Re: [Matplotlib-users] netcdf4-python build

[Jeff W. <jef...@no...>]

On 9/19/12 3:29 PM, Michael Rawlins wrote:
>
>
>     ------------------------------------------------------------------------
>     *From:* Jeff Whitaker <jef...@no...>
>     *To:* Michael Rawlins <raw...@ya...>
>     *Sent:* Wednesday, September 19, 2012 4:57 PM
>     *Subject:* Re: [Matplotlib-users] netcdf4-python build
>
>     On 9/19/12 2:43 PM, Michael Rawlins wrote:
>>
>>
>>     ------------------------------------------------------------------------
>>     *From:* Johann Rohwer <jr...@su...> <mailto:jr...@su...>
>>     *To:* mat...@li...
>>     <mailto:mat...@li...>
>>     *Sent:* Wednesday, September 19, 2012 3:22 PM
>>     *Subject:* Re: [Matplotlib-users] netcdf4-python build
>>
>>     On 19/09/2012 21:14, Michael Rawlins wrote:
>>
>>     > Just installed h5utils from package manager. Getting same
>>     errors.  In
>>     > package manager I'm searching on hdf5. If there's a package
>>     there I'm
>>     > missing, then it certainly is not obvious.
>>
>>     Try
>>
>>     libhdf5-serial
>>     libhdf5-serial-dev
>>     Johann
>>
>>
>>
>>     After installing those two packages I was able build with
>>     setup.py <http://setup.py/> in netCDF4-1.0/
>>
>>     Last few lines of the build:
>>
>>     creating build/scripts.linux-i686-2.7
>>     copying and adjusting utils/nc3tonc4 -> build/scripts.linux-i686-2.7
>>     copying and adjusting utils/nc4tonc3 -> build/scripts.linux-i686-2.7
>>     changing mode of build/scripts.linux-i686-2.7/nc3tonc4 from 644
>>     to 755
>>     changing mode of build/scripts.linux-i686-2.7/nc4tonc3 from 644
>>     to 755
>>
>>
>>     Here is my initialization:
>>
>>     from mpl_toolkits.basemap import Basemap, shiftgrid, cm
>>     from netCDF4 import Dataset as NetCDFFile
>>
>>     Here is result of execution of script:
>>
>>     Traceback (most recent call last):
>>       File "map_PrcpBias_Northeast.py
>>     <http://map_prcpbias_northeast.py/>", line 21, in <module>
>>         from netCDF4 import Dataset as NetCDFFile
>
>     Michael:  Please include the full traceback - what you posted
>     doesn't really tell us anything.
>
>
>     How is full traceback obtained?
>

Michael:  I just meant for you to paste the full output, not just the 
first three lines.

Since you apparently have all the libs installed, I don't understand 
what's going on.  Please try deleting the netcdf4-python build 
directory, and then run 'python setup.py build' again, capturing the 
output in a file.  Send me that file off-list and I'll see if I can 
suggest something.

-Jeff
>
>
>
>>
>>     I understand using the python-netcdf package is an option.
>>     Installed that but am getting an eror saying missing
>>     libhdf5_hl.so.6 when trying:
>     Do you have libhdf5_hl.so anywhere on your system after installing
>     the libhdf5-serial package? According to this
>
>     http://packages.ubuntu.com/lucid/i386/libhdf5-serial-1.8.4/filelist
>
>     it should be installed in /usr/lib.
>
>
>     Yes it is in /usr/lib.
>
>
>     Also, if I read this
>
>     http://packages.ubuntu.com/natty/libnetcdf6
>
>     correctly, just installing the libnetcdf6 and libnetcdf-dev
>     packages should be all you need to do - they depend on libhdf5-serial.
>
>     -Jeff
>
>
>     Both packages are installed.
>
>     MR
>
>>
>>     from Scientific.IO <http://scientific.io.net/>.NetCDF import
>>     NetCDFFile
>>
>>     MR
>>
>>
>>
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>
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