <kipp_burn_mix.pdf>------------------------------------------------------------------------------
> The demand for IT networking professionals continues to grow, and the
> demand for specialized networking skills is growing even more rapidly.
> Take a complimentary Learning@Cisco Self-Assessment and learn
> about Cisco certifications, training, and career opportunities.
> http://p.sf.net/sfu/cisco-dev2dev_______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
|
|
From: Bill P. <pa...@ki...> - 2011-10-26 13:57:54
|
Hi Roni, Good to hear from your! Back in the old days (last year) Ledoux wasn't yet in as an option, so the results in the paper were run with Schwarzschild. The inlist in mesa/star/test_suite/15M_si_burn is like what we used for the paper. I encourage you to get in touch with Tuguldur Sukhbold for more up-to-date information about mesa + massive stars. He's making good use of the new options in mesa for Ledoux and semiconvection for stars from 15-60 Msun. Perhaps he'll be able to make one of his inlists available -- they are more advanced than anything I've done! Cheers, Bill On Oct 26, 2011, at 1:27 AM, Roni Waldman wrote: > Hi, > Could anyone tell me whether the evolution of 15, 20 and 25 Msun models presented in the MESA paper were run with Schwarzschild or Ledoux criterion? > Is there a sample inlist file available for these runs? > Thanks, > Roni > ------------------------------------------------------------------------------ > The demand for IT networking professionals continues to grow, and the > demand for specialized networking skills is growing even more rapidly. > Take a complimentary Learning@Cisco Self-Assessment and learn > about Cisco certifications, training, and career opportunities. > http://p.sf.net/sfu/cisco-dev2dev_______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Roni W. <ron...@gm...> - 2011-10-26 08:27:25
|
Hi, Could anyone tell me whether the evolution of 15, 20 and 25 Msun models presented in the MESA paper were run with Schwarzschild or Ledoux criterion? Is there a sample inlist file available for these runs? Thanks, Roni |
|
From: <jin...@ca...> - 2011-10-25 04:04:37
|
Hello :-) How to turn on diffusion in mesa (version 3290) please? I know how to turn it on in version 2664. But it seems the method changes. Thank you :-) Sincerely, Jing |
|
From: Sam J. <s.w...@ep...> - 2011-10-21 14:44:58
|
Hi Umberto, Are these hdf5 files to use with MPPNP? If I understand correctly, then you will need an installation of SE, and in your MESA makefile set "USE_SE" to true, and give it the path to your SE installation, then re-compile. You can then set use_se_output (or something similar) to .true. in your work directory inlist, which also requires an se.input file in your work dir. If this helps, let me know and I can send you an example se.input file. Best, Sam. On 21/10/11 14:33, umb...@un... wrote: > Hi all, > Working in MESA, I tried to look for any hd.h5 output file type to be > read by phyton, but I did't find anything.. I dond't if actually they > don't exist or maybe I didn't look in the correct places.. does > anybody know something about that? > All the best, > > Umberto Battino > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > ------------------------------------------------------------------------------ > The demand for IT networking professionals continues to grow, and the > demand for specialized networking skills is growing even more rapidly. > Take a complimentary Learning@Cisco Self-Assessment and learn > about Cisco certifications, training, and career opportunities. > http://p.sf.net/sfu/cisco-dev2dev > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users -- Sam Jones Astrophysics Group, Keele University sw...@as... |
|
From: <umb...@un...> - 2011-10-21 13:33:48
|
Hi all, Working in MESA, I tried to look for any hd.h5 output file type to be read by phyton, but I did't find anything.. I dond't if actually they don't exist or maybe I didn't look in the correct places.. does anybody know something about that? All the best, Umberto Battino ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |
|
From: Bill P. <pa...@ki...> - 2011-10-19 17:49:59
|
Hi,
This is just for fun -- did you know that you can add your own title to a pgstar plot?
here's an example where I've added "HD49385" at the top by adding these lines to the inlist
(at the end of this email I've copied info from star/public/pgstar_defaults.dek about what these do)
show_TRho_Profile_annotation1 = .true.
annotation1_ci = 1 ! color index
annotation1_ch = 1.1 ! character height
annotation1_lw = 1 ! line width
annotation1_cf = 1 ! character font (1=sans serif, 2=roman, 3=italic, 4=script)
annotation1_side = 'T' ! T, B, L, or R
annotation1_disp = 1.8 ! displacement perpendicular to axis
annotation1_coord = 0.5 ! fractional location along axis
annotation1_fjust = 0.5 ! 0 => left justified, 0.5 => centered, 1 => right justified
annotation1_text = 'HD49385'
currently you can have up to 3 annotation strings. this isn't a really general solution, but it can be useful at times.
cheers,
Bill
! "annotation" strings -- provide args for PGMTXT
! Write text at a position specified relative to the viewport (outside
! or inside). The text is written using the current values of
! attributes color-index, line-width, character-height, and
! character-font.
!
! SIDE : must include one of the characters 'B', 'L', 'T',
! or 'R' signifying the Bottom, Left, Top, or Right
! margin of the viewport. If it includes 'LV' or
! 'RV', the string is written perpendicular to the
! frame rather than parallel to it.
! DISP : the displacement of the character string from the
! specified edge of the viewport, measured outwards
! from the viewport in units of the character
! height. Use a negative value to write inside the
! viewport, a positive value to write outside.
! COORD : the location of the character string along the
! specified edge of the viewport, as a fraction of
! the length of the edge.
! FJUST : controls justification of the string parallel to
! the specified edge of the viewport. If
! FJUST = 0.0, the left-hand end of the string will
! be placed at COORD; if JUST = 0.5, the center of
! the string will be placed at COORD; if JUST = 1.0,
! the right-hand end of the string will be placed at
! at COORD. Other values between 0 and 1 give inter-
! mediate placing, but they are not very useful.
! TEXT : the text string to be plotted. Trailing spaces are
! ignored when justifying the string, but leading
! spaces are significant.
|
|
From: S.Olemskoy <os...@is...> - 2011-10-19 08:44:01
|
Hello everyone, I'm trying to install MESA version 3661, using ifortran version f64_2011.3.174, and I have the problem with installation: [sergey@comp-Core2-Duo-3eab30 mesa]# ./install checking if ndiff is installed ... ./install_num_only: line 50: utils/ndiff/bin/ndiff: No such file or directory no! running install_ndiff ndiff installed in utils/ndiff/ ../mesa/const/ bilding const package. ../utils/build_and_test: line 24: make: command not found ../mesa/const/make FAILED ../mesa/const/ ./build_and_test FAILED -- Sergey mailto:os...@is... |
|
From: Jeff A. <an...@as...> - 2011-10-17 20:46:20
|
Hello everyone,
I'm trying to install MESA version 3661, using gfortran version 4.6.1.
(probably not a compiler issue?)
I ran ./install, and things appeared to go smoothly, until I ran into a
segmentation fault when the install script ran the test program in
/mesa/eos. The following is the last part of the output:
read ../../data/eosDT_data/helm_table.dat
write ../../data/eosDT_data/cache/helm_table.bin
../utils/build_and_test: line 33: 11280 Segmentation fault
./test_quietly
/home/jeff/mesa/eos/test
FAILED
/home/jeff/mesa/eos
./build_and_test FAILED
After some work, I found the offending line in the file eosDT_load_tables.f
in mesa/eos/private:
tbl(1,eosDT_ilnPgas,:,:) = tbl2(jlogPgas,:,:)*ln10
Maybe it isn't loading the eos tables correctly? That seems strange because
the install script said the eos data was successfully installed.
Any help would be greatly appreciated!!
-Jeff
|
|
From: Bill P. <pa...@ki...> - 2011-10-17 18:41:14
|
Hi, On Oct 17, 2011, at 11:17 AM, Haili Hu wrote: > I noticed that mesa gives the wrong revision number in the working directories after an update. I guess this is because the .svn directory of the working directories are not getting updated. Can this be fixed? For example by looking in the .svn directory of the MESA directory instead? It's not a big deal but just a bit confusing. I think that's an svn issue. If anyone has a solution, let me know. -Bill |
|
From: Haili Hu <ha...@as...> - 2011-10-17 18:31:42
|
Hi all, I noticed that mesa gives the wrong revision number in the working directories after an update. I guess this is because the .svn directory of the working directories are not getting updated. Can this be fixed? For example by looking in the .svn directory of the MESA directory instead? It's not a big deal but just a bit confusing. Thanks, Haili Hu --------------------------------------------- Institute of Astronomy, Room H32 University of Cambridge Madingley Road Cambridge CB3 0HA, UK phone: +44 (0) 1223 337551 e-mail: ha...@as... --------------------------------------------- |
|
From: <umb...@un...> - 2011-10-17 12:42:55
|
Hi Andrey, A few days ago I received the same message './build_and_test FAILED', even if relative to another directory.. in that case I solve the problem setting the OMP_NUM_THREADS environmental variable. Did you do that? If no, please set the OMP_NUM_THREADS environment variable to the number of cores on your machine editing your .bashrc file. Maybe this can be the solution.. All the best! Umberto Quoting Baranov Andrey <a.h...@gm...>: > Hi, everyone! > > I'm trying to start to use Mesa-code and I have the problem with > installation. It interrupts at this moment: > > -------------------------------------------------------------------------------------------------------------------------------- > gfortran -fno-range-check -fopenmp -I../../make -I../../public > -I../../../include -fbounds-check -g -c -ffree-form > ../src/test_ionization_quitely.f > gfortran -fopenmp -o ../test_quietly test_ionization_support.o > test_ionization_quitely.o -L../../make -lionization -L../../../lib > -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem > -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu > -lmesalapack -lmesablas > > 43c43 > < fneut_H 3.6569479708956187E-02 > --- field 2 relative error 1.90e-06 >> fneut_H 3.6569549142033406E-02 > 44c44 > < fneut_He 3.2842789477465928E-01 > --- field 2 relative error 1.06e-06 >> fneut_He 3.2842824377829366E-01 > 45c45 > < fneut_C 1.0327284102638811E-02 > --- field 2 relative error 2.02e-06 >> fneut_C 1.0327304925761286E-02 > 46c46 > < fneut_N 1.0504616201693818E-02 > --- field 2 relative error 2.58e-06 >> fneut_N 1.0504643319392376E-02 > 47c47 > < fneut_O 3.9039527928136968E-02 > --- field 2 relative error 2.01e-06 >> fneut_O 3.9039606493994128E-02 > 48c48 > < fneut_Ne 2.4863515935220387E-03 > --- field 2 relative error 4.97e-05 >> fneut_Ne 2.4864751214947081E-03 > 49c49 > < fneut_Mg 1.0014543866587976E-05 > --- field 2 relative error 2.63e-05 >> fneut_Mg 1.0014807481571075E-05 > 50c50 > < fneut_Si 9.6540377797243190E-04 > --- field 2 relative error 3.32e-06 >> fneut_Si 9.6540698602112774E-04 > 51c51 > < fneut_Fe 4.4462746232157665E-06 > --- field 2 relative error 9.30e-05 >> fneut_Fe 4.4466883201418637E-06 > > /home/andrey/mesa3661/ionization/test > TEST FAILED -- compare test_output to tmp.txt > > > /home/andrey/mesa3661/ionization > ./build_and_test FAILED > -------------------------------------------------------------------------------------------------------------------------------- > > I have Ubuntu 11.04, version of Mesa is 3661 (also have tried 3633 - > the same result), gfortran: > > $ gfortran -v > Using built-in specs. > COLLECT_GCC=gfortran > COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6.1/lto-wrapper > Target: i686-linux-gnu > Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro > 4.6.1-9ubuntu3' > --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs > --enable-languages=c,c++,fortran,objc,obj-c++,go --prefix=/usr > --program-suffix=-4.6 --enable-shared --enable-linker-build-id > --with-system-zlib --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 > --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu > --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-plugin > --enable-objc-gc --enable-targets=all --disable-werror > --with-arch-32=i686 --with-tune=generic --enable-checking=release > --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu > Thread model: posix > gcc version 4.6.1 (Ubuntu/Linaro 4.6.1-9ubuntu3) > > And also I have tried to setup different values of OMP_NUM_THREADS (1, > 2, 4), but always have the same error. > > Thank you! > > Best, > Andrey. > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. |
|
From: Bill P. <pa...@ki...> - 2011-10-16 13:49:40
|
Hi, There is a great program currently running here at KITP on asteroseismology. http://www.kitp.ucsb.edu/activities/dbdetails?acro=asteroseismo11 I recently gave an informal talk for the participants discussing recent efforts to make mesa useful in this area of research. Like other KITP talks, this one was recorded and is available for your viewing pleasure. ;-) http://online.kitp.ucsb.edu/online/asteroseismo11/paxton/ If you are interested in trying mesa for asteroseismology, please let me know. It has reached the stage of being an interesting candidate, but it still needs testing by people other than myself. In particular, we need to have comparisons with detailed results from other codes on well studied cases. Things are looking good so far, but more testing will be required before we can declare it "science ready" for asteroseismology. Cheers, Bill |
|
From: Baranov A. <a.h...@gm...> - 2011-10-15 14:27:33
|
Hi, everyone! I'm trying to start to use Mesa-code and I have the problem with installation. It interrupts at this moment: -------------------------------------------------------------------------------------------------------------------------------- gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -fbounds-check -g -c -ffree-form ../src/test_ionization_quitely.f gfortran -fopenmp -o ../test_quietly test_ionization_support.o test_ionization_quitely.o -L../../make -lionization -L../../../lib -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu -lmesalapack -lmesablas 43c43 < fneut_H 3.6569479708956187E-02 --- field 2 relative error 1.90e-06 > fneut_H 3.6569549142033406E-02 44c44 < fneut_He 3.2842789477465928E-01 --- field 2 relative error 1.06e-06 > fneut_He 3.2842824377829366E-01 45c45 < fneut_C 1.0327284102638811E-02 --- field 2 relative error 2.02e-06 > fneut_C 1.0327304925761286E-02 46c46 < fneut_N 1.0504616201693818E-02 --- field 2 relative error 2.58e-06 > fneut_N 1.0504643319392376E-02 47c47 < fneut_O 3.9039527928136968E-02 --- field 2 relative error 2.01e-06 > fneut_O 3.9039606493994128E-02 48c48 < fneut_Ne 2.4863515935220387E-03 --- field 2 relative error 4.97e-05 > fneut_Ne 2.4864751214947081E-03 49c49 < fneut_Mg 1.0014543866587976E-05 --- field 2 relative error 2.63e-05 > fneut_Mg 1.0014807481571075E-05 50c50 < fneut_Si 9.6540377797243190E-04 --- field 2 relative error 3.32e-06 > fneut_Si 9.6540698602112774E-04 51c51 < fneut_Fe 4.4462746232157665E-06 --- field 2 relative error 9.30e-05 > fneut_Fe 4.4466883201418637E-06 /home/andrey/mesa3661/ionization/test TEST FAILED -- compare test_output to tmp.txt /home/andrey/mesa3661/ionization ./build_and_test FAILED -------------------------------------------------------------------------------------------------------------------------------- I have Ubuntu 11.04, version of Mesa is 3661 (also have tried 3633 - the same result), gfortran: $ gfortran -v Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6.1/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.1-9ubuntu3' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++,go --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix gcc version 4.6.1 (Ubuntu/Linaro 4.6.1-9ubuntu3) And also I have tried to setup different values of OMP_NUM_THREADS (1, 2, 4), but always have the same error. Thank you! Best, Andrey. |
|
From: Bill P. <pa...@ki...> - 2011-10-13 14:23:13
|
Hi Umberto, Glad you are ready to go now. What sort of problems are you planning to try? You might look in star/test_suite to see if there is something you can use as an initial guide. Don't hesitate to send questions to mesa-users, and don't hesitate to answer questions you see there when you can! Cheers, Bill On Oct 13, 2011, at 7:11 AM, umb...@un... wrote: > Dear Bill, Ehsan and Aaron, > thanks very much! Now all works correctly.. :) > All the best. > > Umberto > > Quoting Bill Paxton <pa...@ki...>: > >> >> On Oct 12, 2011, at 8:53 AM, umb...@un... wrote: >> >>> Yes, I did it. I did ./install and all seemed to work except a final message saying >>> >>> /home/umberto/mtx/test >>> FAILED >> >> >> Hi, >> >> Please set the OMP_NUM_THREADS environment variable to the number of cores on your machine. >> >> Thanks, >> Bill >> >> [Ehsan, thanks for helping with this!!!] >> >> >>> >>> >>> /home/umberto/mesa/mtx >>> ./build_and_test FAILED >>> >>> I tried to investigate about that but I don't know if it rapresent the main problem.. >>> >>> Umberto >>> >>> Quoting Ehsan Moravveji <mor...@ia...>: >>> >>>> >>>> <html><div> >>>> Hi. >>>> Can you first make clear you successfully installed mesa or >>>> not? >>>> did you do ./install in your main mesa directory? >>>> Ehsan. >>>> >>>>> Hi everyone, >>>>> I just downloaded Mesa and trying to >>>> install it. I followed all the >>>>> instructions and I edited the >>>> makefile_header. As soon as I want to >>>>> test all of that compiling >>>> sample.f file using Intel� Fortran Composer >>>>> XE 2011 with >>>> Ubuntu 11.04 I have the following error: >>>>> >>>>> ifort >>>> -vec-report0 -traceback -error-limit 6 -fixed -132 >>>>> >>>> -I/home/umberto/mesa/include -c ../src/sample.f >>>>> >>>> ../src/sample.f(24): error #7002: Error in opening the compiled module >>>>> file. Check INCLUDE paths. [EOS_DEF] >>>>> use >>>> eos_def >>>>> ----------^ >>>>> ../src/sample.f(25): error #7002: >>>> Error in opening the compiled module >>>>> file. Check INCLUDE paths. >>>> [EOS_LIB] >>>>> use eos_lib >>>>> ----------^ >>>>> >>>> ../src/sample.f(26): error #7002: Error in opening the compiled module >>>>> file. Check INCLUDE paths. [CHEM_DEF] >>>>> use >>>> chem_def >>>>> ----------^ >>>>> ../src/sample.f(27): error #7002: >>>> Error in opening the compiled module >>>>> file. Check INCLUDE paths. >>>> [CHEM_LIB] >>>>> use chem_lib >>>>> ----------^ >>>>> >>>> ../src/sample.f(148): error #7002: Error in opening the compiled >>>>> >>>> module file. Check INCLUDE paths. [EOS_DEF] >>>>> use >>>> eos_def >>>>> -------------^ >>>>> ../src/sample.f(149): error >>>> #7002: Error in opening the compiled >>>>> module file. Check INCLUDE >>>> paths. [EOS_LIB] >>>>> use eos_lib >>>>> >>>> -------------^ >>>>> ../src/sample.f(227): catastrophic error: Too >>>> many errors, exiting >>>>> compilation aborted for ../src/sample.f >>>> (code 1) >>>>> make: *** [sample.o] Error 1 >>>>> >>>>> Can >>>> anyone help me? >>>>> All the best, >>>>> >>>>> Umberto >>>> Battino >>>>> >>>>> >>>> ---------------------------------------------------------------- >>>>> >>>> This message was sent using IMP, the Internet Messaging Program. >>>>> >>>> >>>>> >>>>> >>>>> >>>> ------------------------------------------------------------------------------ >>>>> All the data continuously generated in your IT infrastructure >>>> contains a >>>>> definitive record of customers, application >>>> performance, security >>>>> threats, fraudulent activity and more. >>>> Splunk takes this data and makes >>>>> sense of it. Business sense. IT >>>> sense. Common sense. >>>>> http://p.sf.net/sfu/splunk-d2d-oct >>>>> _______________________________________________ >>>>> >>>> mesa-users mailing list >>>>> mes...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users >>>>> >>>> >>>>> -- >>>>> This message has been scanned for viruses and >>>>> dangerous content by MailScanner, and is >>>>> believed to be >>>> clean. >>>>> >>>>> >>>> >>>> -- >>>> This message has been scanned for viruses and >>>> dangerous content by MailScanner, and is >>>> believed to be clean. >>>> >>>> >>> >>> >>> >>> ---------------------------------------------------------------- >>> This message was sent using IMP, the Internet Messaging Program. >>> >>> >> >> > > > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > |
|
From: Aaron D. <aar...@gm...> - 2011-10-12 15:55:39
|
Hi Umberto, What version of MESA is this? Can you confirm that the module files exist in the place the compiler is looking for them? The error message is telling you that it can't find eos_def.mod and eos_lib.mod in /home/umberto/mesa/include, which is where they should be if the eos module compiled and exported correctly. Aaron On Wed, Oct 12, 2011 at 11:42 AM, <umb...@un...> wrote: > Hi everyone, > I just downloaded Mesa and trying to install it. I followed all the > instructions and I edited the makefile_header. As soon as I want to > test all of that compiling sample.f file using Intel® Fortran Composer > XE 2011 with Ubuntu 11.04 I have the following error: > > ifort -vec-report0 -traceback -error-limit 6 -fixed -132 > -I/home/umberto/mesa/include -c ../src/sample.f > ../src/sample.f(24): error #7002: Error in opening the compiled module > file. Check INCLUDE paths. [EOS_DEF] > use eos_def > ----------^ > ../src/sample.f(25): error #7002: Error in opening the compiled module > file. Check INCLUDE paths. [EOS_LIB] > use eos_lib > ----------^ > ../src/sample.f(26): error #7002: Error in opening the compiled module > file. Check INCLUDE paths. [CHEM_DEF] > use chem_def > ----------^ > ../src/sample.f(27): error #7002: Error in opening the compiled module > file. Check INCLUDE paths. [CHEM_LIB] > use chem_lib > ----------^ > ../src/sample.f(148): error #7002: Error in opening the compiled > module file. Check INCLUDE paths. [EOS_DEF] > use eos_def > -------------^ > ../src/sample.f(149): error #7002: Error in opening the compiled > module file. Check INCLUDE paths. [EOS_LIB] > use eos_lib > -------------^ > ../src/sample.f(227): catastrophic error: Too many errors, exiting > compilation aborted for ../src/sample.f (code 1) > make: *** [sample.o] Error 1 > > Can anyone help me? > All the best, > > Umberto Battino > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > |
|
From: <umb...@un...> - 2011-10-12 15:42:25
|
Hi everyone,
I just downloaded Mesa and trying to install it. I followed all the
instructions and I edited the makefile_header. As soon as I want to
test all of that compiling sample.f file using Intel® Fortran Composer
XE 2011 with Ubuntu 11.04 I have the following error:
ifort -vec-report0 -traceback -error-limit 6 -fixed -132
-I/home/umberto/mesa/include -c ../src/sample.f
../src/sample.f(24): error #7002: Error in opening the compiled module
file. Check INCLUDE paths. [EOS_DEF]
use eos_def
----------^
../src/sample.f(25): error #7002: Error in opening the compiled module
file. Check INCLUDE paths. [EOS_LIB]
use eos_lib
----------^
../src/sample.f(26): error #7002: Error in opening the compiled module
file. Check INCLUDE paths. [CHEM_DEF]
use chem_def
----------^
../src/sample.f(27): error #7002: Error in opening the compiled module
file. Check INCLUDE paths. [CHEM_LIB]
use chem_lib
----------^
../src/sample.f(148): error #7002: Error in opening the compiled
module file. Check INCLUDE paths. [EOS_DEF]
use eos_def
-------------^
../src/sample.f(149): error #7002: Error in opening the compiled
module file. Check INCLUDE paths. [EOS_LIB]
use eos_lib
-------------^
../src/sample.f(227): catastrophic error: Too many errors, exiting
compilation aborted for ../src/sample.f (code 1)
make: *** [sample.o] Error 1
Can anyone help me?
All the best,
Umberto Battino
----------------------------------------------------------------
This message was sent using IMP, the Internet Messaging Program.
|
|
From: Jean-Claude P. <jc...@gm...> - 2011-10-10 02:04:01
|
Thanks for your replies, guys. I'll start working on that. JC On 09/10/11 16:20, Aaron Dotter wrote: > Hi Jean-Claude, > > These quantities are treated as scalars, which means that the last > values that are read in the namelist will be the one that's stored. > > This would be an excellent opportunity to use the run_star_extras > functionality. For example, extras_finish_step could be modified to > save any number of models and also write out profiles at the same time. > > Aaron > > > > On Sun, Oct 9, 2011 at 5:40 PM, Jean-Claude Passy <jc...@gm... > <mailto:jc...@gm...>> wrote: > > Hi all, > > is it possible to create 2 (or more) restart files during the same > run ? I tried to add to my inlist: > > -------------------------------------------------------- > > save_model_number = 100 > > save_model_filename = 'test_1.mod' > > > save_model_number = 200 > > save_model_filename = 'test_2.mod' > > -------------------------------------------------------- > > > but only the second is created ? > Also, is there an easy way to save the corresponding profiles ? > For now I am adjusting profile_interval accordingly but it's not > ideal and will become problematic when I will be saving two models. > > Thanks a lot, > > JC > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously > valuable. > Why? It contains a definitive record of application performance, > security > threats, fraudulent activity, and more. Splunk takes this data and > makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2dcopy2 > _______________________________________________ > mesa-users mailing list > mes...@li... > <mailto:mes...@li...> > https://lists.sourceforge.net/lists/listinfo/mesa-users > > |
|
From: Aaron D. <aar...@gm...> - 2011-10-09 23:21:06
|
Hi Jean-Claude, These quantities are treated as scalars, which means that the last values that are read in the namelist will be the one that's stored. This would be an excellent opportunity to use the run_star_extras functionality. For example, extras_finish_step could be modified to save any number of models and also write out profiles at the same time. Aaron On Sun, Oct 9, 2011 at 5:40 PM, Jean-Claude Passy <jc...@gm...> wrote: > Hi all, > > is it possible to create 2 (or more) restart files during the same run ? I > tried to add to my inlist: > > -------------------------------------------------------- > save_model_number = 100 save_model_filename = 'test_1.mod' > save_model_number = 200 save_model_filename = 'test_2.mod' > -------------------------------------------------------- > but only the second is created ? > Also, is there an easy way to save the corresponding profiles ? For now I > am adjusting profile_interval accordingly but it's not ideal and will become > problematic when I will be saving two models. > > Thanks a lot, > > JC > > > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2dcopy2 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > |
|
From: Jean-Claude P. <jc...@gm...> - 2011-10-09 21:34:05
|
Hi all,
is it possible to create 2 (or more) restart files during the same run ?
I tried to add to my inlist:
--------------------------------------------------------
save_model_number = 100
save_model_filename = 'test_1.mod'
save_model_number = 200
save_model_filename = 'test_2.mod'
--------------------------------------------------------
but only the second is created ?
Also, is there an easy way to save the corresponding profiles ? For now
I am adjusting profile_interval accordingly but it's not ideal and will
become problematic when I will be saving two models.
Thanks a lot,
JC
|
|
From: Roni W. <ron...@gm...> - 2011-10-09 14:39:43
|
Hi Bill, Many thanks. So now I got an HR plot. How do I get other types of plots, e.g. a Kippenhahn plot? Cheers, Roni > -----Original Message----- > From: Bill Paxton [mailto:pa...@ki...] > Sent: יום א 09 אוקטובר 2011 16:02 > To: Roni Waldman > Subject: Re: [mesa-users] Using Tioga > > Hi Roni, > > Good to hear from you! > > On Oct 9, 2011, at 2:19 AM, Roni Waldman wrote: > > > Obviously I'm doing something basically wrong. > > you need to use the "tioga" command instead of just plain "ruby" > if the install worked okay, you should be able to get a brief "help" > just by typing tioga at the command line. It outputs the following. > Let me know if you have problems. > > Cheers, > Bill > > > > > /Users/bpaxton/mesa: tioga > > This program is a command line interface for the open-source tioga > kernel. > The tioga kernel is for creating figures and plots using Ruby, PDF, and > TeX. > Following is a brief description of the tioga command line options. > For more information, visit > http://theory.kitp.ucsb.edu/~paxton/tioga.html. > > Before any command line information is processed, tioga runs > ~/.tiogainit if it exists. > The primary use of this file is to set your default pdf viewer > command (see below). > > If there are no command line arguments, or the argument is -h, this > help info is output. > > Otherwise, the command line should start with a tioga file name (with > extension .rb). > Since the extension is known, you can skip typing it if you like. > > The remainder of the command line should consist of an optional series > of control commands > followed by a figure command. > > Any control commands are done after ~/.tiogainit and before the figure > file is loaded. > -r file runs the file (using Ruby's require method). > -C dir changes the working directory. > If there is no -C command, tioga changes the working > directory to the > location of the figure file . > -v prints version information. > > The figure command comes last and should be one of these: > -l output a list of the defined figures by number and > name. > -<num> make and show figure with index equal <num> (0 <= num > < num_figures). > -m <figs> make PDFs without showing them in the viewer. > -s <figs> make and show PDFs, each in a separate viewer window. > -p <figs> make PDFs and show the portfolio as a multi-page > document. > > If the figure command is omitted, then it defaults to -0. > > If <figs> is omitted, then tioga does all the figures defined in the > file > ordered by their definition index numbers. > > Otherwise, <figs> must be either > a defined figure name (as supplied to def_figure in the tioga > file), or > a valid ruby array index number for a figure (can be negative), or > a valid ruby range specification selecting a sequence of figures, > or > a space-less, comma-separated list of figure indices and ranges. > > For example, -s Plot1 makes and shows the pdf for the figure named > Plot1, > and -p 5,0..3,-1 makes a portfolio with the figure having index 5 > on page 1, > followed by pages showing the figures with indices 0, 1, 2, 3, and > -1. > > The viewer for showing PDFs is specified by the $pdf_viewer variable in > tioga. > The default value can be set by creating a .tiogainit file in your > home directory. > The .tiogainit file is run before any command line options are > processed. > Your current setting for $pdf_viewer is repreview. > To change it, edit ~/.tiogainit to add the line $pdf_viewer = 'my > viewer command'. > The command tioga uses to show a pdf is $pdf_viewer + ' ' + > full_PDF_filename. > You can use the -e control command to try a different viewer > setting > by doing the $pdf_viewer assignment from the command line. > > > |
|
From: Bill P. <pa...@ki...> - 2011-10-09 14:02:37
|
Hi Roni, Good to hear from you! On Oct 9, 2011, at 2:19 AM, Roni Waldman wrote: > Obviously I'm doing something basically wrong. you need to use the "tioga" command instead of just plain "ruby" if the install worked okay, you should be able to get a brief "help" just by typing tioga at the command line. It outputs the following. Let me know if you have problems. Cheers, Bill /Users/bpaxton/mesa: tioga This program is a command line interface for the open-source tioga kernel. The tioga kernel is for creating figures and plots using Ruby, PDF, and TeX. Following is a brief description of the tioga command line options. For more information, visit http://theory.kitp.ucsb.edu/~paxton/tioga.html. Before any command line information is processed, tioga runs ~/.tiogainit if it exists. The primary use of this file is to set your default pdf viewer command (see below). If there are no command line arguments, or the argument is -h, this help info is output. Otherwise, the command line should start with a tioga file name (with extension .rb). Since the extension is known, you can skip typing it if you like. The remainder of the command line should consist of an optional series of control commands followed by a figure command. Any control commands are done after ~/.tiogainit and before the figure file is loaded. -r file runs the file (using Ruby's require method). -C dir changes the working directory. If there is no -C command, tioga changes the working directory to the location of the figure file . -v prints version information. The figure command comes last and should be one of these: -l output a list of the defined figures by number and name. -<num> make and show figure with index equal <num> (0 <= num < num_figures). -m <figs> make PDFs without showing them in the viewer. -s <figs> make and show PDFs, each in a separate viewer window. -p <figs> make PDFs and show the portfolio as a multi-page document. If the figure command is omitted, then it defaults to -0. If <figs> is omitted, then tioga does all the figures defined in the file ordered by their definition index numbers. Otherwise, <figs> must be either a defined figure name (as supplied to def_figure in the tioga file), or a valid ruby array index number for a figure (can be negative), or a valid ruby range specification selecting a sequence of figures, or a space-less, comma-separated list of figure indices and ranges. For example, -s Plot1 makes and shows the pdf for the figure named Plot1, and -p 5,0..3,-1 makes a portfolio with the figure having index 5 on page 1, followed by pages showing the figures with indices 0, 1, 2, 3, and -1. The viewer for showing PDFs is specified by the $pdf_viewer variable in tioga. The default value can be set by creating a .tiogainit file in your home directory. The .tiogainit file is run before any command line options are processed. Your current setting for $pdf_viewer is repreview. To change it, edit ~/.tiogainit to add the line $pdf_viewer = 'my viewer command'. The command tioga uses to show a pdf is $pdf_viewer + ' ' + full_PDF_filename. You can use the -e control command to try a different viewer setting by doing the $pdf_viewer assignment from the command line. |
138 messages has been excluded from this view by a project administrator.
