Menu
▾
▴
mesa-users — open list for mesa comments, questions, & answers
This list is closed, nobody may subscribe to it.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(2) |
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(6) |
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
(8) |
Dec
(5) |
| 2009 |
Jan
(5) |
Feb
(1) |
Mar
(3) |
Apr
(4) |
May
(4) |
Jun
|
Jul
|
Aug
|
Sep
(8) |
Oct
|
Nov
(1) |
Dec
(13) |
| 2010 |
Jan
|
Feb
(6) |
Mar
(4) |
Apr
(1) |
May
(10) |
Jun
(43) |
Jul
(37) |
Aug
(3) |
Sep
(6) |
Oct
(26) |
Nov
(17) |
Dec
(29) |
| 2011 |
Jan
(28) |
Feb
(18) |
Mar
(42) |
Apr
(18) |
May
(13) |
Jun
(32) |
Jul
(32) |
Aug
(25) |
Sep
(46) |
Oct
(41) |
Nov
(36) |
Dec
(43) |
| 2012 |
Jan
(92) |
Feb
(120) |
Mar
(40) |
Apr
(75) |
May
(40) |
Jun
(93) |
Jul
(115) |
Aug
(67) |
Sep
(38) |
Oct
(92) |
Nov
(95) |
Dec
(47) |
| 2013 |
Jan
(171) |
Feb
(200) |
Mar
(100) |
Apr
(134) |
May
(112) |
Jun
(142) |
Jul
(123) |
Aug
(66) |
Sep
(175) |
Oct
(236) |
Nov
(141) |
Dec
(98) |
| 2014 |
Jan
(91) |
Feb
(88) |
Mar
(126) |
Apr
(63) |
May
(123) |
Jun
(122) |
Jul
(105) |
Aug
(83) |
Sep
(114) |
Oct
(90) |
Nov
(181) |
Dec
(85) |
| 2015 |
Jan
(111) |
Feb
(120) |
Mar
(161) |
Apr
(95) |
May
(93) |
Jun
(185) |
Jul
(170) |
Aug
(119) |
Sep
(128) |
Oct
(110) |
Nov
(145) |
Dec
(92) |
| 2016 |
Jan
(105) |
Feb
(106) |
Mar
(101) |
Apr
(59) |
May
(96) |
Jun
(168) |
Jul
(110) |
Aug
(183) |
Sep
(85) |
Oct
(79) |
Nov
(87) |
Dec
(86) |
| 2017 |
Jan
(100) |
Feb
(77) |
Mar
(85) |
Apr
(52) |
May
(60) |
Jun
(63) |
Jul
(67) |
Aug
(24) |
Sep
(1) |
Oct
|
Nov
(2) |
Dec
|
|
From: Chris M. <cma...@um...> - 2012-01-30 06:51:53
|
Hello all, I am unable to dump png's from pgstar due to issues with the library version: libpng warning: Application built with libpng-1.2.10 but running with 1.5.6 PGPLOT /png: error in libpng while writing file png/main00001.png, plotting disabled The result is that the 'png' folder is full of empty files. Is it truly a problem to have the more recent version? If so, how can I tell pgplot to ignore the warning from libpng? Thanks, Chris |
|
From: Kent G. B. <kg...@kg...> - 2012-01-30 02:38:13
|
A new release of MESA++, release 115, is now available. This is built on MESA release 3851. The new release resynchronizes MESA++ with MESA. There is no particular new capability at this time, though I have some good things planned to release in the near future. --Kent G. Budge |
|
From: Richard T. <tow...@as...> - 2012-01-29 14:47:36
|
You need a C shell installed to build adipls --- either csh or tcsh. cheers, Rich On Jan 29, 2012, at 5:32 AM, Prof M. N. Anandaram wrote: > I managed to get zlib from www.zlib.net/zlib-1.2.5.tar.gz and from it > import libz.so into /usr/lib. > Now the ./install fails at the end of mesa/adipls stage > as the last part extract indicates below: > > ------------------------------------------------------------------- > gfortran -c -o ../gensr/strcompr.o ../gensr/strcompr.f > make[2]: `../gensr/blstio.o' is up to date. > make[2]: Leaving directory `/home/clawuser/mesa/adipls/adipack.c/gensr' > make[1]: Leaving directory `/home/clawuser/mesa/adipls/adipack.c/adipls' > ./ck: /home/clawuser/mesa/adipls/test/../adipack.c/bin/fgong-amdl.d: /bin/csh: bad > interpreter: No such file or directory > FAILED > > /home/clawuser/mesa/adipls/test > TEST FAILED -- compare obs.txt to obs.test.txt > > /home/clawuser/mesa/adipls > ./build_and_test FAILED > -------------------------------------------------------------------- > When I checked the fgong-amd.d it seemed to require two command line args. > Is this install otherwise a success? > Any way what shd I do to bypass /adipls as my interest now is in solar zams model? > Thanking you, > Anandaram > > From: Richard Townsend <tow...@as...> > Since this isn't MESA-specific, I suggest you put your question to one of the many Ubuntu support groups. > |
|
From: Prof M. N. A. <ana...@ya...> - 2012-01-29 11:32:24
|
I managed to get zlib from www.zlib.net/zlib-1.2.5.tar.gz and from it import libz.so into /usr/lib. Now the ./install fails at the end of mesa/adipls stage as the last part extract indicates below: ------------------------------------------------------------------- gfortran -c -o ../gensr/strcompr.o ../gensr/strcompr.f make[2]: `../gensr/blstio.o' is up to date. make[2]: Leaving directory `/home/clawuser/mesa/adipls/adipack.c/gensr' make[1]: Leaving directory `/home/clawuser/mesa/adipls/adipack.c/adipls' ./ck: /home/clawuser/mesa/adipls/test/../adipack.c/bin/fgong-amdl.d: /bin/csh: bad interpreter: No such file or directory FAILED /home/clawuser/mesa/adipls/test TEST FAILED -- compare obs.txt to obs.test.txt /home/clawuser/mesa/adipls ./build_and_test FAILED -------------------------------------------------------------------- When I checked the fgong-amd.d it seemed to require two command line args. Is this install otherwise a success? Any way what shd I do to bypass /adipls as my interest now is in solar zams model? Thanking you, Anandaram From: Richard Townsend <tow...@as...> Since this isn't MESA-specific, I suggest you put your question to one of the many Ubuntu support groups. |
|
From: Francis T. <fx...@ma...> - 2012-01-28 19:08:32
|
final reminder for applications. fxt On Jan 13, 2012, at 7:31 AM, Francis Timmes wrote: > Dear MESA community, > > The 2012 MESA Summer School is now accepting applications: > > http://cococubed.asu.edu/mesa_school_website > > This 2012 MESA Summer School is aimed at graduate students and > postdoctoral researchers who are interested in using, developing, > and sharing their research experiences with MESA. Interested faculty > should contact one of the School Directors. Themes for the 2012 > MESA Summer School include pulsation, rotation, and astroseismology. > > Enrollment will be limited to no more than 44 participants. > Applications close February 1, 2012, so apply now! > > The School Directors > |
|
From: Bill P. <pa...@ki...> - 2012-01-28 16:58:38
|
Hi,
Did you ever want to stop a run at a specific value for something?
Such as at Teff = 3000, for example?
Assuming the Teff values are dropping, you can set
Teff_lower_limit = 3000
that will make the run terminate as soon as Teff drops below 3000,
but if the timesteps are large, the 1st value below 3000 can be
pretty far below -- too far if what you really want is Teff = 3000,
not just Teff <= 3000.
You could fiddle around setting timestep limits by hand and doing
a series of restarts until you get something close enough, but
better yet, you can set a couple of controls to get the system to do that
for you automatically!
Here's a case I ran recently of a cooling WD. With the default controls,
it jumped from Teff = 3036 to Teff = 2934 and stopped there.
Then I added these to the &controls inlist
when_to_stop_rtol = 1d-3
when_to_stop_atol = 1d-3
Now it knows how close I want to get when it stops.
So when it overshoots the target, it backups and
repeats from before the target with a smaller timestep.
In this case, it needed two backups: the first gave
Teff = 2992, which was close but but quite within
the tolerances. The second backup gave Teff = 2999,
and that was accepted.
Of course this isn't just for Teff --- the "when_to_stop" tolerances
apply to (just about) all of the stopping criteria that use limits,
such as abundances or luminosities or ...
Give it a try next time you need to stop on a dime!
Cheers,
Bill
|
|
From: Ehsan M. <mor...@ia...> - 2012-01-27 20:33:59
|
Hi all, I tried to install and run Tioga on my MacBook, but the outcome was not really promising. I tried running Tioga in the terminal twice, and in both times, my system hanged! So, I had to do a manual restart. >From then, I gave up, and stick to my own IDL routines. As Bill said once, Tioga is no longer maintained. Best regards. Ehsan. > Exactly, > > The output seems fine but when I look in the profiles_out folder there is > nothing. I have the same problem when I use star history instead of star > profile. > > I have a student with a mac laptop. We will install MESA there and try to > see if we can use TIOGA. Maybe this is a problem with LINUX. > > Thanks, > Maurizio > > From: Matt Coleman [mailto:mco...@ph...] > Sent: Friday, January 27, 2012 3:07 PM > To: Giannotti, Maurizio > Cc: Bill Paxton; mes...@li... > Subject: Re: [mesa-users] Problems with TIOGA > > Hi Maurizio, Bill, and Mesa users, > > Was the tioga problem of producing reasonable terminal output but no plots > ever fixed? I believe I have the exact same problem. > > Thanks, > On Wed, Jan 25, 2012 at 10:45 AM, Giannotti, Maurizio > <MGi...@ma...<mailto:MGi...@ma...>> wrote: > Hello Bill, > > Thanks for your prompt response. > > I did as you said. I copied your files (log42.data and profiles.index) in > my LOGS folder, and I ran the command. This is the output that I get: > > mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ tioga by_mass -m 0 > loading /home/mesa2/Desktop/projects/multi_work/star_profile/by_mass.rb > log_mass_frac_ymin -6 > write FYI track info > xs.length 1040 > xs[0] 2.98962080547118 > xs[-1] 1.17545985800201e-07 > @xmin > @xmax > @grid_min 0 > @grid_max -1 > xs[@grid_min] 2.98962080547118 > xs[@grid_max] 1.17545985800201e-07 > show_by @xaxis_by mass name abundances > no frills false > eval_str = abundances(xs, xlabel) > 0 > /home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf > mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ > > The output is very similar to what you get, except for the line > Abundances_figure.pdf > > just after eval_str = abundances(xs, xlabel) > > However, the folder profile_out is empty. If I try to see the output file > that is what I get: > > home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf > bash: > home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf: > No such file or directory > > > Notice that I have UBUNTU and not the latest version of MESA (I still have > the version installed around last September). > > I am pretty confused about what is going on. Do you think I should try to > install the latest version of MESA, reinstall TIOGA, and try again? > > Thank you very much for you help. > > Maurizio > > > > From: Bill Paxton > [mailto:pa...@ki...<mailto:pa...@ki...>] > Sent: Tuesday, January 24, 2012 10:16 PM > To: Giannotti, Maurizio > Cc: > mes...@li...<mailto:mes...@li...> > Subject: Re: [mesa-users] Problems with TIOGA > > Hi Maurizio, > > I just checked on my machine. I did a run in the work directory so that > there were files in LOGS. > Then I did cd star_profile and ran tioga using the same command you did. > I got the following terminal output and also found the following new file > in profiles_out. > > /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0 > loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb > log_mass_frac_ymin -6 > xs.length 1040 > xs[0] 2.98962080547118 > xs[-1] 1.17545985800201e-07 > @xmin > @xmax > @grid_min 0 > @grid_max -1 > xs[@grid_min] 2.98962080547118 > xs[@grid_max] 1.17545985800201e-07 > show_by @xaxis_by mass name abundances > no frills false > eval_str = abundances(xs, xlabel) > Abundances_figure.pdf > 0 > /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf > > > Do you get similar terminal output to this? > > Try putting these files in your work/LOGS. Then you'll have the same data > for plotting as I do. > > You should then get the same pdf output. Do you get anything? > > -Bill > > > > > On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote: > > I have been using MESA for a while, and lately I have tried to install > Tioga. Everything seems to go well. I can run the examples in the tioga > folder, see the pdf of the Tioga icon, and also the blue and the red > figures. However, when I try to make a plot from the Mesa/work folder, > Tioga does not produce any output. For example, if I go in the > star_profile folder and run > > tioga by_mass -m 0 > > it does make the folder profiles_out, and I get a message that indicates > the production of the file Abundances.pdf. However the file is not there. > No error message. I have had this problem for several weeks, and no matter > what I do, I cannot produce the pdf files. > > > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > mesa-users mailing list > mes...@li...<mailto:mes...@li...> > https://lists.sourceforge.net/lists/listinfo/mesa-users > > > > -- > - Matt > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > > ------------------------------------------------------------------------------ > Try before you buy = See our experts in action! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-dev2_______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. |
|
From: Giannotti, M. <MGi...@ma...> - 2012-01-27 20:12:40
|
Exactly, The output seems fine but when I look in the profiles_out folder there is nothing. I have the same problem when I use star history instead of star profile. I have a student with a mac laptop. We will install MESA there and try to see if we can use TIOGA. Maybe this is a problem with LINUX. Thanks, Maurizio From: Matt Coleman [mailto:mco...@ph...] Sent: Friday, January 27, 2012 3:07 PM To: Giannotti, Maurizio Cc: Bill Paxton; mes...@li... Subject: Re: [mesa-users] Problems with TIOGA Hi Maurizio, Bill, and Mesa users, Was the tioga problem of producing reasonable terminal output but no plots ever fixed? I believe I have the exact same problem. Thanks, On Wed, Jan 25, 2012 at 10:45 AM, Giannotti, Maurizio <MGi...@ma...<mailto:MGi...@ma...>> wrote: Hello Bill, Thanks for your prompt response. I did as you said. I copied your files (log42.data and profiles.index) in my LOGS folder, and I ran the command. This is the output that I get: mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ tioga by_mass -m 0 loading /home/mesa2/Desktop/projects/multi_work/star_profile/by_mass.rb log_mass_frac_ymin -6 write FYI track info xs.length 1040 xs[0] 2.98962080547118 xs[-1] 1.17545985800201e-07 @xmin @xmax @grid_min 0 @grid_max -1 xs[@grid_min] 2.98962080547118 xs[@grid_max] 1.17545985800201e-07 show_by @xaxis_by mass name abundances no frills false eval_str = abundances(xs, xlabel) 0 /home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ The output is very similar to what you get, except for the line Abundances_figure.pdf just after eval_str = abundances(xs, xlabel) However, the folder profile_out is empty. If I try to see the output file that is what I get: home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf bash: home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf: No such file or directory Notice that I have UBUNTU and not the latest version of MESA (I still have the version installed around last September). I am pretty confused about what is going on. Do you think I should try to install the latest version of MESA, reinstall TIOGA, and try again? Thank you very much for you help. Maurizio From: Bill Paxton [mailto:pa...@ki...<mailto:pa...@ki...>] Sent: Tuesday, January 24, 2012 10:16 PM To: Giannotti, Maurizio Cc: mes...@li...<mailto:mes...@li...> Subject: Re: [mesa-users] Problems with TIOGA Hi Maurizio, I just checked on my machine. I did a run in the work directory so that there were files in LOGS. Then I did cd star_profile and ran tioga using the same command you did. I got the following terminal output and also found the following new file in profiles_out. /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0 loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb log_mass_frac_ymin -6 xs.length 1040 xs[0] 2.98962080547118 xs[-1] 1.17545985800201e-07 @xmin @xmax @grid_min 0 @grid_max -1 xs[@grid_min] 2.98962080547118 xs[@grid_max] 1.17545985800201e-07 show_by @xaxis_by mass name abundances no frills false eval_str = abundances(xs, xlabel) Abundances_figure.pdf 0 /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf Do you get similar terminal output to this? Try putting these files in your work/LOGS. Then you'll have the same data for plotting as I do. You should then get the same pdf output. Do you get anything? -Bill On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote: I have been using MESA for a while, and lately I have tried to install Tioga. Everything seems to go well. I can run the examples in the tioga folder, see the pdf of the Tioga icon, and also the blue and the red figures. However, when I try to make a plot from the Mesa/work folder, Tioga does not produce any output. For example, if I go in the star_profile folder and run tioga by_mass -m 0 it does make the folder profiles_out, and I get a message that indicates the production of the file Abundances.pdf. However the file is not there. No error message. I have had this problem for several weeks, and no matter what I do, I cannot produce the pdf files. ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ mesa-users mailing list mes...@li...<mailto:mes...@li...> https://lists.sourceforge.net/lists/listinfo/mesa-users -- - Matt |
|
From: Matt C. <mco...@ph...> - 2012-01-27 20:07:33
|
Hi Maurizio, Bill, and Mesa users, Was the tioga problem of producing reasonable terminal output but no plots ever fixed? I believe I have the exact same problem. Thanks, On Wed, Jan 25, 2012 at 10:45 AM, Giannotti, Maurizio < MGi...@ma...> wrote: > Hello Bill,**** > > ** ** > > Thanks for your prompt response.**** > > ** ** > > I did as you said. I copied your files (log42.data and profiles.index) in > my LOGS folder, and I ran the command. This is the output that I get:**** > > ** ** > > mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ tioga by_mass -m 0 > **** > > loading /home/mesa2/Desktop/projects/multi_work/star_profile/by_mass.rb*** > * > > log_mass_frac_ymin -6**** > > write FYI track info**** > > xs.length 1040**** > > xs[0] 2.98962080547118**** > > xs[-1] 1.17545985800201e-07**** > > @xmin **** > > @xmax **** > > @grid_min 0**** > > @grid_max -1**** > > xs[@grid_min] 2.98962080547118**** > > xs[@grid_max] 1.17545985800201e-07**** > > show_by @xaxis_by mass name abundances**** > > no frills false**** > > eval_str = abundances(xs, xlabel)**** > > 0 > /home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf > **** > > mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ **** > > ** ** > > The output is very similar to what you get, except for the line **** > > Abundances_figure.pdf**** > > ** ** > > just after eval_str = abundances(xs, xlabel)**** > > ** ** > > However, the folder profile_out is empty. If I try to see the output file > that is what I get:**** > > ** ** > > > home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf > **** > > bash: > home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf: > No such file or directory**** > > ** ** > > ** ** > > Notice that I have UBUNTU and not the latest version of MESA (I still have > the version installed around last September). **** > > ** ** > > I am pretty confused about what is going on. Do you think I should try to > install the latest version of MESA, reinstall TIOGA, and try again?**** > > ** ** > > Thank you very much for you help.**** > > ** ** > > Maurizio**** > > ** ** > > ** ** > > ** ** > > *From:* Bill Paxton [mailto:pa...@ki...] > *Sent:* Tuesday, January 24, 2012 10:16 PM > *To:* Giannotti, Maurizio > *Cc:* mes...@li... > *Subject:* Re: [mesa-users] Problems with TIOGA**** > > ** ** > > Hi Maurizio, **** > > ** ** > > I just checked on my machine. I did a run in the work directory so that > there were files in LOGS.**** > > Then I did cd star_profile and ran tioga using the same command you did.** > ** > > I got the following terminal output and also found the following new file > in profiles_out.**** > > ** ** > > /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0**** > > loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb**** > > log_mass_frac_ymin -6**** > > xs.length 1040**** > > xs[0] 2.98962080547118**** > > xs[-1] 1.17545985800201e-07**** > > @xmin **** > > @xmax **** > > @grid_min 0**** > > @grid_max -1**** > > xs[@grid_min] 2.98962080547118**** > > xs[@grid_max] 1.17545985800201e-07**** > > show_by @xaxis_by mass name abundances**** > > no frills false**** > > eval_str = abundances(xs, xlabel)**** > > Abundances_figure.pdf**** > > 0 /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf > **** > > ** ** > > ** ** > > Do you get similar terminal output to this?**** > > ** ** > > Try putting these files in your work/LOGS. Then you'll have the same data > for plotting as I do.**** > > ** ** > > You should then get the same pdf output. Do you get anything?**** > > ** ** > > -Bill**** > > ** ** > > ** ** > > ** ** > > ** ** > > On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote:**** > > > > **** > > I have been using MESA for a while, and lately I have tried to install > Tioga. Everything seems to go well. I can run the examples in the tioga > folder, see the pdf of the Tioga icon, and also the blue and the red > figures. However, when I try to make a plot from the Mesa/work folder, > Tioga does not produce any output. For example, if I go in the star_profile > folder and run > > tioga by_mass -m 0**** > > > it does make the folder profiles_out, and I get a message that indicates > the production of the file Abundances.pdf. However the file is not there. > No error message. I have had this problem for several weeks, and no matter > what I do, I cannot produce the pdf files. **** > > ** ** > > > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users > > -- - Matt |
|
From: Bill P. <pa...@ki...> - 2012-01-27 19:57:44
|
Hi Ale, On Jan 27, 2012, at 11:34 AM, Alessandro Patruno wrote: > Hi all, > > I have evolved several stellar models with MESA and I am trying to calculate the UBVR colors of the stars. > I see there is a module called "colors" that should in principle be able to do the job. > > However, I can't understand how to implement it. I've compiled and run the "colors" module test and it works, > what am I supposed to do next ? > I have my .log files of my stellar models already evolved and stored. > Would be possible for the "colors" module > to take those output .log files and create the UBVR colors for each star model I evolved ? > Or do I have to re-run all the simulations by specifying somewhere that MESA has to calculate the colors during the run ? > If so, where do I have to specify this ? The colors module will do one model at a time -- it is your job to call it with the right arguments and do something with the results. You have a choice: you can write a routine to read the star log and extract the necessary args for calling colors, or you can rerun with a modified run_star_extras routine that calls colors between steps and saves the results. Since the args for colors are just Teff, L, M, and [Fe/H], you'll probably have what you need in your star.log files. If you decide to do it by reading the log, you'll need to call colors_init at the start. Hope that helps! Cheers, Bill |
|
From: Alessandro P. <ale...@gm...> - 2012-01-27 19:34:54
|
Hi all, I have evolved several stellar models with MESA and I am trying to calculate the UBVR colors of the stars. I see there is a module called "colors" that should in principle be able to do the job. However, I can't understand how to implement it. I've compiled and run the "colors" module test and it works, what am I supposed to do next ? I have my .log files of my stellar models already evolved and stored. Would be possible for the "colors" module to take those output .log files and create the UBVR colors for each star model I evolved ? Or do I have to re-run all the simulations by specifying somewhere that MESA has to calculate the colors during the run ? If so, where do I have to specify this ? Many thanks ! Best, Ale |
|
From: Richard T. <tow...@as...> - 2012-01-27 15:08:17
|
One thing I should add: LIBRARY_PATH should point to a *directory*, and not to a file. You need to find the *directory* where both libz.so.* and libX11.so.* reside. On Jan 27, 2012, at 8:17 AM, Richard Townsend wrote: > -lz instructs the compiler to look for libz.so. So, that's what you need to find next. > > On Jan 27, 2012, at 5:54 AM, Prof M. N. Anandaram wrote: > >> Yes. I found the file as libX11.so.6.2.0 which I recopied omitting '.6.2.0' >> and entered it as LIBRARY_PATH=/usr/lib/libX11.so and ran clean install again. >> Now also it failed but asked for another file again at the endpoint: >> ---------------------------------------------------- >> /usr/bin/ld: cannot find -lz >> collect2: error: ld returned 1 exit status >> make: *** [star] Error 1 >> FAILED/home/clawuser/mesa/star/test >> FAILED >> /home/clawuser/mesa/star >> ./build_and_test FAILED >> ----------------------------------------------- >> I checked that this binary file was there and so with LIBRARY_PATH=/usr/bin/ld >> I ran install again. But the result was the same. So what is this -lz? >> As i did not find it what next? >> >> Anandaram >> >> >> From: Richard Townsend <tow...@as...> >> To: Prof M. N. Anandaram <ana...@ya...> >> Cc: "mes...@li..." <mes...@li...> >> Sent: Thursday, January 26, 2012 9:26 PM >> Subject: Re: [mesa-users] mesa install in linux VM fails at the very end stage ! >> >> Can you find where the libX11.so file resides? >> >> On Jan 26, 2012, at 9:52 AM, Prof M. N. Anandaram wrote: >> >>> Hi all: >>> I am using an Ubuntu 9.04 based Linux Virtual Machine hosted by Virtual Box in Windows-7 OS. >>> As per latest instructions mesasdk is stored in /opt folder and mesa svn#3851 in home directory. >>> After the three bash commands $export ME...; $source $Me...; and $ export OMP-NUM_THREADS=2, >>> I entered LIBRARY_PATH=/usr/bin/X11 since my VM does not apperantly have x86_64-linux-gnu. >>> Then I do $ cd mesa and then >>> [mesa]$ ./clean;./install >>> Things seem to go smoothly except the last stage where >>> it asks for lX11 and stops as you can see here: >>> >>> ---------------------------------------------------- >>> run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - >>> lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` >>> /usr/bin/ld: cannot find -lX11 >>> collect2: error: ld returned 1 exit status >>> make: *** [star] Error 1 >> > > > ------------------------------------------------------------------------------ > Try before you buy = See our experts in action! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-dev2 > _______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Richard T. <tow...@as...> - 2012-01-27 14:17:34
|
-lz instructs the compiler to look for libz.so. So, that's what you need to find next. On Jan 27, 2012, at 5:54 AM, Prof M. N. Anandaram wrote: > Yes. I found the file as libX11.so.6.2.0 which I recopied omitting '.6.2.0' > and entered it as LIBRARY_PATH=/usr/lib/libX11.so and ran clean install again. > Now also it failed but asked for another file again at the endpoint: > ---------------------------------------------------- > /usr/bin/ld: cannot find -lz > collect2: error: ld returned 1 exit status > make: *** [star] Error 1 > FAILED/home/clawuser/mesa/star/test > FAILED > /home/clawuser/mesa/star > ./build_and_test FAILED > ----------------------------------------------- > I checked that this binary file was there and so with LIBRARY_PATH=/usr/bin/ld > I ran install again. But the result was the same. So what is this -lz? > As i did not find it what next? > > Anandaram > > > From: Richard Townsend <tow...@as...> > To: Prof M. N. Anandaram <ana...@ya...> > Cc: "mes...@li..." <mes...@li...> > Sent: Thursday, January 26, 2012 9:26 PM > Subject: Re: [mesa-users] mesa install in linux VM fails at the very end stage ! > > Can you find where the libX11.so file resides? > > On Jan 26, 2012, at 9:52 AM, Prof M. N. Anandaram wrote: > > > Hi all: > > I am using an Ubuntu 9.04 based Linux Virtual Machine hosted by Virtual Box in Windows-7 OS. > > As per latest instructions mesasdk is stored in /opt folder and mesa svn#3851 in home directory. > > After the three bash commands $export ME...; $source $Me...; and $ export OMP-NUM_THREADS=2, > > I entered LIBRARY_PATH=/usr/bin/X11 since my VM does not apperantly have x86_64-linux-gnu. > > Then I do $ cd mesa and then > > [mesa]$ ./clean;./install > > Things seem to go smoothly except the last stage where > > it asks for lX11 and stops as you can see here: > > > > ---------------------------------------------------- > > run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - > > lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` > > /usr/bin/ld: cannot find -lX11 > > collect2: error: ld returned 1 exit status > > make: *** [star] Error 1 > |
|
From: Prof M. N. A. <ana...@ya...> - 2012-01-27 11:54:32
|
Yes. I found the file as libX11.so.6.2.0 which I recopied omitting '.6.2.0' and entered it as LIBRARY_PATH=/usr/lib/libX11.so and ran clean install again. Now also it failed but asked for another file again at the endpoint: ---------------------------------------------------- /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status make: *** [star] Error 1 FAILED/home/clawuser/mesa/star/test FAILED /home/clawuser/mesa/star ./build_and_test FAILED ----------------------------------------------- I checked that this binary file was there and so with LIBRARY_PATH=/usr/bin/ld I ran install again. But the result was the same. So what is this -lz? As i did not find it what next? Anandaram From: Richard Townsend <tow...@as...> To: Prof M. N. Anandaram <ana...@ya...> Cc: "mes...@li..." <mes...@li...> Sent: Thursday, January 26, 2012 9:26 PM Subject: Re: [mesa-users] mesa install in linux VM fails at the very end stage ! Can you find where the libX11.so file resides? On Jan 26, 2012, at 9:52 AM, Prof M. N. Anandaram wrote: > Hi all: > I am using an Ubuntu 9.04 based Linux Virtual Machine hosted by Virtual Box in Windows-7 OS. > As per latest instructions mesasdk is stored in /opt folder and mesa svn#3851 in home directory. > After the three bash commands $export ME...; $source $Me...; and $ export OMP-NUM_THREADS=2, > I entered LIBRARY_PATH=/usr/bin/X11 since my VM does not apperantly have x86_64-linux-gnu. > Then I do $ cd mesa and then > [mesa]$ ./clean;./install > Things seem to go smoothly except the last stage where > it asks for lX11 and stops as you can see here: > > ---------------------------------------------------- > run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - > lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` > /usr/bin/ld: cannot find -lX11 > collect2: error: ld returned 1 exit status > make: *** [star] Error 1 |
|
From: Richard T. <tow...@as...> - 2012-01-26 15:56:38
|
Can you find where the libX11.so file resides? On Jan 26, 2012, at 9:52 AM, Prof M. N. Anandaram wrote: > Hi all: > I am using an Ubuntu 9.04 based Linux Virtual Machine hosted by Virtual Box in Windows-7 OS. > As per latest instructions mesasdk is stored in /opt folder and mesa svn#3851 in home directory. > After the three bash commands $export ME...; $source $Me...; and $ export OMP-NUM_THREADS=2, > I entered LIBRARY_PATH=/usr/bin/X11 since my VM does not apperantly have x86_64-linux-gnu. > Then I do $ cd mesa and then > [mesa]$ ./clean;./install > Things seem to go smoothly except the last stage where > it asks for lX11 and stops as you can see here: > > ---------------------------------------------------- > run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - > lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` > /usr/bin/ld: cannot find -lX11 > collect2: error: ld returned 1 exit status > make: *** [star] Error 1 > FAILED > > /home/clawuser/mesa/star/test > FAILED > > /home/clawuser/mesa/star > ./build_and_test FAILED > [mesa] $ > ------------------------------------------------------------------------ > I have verified that /usr/bin/X11 exists in my system. So what is the work around solution now? > Can I omit the pgplot part which seems to need X11 and get text output which I can plot later? If this is possible what change is needed in makefile_header? > > Thanking you > Anandaram [ana...@ya...] > > > ===============================bottom part of output=================================================== > mesa/diffusion has been made, tested, and exported. > ************************************************ > /home/clawuser/mesa/atm > building atm package. > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../public/atm_def.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/integrate_atm.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/table_atm.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/mod_atm.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../public/atm_lib.f > ar crs libatm.a integrate_atm.o table_atm.o mod_atm.o atm_lib.o > make: `libatm.a' is up to date. > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm_support.f > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm.f > gfortran -fopenmp -o ../tester test_atm_support.o test_atm.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm_quietly.f > gfortran -fopenmp -o ../test_quietly test_atm_support.o test_atm_quietly.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/plot_atm.f > gfortran -fopenmp -o ../plotter test_atm_support.o plot_atm.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` > export > done > mesa/atm has been made, tested, and exported. > ************************************************ > /home/clawuser/mesa/sample > building sample package. > gfortran -fno-range-check -ffree-form -I../../include -c ../src/sample.f > gfortran -fopenmp -o ../test sample.o \ > -L../../lib -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` > done > mesa/sample has been made, tested, and exported. > ************************************************ > /home/clawuser/mesa/star > building star package. > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/star_def.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/star_private_def.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mixing.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_wind.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_energy.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_energy_implicit.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_cgrav.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mlt.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_atm.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_diffusion.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_eos.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_kap.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_pgstar_plots.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mesh_functions.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/star_utils.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/ctrls_io.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/alloc.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/model_in.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/model_out.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/opacities.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/micro.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include -x f95-cpp-input -Dgfortran ../private/solve_mix.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_burn.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/brunt.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/overshoot.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/turbulent_diffusion.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mlt_info.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/rotation_mix_info.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mix_smoothing.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mix_info.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_burn_mix.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_functions.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_plan.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_adjust.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/create_atm.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_gr_factors.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_rotation.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_vars.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_eqns.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_mtx.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_newton.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -ffree-form -c -O ../private/report.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/log.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pulsation_info.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/profile_getval.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -ffree-form -c -O ../private/profile.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/do_one_utils.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/timestep.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_xyz.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mass.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh_support.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh_plot.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/element_diffusion.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/evolve_support.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_hydro.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/struct_burn_mix.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/winds.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/evolve.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/relax.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pre_ms_model.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/read_model.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/write_model.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/init_model.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/init.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_ctrls_io.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_support.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_conv.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_hr.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_trho.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_cntr_hist.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_surf_hist.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_trho_profile.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_profile.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mode_prop.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_power.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abundance.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_power.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_logg_Teff.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_hr_trho.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_summary.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_dynamo.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mixing_Ds.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mixing_dynamo.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_pwr_dmix.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_pwr_dmix_dyn.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/star_lib.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/se_support.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/run_star_support.f > gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/sample_pgstar_plot.f > ar crs libstar.a star_def.o star_private_def.o other_mixing.o other_wind.o other_energy.o other_energy_implicit.o other_cgrav.o other_mlt.o other_atm.o other_diffusion.o other_eos.o other_kap.o other_pgstar_plots.o other_mesh_functions.o star_utils.o ctrls_io.o alloc.o model_in.o model_out.o opacities.o micro.o solve_mix.o solve_burn.o brunt.o overshoot.o turbulent_diffusion.o mlt_info.o rotation_mix_info.o mix_smoothing.o mix_info.o solve_burn_mix.o mesh_functions.o mesh_plan.o mesh_adjust.o create_atm.o hydro_gr_factors.o hydro_rotation.o hydro_vars.o hydro_eqns.o hydro_mtx.o hydro_newton.o report.o log.o pulsation_info.o profile_getval.o profile.o do_one_utils.o timestep.o adjust_xyz.o adjust_mass.o adjust_mesh_support.o adjust_mesh_plot.o adjust_mesh.o element_diffusion.o evolve_support.o solve_hydro.o struct_burn_mix.o winds.o evolve.o relax.o pre_ms_model.o read_model.o write_model.o init_model.o init.o pgstar_ctrls_io.o pgstar_support.o pgstar_conv.o pgstar_hr.o pgstar_trho.o pgstar_cntr_hist.o pgstar_surf_hist.o pgstar_trho_profile.o pgstar_profile.o pgstar_mode_prop.o pgstar_power.o pgstar_abundance.o pgstar_abund_power.o pgstar_logg_Teff.o pgstar_hr_trho.o pgstar_summary.o pgstar_dynamo.o pgstar_mixing_Ds.o pgstar_mixing_dynamo.o pgstar_abund_pwr_dmix.o pgstar_abund_pwr_dmix_dyn.o pgstar.o star_lib.o se_support.o run_star_support.o sample_pgstar_plot.o > make: `libstar.a' is up to date. > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run_star_extras.f > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run_star.f > gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run.f > gfortran -fno-range-check -fopenmp -o ../star \ > run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - > lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` > /usr/bin/ld: cannot find -lX11 > collect2: error: ld returned 1 exit status > make: *** [star] Error 1 > FAILED > > /home/clawuser/mesa/star/test > FAILED > > /home/clawuser/mesa/star > ./build_and_test FAILED > > [mesa] $ > ======================================end of output======================================= > ------------------------------------------------------------------------------ > Keep Your Developer Skills Current with LearnDevNow! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-d2d_______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Prof M. N. A. <ana...@ya...> - 2012-01-26 15:52:49
|
Hi all: I am using an Ubuntu 9.04 based Linux Virtual Machine hosted by Virtual Box in Windows-7 OS. As per latest instructions mesasdk is stored in /opt folder and mesa svn#3851 in home directory. After the three bash commands $export ME...; $source $Me...; and $ export OMP-NUM_THREADS=2, I entered LIBRARY_PATH=/usr/bin/X11 since my VM does not apperantly have x86_64-linux-gnu. Then I do $ cd mesa and then [mesa]$ ./clean;./install Things seem to go smoothly except the last stage where it asks for lX11 and stops as you can see here: ---------------------------------------------------- run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status make: *** [star] Error 1 FAILED /home/clawuser/mesa/star/test FAILED /home/clawuser/mesa/star ./build_and_test FAILED [mesa] $ ------------------------------------------------------------------------ I have verified that /usr/bin/X11 exists in my system. So what is the work around solution now? Can I omit the pgplot part which seems to need X11 and get text output which I can plot later? If this is possible what change is needed in makefile_header? Thanking you Anandaram [ana...@ya...] ===============================bottom part of output=================================================== mesa/diffusion has been made, tested, and exported. ************************************************ /home/clawuser/mesa/atm building atm package. gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../public/atm_def.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/integrate_atm.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/table_atm.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../private/mod_atm.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -O2 -c -ffree-form ../public/atm_lib.f ar crs libatm.a integrate_atm.o table_atm.o mod_atm.o atm_lib.o make: `libatm.a' is up to date. gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm_support.f gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm.f gfortran -fopenmp -o ../tester test_atm_support.o test_atm.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/test_atm_quietly.f gfortran -fopenmp -o ../test_quietly test_atm_support.o test_atm_quietly.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -O2 -ffree-form ../src/plot_atm.f gfortran -fopenmp -o ../plotter test_atm_support.o plot_atm.o -L../../make -latm -L../../../lib -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` export done mesa/atm has been made, tested, and exported. ************************************************ /home/clawuser/mesa/sample building sample package. gfortran -fno-range-check -ffree-form -I../../include -c ../src/sample.f gfortran -fopenmp -o ../test sample.o \ -L../../lib -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert -lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` done mesa/sample has been made, tested, and exported. ************************************************ /home/clawuser/mesa/star building star package. gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/star_def.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/star_private_def.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mixing.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_wind.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_energy.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_energy_implicit.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_cgrav.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mlt.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_atm.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_diffusion.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_eos.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_kap.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_pgstar_plots.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/other_mesh_functions.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/star_utils.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/ctrls_io.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/alloc.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/model_in.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/model_out.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/opacities.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/micro.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include -x f95-cpp-input -Dgfortran ../private/solve_mix.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_burn.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/brunt.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/overshoot.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/turbulent_diffusion.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mlt_info.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/rotation_mix_info.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mix_smoothing.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mix_info.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_burn_mix.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_functions.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_plan.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/mesh_adjust.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/create_atm.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_gr_factors.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_rotation.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_vars.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_eqns.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_mtx.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/hydro_newton.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -ffree-form -c -O ../private/report.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/log.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pulsation_info.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/profile_getval.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -ffree-form -c -O ../private/profile.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/do_one_utils.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/timestep.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_xyz.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mass.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh_support.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh_plot.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/adjust_mesh.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/element_diffusion.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/evolve_support.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/solve_hydro.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/struct_burn_mix.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/winds.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/evolve.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/relax.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pre_ms_model.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/read_model.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/write_model.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/init_model.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/init.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_ctrls_io.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_support.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_conv.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_hr.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_trho.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_cntr_hist.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_surf_hist.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_trho_profile.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_profile.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mode_prop.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_power.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abundance.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_power.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_logg_Teff.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_hr_trho.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_summary.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_dynamo.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mixing_Ds.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_mixing_dynamo.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_pwr_dmix.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar_abund_pwr_dmix_dyn.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../private/pgstar.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/star_lib.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/se_support.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/run_star_support.f gfortran -fno-range-check -fopenmp -I../public -I../private -I../../include -Wunused-value -Werror -W -fimplicit-none -fbounds-check -O2 -g -c -ffree-form -I/opt/mesasdk/include ../public/sample_pgstar_plot.f ar crs libstar.a star_def.o star_private_def.o other_mixing.o other_wind.o other_energy.o other_energy_implicit.o other_cgrav.o other_mlt.o other_atm.o other_diffusion.o other_eos.o other_kap.o other_pgstar_plots.o other_mesh_functions.o star_utils.o ctrls_io.o alloc.o model_in.o model_out.o opacities.o micro.o solve_mix.o solve_burn.o brunt.o overshoot.o turbulent_diffusion.o mlt_info.o rotation_mix_info.o mix_smoothing.o mix_info.o solve_burn_mix.o mesh_functions.o mesh_plan.o mesh_adjust.o create_atm.o hydro_gr_factors.o hydro_rotation.o hydro_vars.o hydro_eqns.o hydro_mtx.o hydro_newton.o report.o log.o pulsation_info.o profile_getval.o profile.o do_one_utils.o timestep.o adjust_xyz.o adjust_mass.o adjust_mesh_support.o adjust_mesh_plot.o adjust_mesh.o element_diffusion.o evolve_support.o solve_hydro.o struct_burn_mix.o winds.o evolve.o relax.o pre_ms_model.o read_model.o write_model.o init_model.o init.o pgstar_ctrls_io.o pgstar_support.o pgstar_conv.o pgstar_hr.o pgstar_trho.o pgstar_cntr_hist.o pgstar_surf_hist.o pgstar_trho_profile.o pgstar_profile.o pgstar_mode_prop.o pgstar_power.o pgstar_abundance.o pgstar_abund_power.o pgstar_logg_Teff.o pgstar_hr_trho.o pgstar_summary.o pgstar_dynamo.o pgstar_mixing_Ds.o pgstar_mixing_dynamo.o pgstar_abund_pwr_dmix.o pgstar_abund_pwr_dmix_dyn.o pgstar.o star_lib.o se_support.o run_star_support.o sample_pgstar_plot.o make: `libstar.a' is up to date. gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run_star_extras.f gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run_star.f gfortran -fno-range-check -fopenmp -I../../make -I../../public -I../../../include -I/opt/mesasdk/include -fbounds-check -g -c -ffree-form ../src/run.f gfortran -fno-range-check -fopenmp -o ../star \ run_star_extras.o run_star.o run.o -L../../make -lstar -L../../../lib -ldiffusion -lionization -latm -lcolors -lmlt -leos -lkap -lnet -lscreen -lrates -lreaclib -lweak -lneu -lchem -linterp_2d -linterp_1d -lnum -lutils -lalert - lconst -lmtx -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_pgplot_link` `mesasdk_se_link` /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status make: *** [star] Error 1 FAILED /home/clawuser/mesa/star/test FAILED /home/clawuser/mesa/star ./build_and_test FAILED [mesa] $ ======================================end of output======================================= |
|
From: Giannotti, M. <MGi...@ma...> - 2012-01-25 18:45:26
|
Hello Bill, Thanks for your prompt response. I did as you said. I copied your files (log42.data and profiles.index) in my LOGS folder, and I ran the command. This is the output that I get: mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ tioga by_mass -m 0 loading /home/mesa2/Desktop/projects/multi_work/star_profile/by_mass.rb log_mass_frac_ymin -6 write FYI track info xs.length 1040 xs[0] 2.98962080547118 xs[-1] 1.17545985800201e-07 @xmin @xmax @grid_min 0 @grid_max -1 xs[@grid_min] 2.98962080547118 xs[@grid_max] 1.17545985800201e-07 show_by @xaxis_by mass name abundances no frills false eval_str = abundances(xs, xlabel) 0 /home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf mesa2@mesa2:~/Desktop/projects/multi_work/star_profile$ The output is very similar to what you get, except for the line Abundances_figure.pdf just after eval_str = abundances(xs, xlabel) However, the folder profile_out is empty. If I try to see the output file that is what I get: home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf bash: home/mesa2/Desktop/projects/multi_work/star_profile/profiles_out/Abundances.pdf: No such file or directory Notice that I have UBUNTU and not the latest version of MESA (I still have the version installed around last September). I am pretty confused about what is going on. Do you think I should try to install the latest version of MESA, reinstall TIOGA, and try again? Thank you very much for you help. Maurizio From: Bill Paxton [mailto:pa...@ki...] Sent: Tuesday, January 24, 2012 10:16 PM To: Giannotti, Maurizio Cc: mes...@li... Subject: Re: [mesa-users] Problems with TIOGA Hi Maurizio, I just checked on my machine. I did a run in the work directory so that there were files in LOGS. Then I did cd star_profile and ran tioga using the same command you did. I got the following terminal output and also found the following new file in profiles_out. /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0 loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb log_mass_frac_ymin -6 xs.length 1040 xs[0] 2.98962080547118 xs[-1] 1.17545985800201e-07 @xmin @xmax @grid_min 0 @grid_max -1 xs[@grid_min] 2.98962080547118 xs[@grid_max] 1.17545985800201e-07 show_by @xaxis_by mass name abundances no frills false eval_str = abundances(xs, xlabel) Abundances_figure.pdf 0 /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf Do you get similar terminal output to this? Try putting these files in your work/LOGS. Then you'll have the same data for plotting as I do. You should then get the same pdf output. Do you get anything? -Bill On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote: I have been using MESA for a while, and lately I have tried to install Tioga. Everything seems to go well. I can run the examples in the tioga folder, see the pdf of the Tioga icon, and also the blue and the red figures. However, when I try to make a plot from the Mesa/work folder, Tioga does not produce any output. For example, if I go in the star_profile folder and run tioga by_mass -m 0 it does make the folder profiles_out, and I get a message that indicates the production of the file Abundances.pdf. However the file is not there. No error message. I have had this problem for several weeks, and no matter what I do, I cannot produce the pdf files. |
|
From: Bill P. <pa...@ki...> - 2012-01-25 03:16:26
|
Hi Maurizio, I just checked on my machine. I did a run in the work directory so that there were files in LOGS. Then I did cd star_profile and ran tioga using the same command you did. I got the following terminal output and also found the following new file in profiles_out. /Users/bpaxton/mesa/star/work/star_profile: tioga by_mass -m 0 loading /Users/bpaxton/mesa/star/work/star_profile/by_mass.rb log_mass_frac_ymin -6 xs.length 1040 xs[0] 2.98962080547118 xs[-1] 1.17545985800201e-07 @xmin @xmax @grid_min 0 @grid_max -1 xs[@grid_min] 2.98962080547118 xs[@grid_max] 1.17545985800201e-07 show_by @xaxis_by mass name abundances no frills false eval_str = abundances(xs, xlabel) Abundances_figure.pdf 0 /Users/bpaxton/mesa/star/work/star_profile/profiles_out/Abundances.pdf Do you get similar terminal output to this? Try putting these files in your work/LOGS. Then you'll have the same data for plotting as I do. You should then get the same pdf output. Do you get anything? -Bill On Jan 24, 2012, at 6:14 PM, Giannotti, Maurizio wrote: > I have been using MESA for a while, and lately I have tried to install Tioga. Everything seems to go well. I can run the examples in the tioga folder, see the pdf of the Tioga icon, and also the blue and the red figures. However, when I try to make a plot from the Mesa/work folder, Tioga does not produce any output. For example, if I go in the star_profile folder and run > > tioga by_mass -m 0 > > it does make the folder profiles_out, and I get a message that indicates the production of the file Abundances.pdf. However the file is not there. No error message. I have had this problem for several weeks, and no matter what I do, I cannot produce the pdf files. |
|
From: Giannotti, M. <MGi...@ma...> - 2012-01-25 02:27:16
|
Hello, I have been using MESA for a while, and lately I have tried to install Tioga. Everything seems to go well. I can run the examples in the tioga folder, see the pdf of the Tioga icon, and also the blue and the red figures. However, when I try to make a plot from the Mesa/work folder, Tioga does not produce any output. For example, if I go in the star_profile folder and run tioga by_mass -m 0 it does make the folder profiles_out, and I get a message that indicates the production of the file Abundances.pdf. However the file is not there. No error message. I have had this problem for several weeks, and no matter what I do, I cannot produce the pdf files. Anybody has some suggestions? Thank you very much, Maurizio Maurizio Giannotti, Assistant Professor of Physics, Physical Sciences, Barry University, 11300 NE 2nd Ave., Miami Shores, FL 33161 mgi...@ma...<mailto:mgi...@ma...> 305-899-4565 (office), 305-899-3479 (fax) |
|
From: Francis T. <fx...@ma...> - 2012-01-24 01:01:49
|
Dear Sam and the MESA community, Arranging and funding a suitable broadcast is a wonderful idea. However, it is simply too much for us to address for this first summer school. It is something we will certainly keep in mind as we organize and seek funding for future MESA schools. In the meantime, we expect to be posting "suggested readings" before the school starts, and pdf files of the lectures after the school ends. Not as nice as a broadcast, but its what we can offer for the resources we have. The School Directors On Jan 23, 2012, at 1:32 PM, Samuel Harrold wrote: > Dear MESA Summer School organizers and MESA community, > > Because of cuts to travel budgets and the cap on the total number of participants in the MESA Summer School, some postdocs and graduate students who would benefit from attending the Summer School will be unable to attend. Please enable participants to attend the Summer School remotely by broadcasting the meeting over the Internet. As a graduate student, it would be much easier for me to acquire funding for access to the Summer School online, say $20 each day, rather than for travel and lodging, which is in the hundreds of dollars. > > Please use a web conferencing service such as that provided by gotomeeting.com (http://www.gotomeeting.com/fec/web_conferencing_comparison). As a prospective MESA Summer School participant, I would be very willing to pay an access fee in order to support the use of such software and the personnel who facilitate the web conference. > > Thank you, > Sam Harrold > __________ > Samuel Harrold > University of Texas at Austin > Graduate Student ------------------------------------------------------------------------------ > Try before you buy = See our experts in action! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-dev2_______________________________________________ > mesa-users mailing list > mes...@li... > https://lists.sourceforge.net/lists/listinfo/mesa-users |
|
From: Samuel H. <ha...@as...> - 2012-01-23 20:32:54
|
Dear MESA Summer School organizers and MESA community, Because of cuts to travel budgets and the cap on the total number of participants in the MESA Summer School, some postdocs and graduate students who would benefit from attending the Summer School will be unable to attend. Please enable participants to attend the Summer School remotely by broadcasting the meeting over the Internet. As a graduate student, it would be much easier for me to acquire funding for access to the Summer School online, say $20 each day, rather than for travel and lodging, which is in the hundreds of dollars. Please use a web conferencing service such as that provided by gotomeeting.com (http://www.gotomeeting.com/fec/web_conferencing_comparison). As a prospective MESA Summer School participant, I would be very willing to pay an access fee in order to support the use of such software and the personnel who facilitate the web conference. Thank you, Sam Harrold __________ Samuel Harrold University of Texas at Austin Graduate Student |
|
From: Josiah S. <js...@gm...> - 2012-01-23 04:14:23
|
grep says it lives in mtx/public/mtx_rcond.dek
Best,
Josiah
On Jan 22, 2012, at 8:00 PM, jin...@ca... wrote:
> Well, if it is called in hydro_mxt, it should be defined somewhere...
>
>> The current version of MESA is 3851 -- I think it might be an idea to
>> upgrade and then try again.
>>
>> cheers,
>>
>> Rich
>>
>> On Jan 22, 2012, at 7:42 PM, jin...@ca... wrote:
>>
>>> Hello,
>>>
>>> I am studying the file star/private/hydro_mtx.f, in which there is a
>>> line
>>>
>>> call mtx_rcond_banded('n', m, n, KU, KL, AB, ldAB, ipiv, eval_rcond,
>>> work,
>>> iwork, ierr)
>>>
>>> I am using mesa version 2664. I could not find the definition of this
>>> subroutine. Any hint?
>>>
>>> Thank you very much :-)
>>>
>>> Sincerely,
>>> Jing
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Try before you buy = See our experts in action!
>>> The most comprehensive online learning library for Microsoft developers
>>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
>>> Metro Style Apps, more. Free future releases when you subscribe now!
>>> http://p.sf.net/sfu/learndevnow-dev2
>>> _______________________________________________
>>> mesa-users mailing list
>>> mes...@li...
>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
>
>
> ------------------------------------------------------------------------------
> Try before you buy = See our experts in action!
> The most comprehensive online learning library for Microsoft developers
> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
> Metro Style Apps, more. Free future releases when you subscribe now!
> http://p.sf.net/sfu/learndevnow-dev2
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
|
|
From: <jin...@ca...> - 2012-01-23 04:00:15
|
Well, if it is called in hydro_mxt, it should be defined somewhere...
> The current version of MESA is 3851 -- I think it might be an idea to
> upgrade and then try again.
>
> cheers,
>
> Rich
>
> On Jan 22, 2012, at 7:42 PM, jin...@ca... wrote:
>
>> Hello,
>>
>> I am studying the file star/private/hydro_mtx.f, in which there is a
>> line
>>
>> call mtx_rcond_banded('n', m, n, KU, KL, AB, ldAB, ipiv, eval_rcond,
>> work,
>> iwork, ierr)
>>
>> I am using mesa version 2664. I could not find the definition of this
>> subroutine. Any hint?
>>
>> Thank you very much :-)
>>
>> Sincerely,
>> Jing
>>
>>
>> ------------------------------------------------------------------------------
>> Try before you buy = See our experts in action!
>> The most comprehensive online learning library for Microsoft developers
>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
>> Metro Style Apps, more. Free future releases when you subscribe now!
>> http://p.sf.net/sfu/learndevnow-dev2
>> _______________________________________________
>> mesa-users mailing list
>> mes...@li...
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
|
|
From: Richard T. <tow...@as...> - 2012-01-23 01:44:53
|
The current version of MESA is 3851 -- I think it might be an idea to upgrade and then try again.
cheers,
Rich
On Jan 22, 2012, at 7:42 PM, jin...@ca... wrote:
> Hello,
>
> I am studying the file star/private/hydro_mtx.f, in which there is a line
>
> call mtx_rcond_banded('n', m, n, KU, KL, AB, ldAB, ipiv, eval_rcond, work,
> iwork, ierr)
>
> I am using mesa version 2664. I could not find the definition of this
> subroutine. Any hint?
>
> Thank you very much :-)
>
> Sincerely,
> Jing
>
>
> ------------------------------------------------------------------------------
> Try before you buy = See our experts in action!
> The most comprehensive online learning library for Microsoft developers
> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
> Metro Style Apps, more. Free future releases when you subscribe now!
> http://p.sf.net/sfu/learndevnow-dev2
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
|
|
From: <jin...@ca...> - 2012-01-23 01:42:45
|
Hello,
I am studying the file star/private/hydro_mtx.f, in which there is a line
call mtx_rcond_banded('n', m, n, KU, KL, AB, ldAB, ipiv, eval_rcond, work,
iwork, ierr)
I am using mesa version 2664. I could not find the definition of this
subroutine. Any hint?
Thank you very much :-)
Sincerely,
Jing
|
138 messages has been excluded from this view by a project administrator.
