Lep-MAP3 Discussion

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Topic	Posts	Views	Last Post
SeparateChromosomes2 with usePhysical By Xuemei Tang on Fri Nov 21, 2025 03:12 PM	6	38	By Pasi Rastas on Tue Nov 25, 2025 02:56 PM
Advice on Filtering SNPs in LEP-MAP3 By Cheng Chen on Sun Oct 19, 2025 02:25 PM	2	50	By Pasi Rastas on Thu Oct 23, 2025 07:59 AM
Linkage mapping with half-sib population without parental genotypes By Esteban on Thu Oct 09, 2025 09:16 PM	2	45	By Pasi Rastas on Thu Oct 23, 2025 07:46 AM
Diagnosing problem from LMPlot output By Zach on Thu Sep 18, 2025 06:31 PM	3	71	By Zach on Mon Sep 29, 2025 06:55 PM
Parallel regions in LG plots only when combining multiple families By Jessica Hintzsche on Tue Sep 16, 2025 08:34 PM	2	50	By Pasi Rastas on Wed Sep 17, 2025 08:16 AM
format of the usePhysical file By Angus Davison on Mon Jul 07, 2025 09:38 AM	3	99	By Angus Davison on Tue Sep 09, 2025 02:07 PM
Difference between recombination2=0 and informativeMask=1 By Eric Gonzalez on Wed Apr 02, 2025 05:29 AM	13	199	By Pasi Rastas on Tue Aug 12, 2025 11:25 AM
Pedigree file for selfing individuals By hfan on Fri May 09, 2025 02:15 AM	16	185	By hfan on Tue Jul 01, 2025 03:50 AM
Two new Linkage Groups after running JoinSingles2All By Matt Wersebe on Mon Jan 18, 2021 03:48 PM	4	269	By hfan on Tue May 20, 2025 03:21 AM
one parent miss position with 0.000 value in partial chromosomes By Cheng Chen on Thu Apr 17, 2025 03:38 AM	4	107	By Pasi Rastas on Mon May 05, 2025 09:00 AM
Parallel lines in multi-family data By Lorenzo on Mon Apr 14, 2025 01:54 AM	2	68	By Pasi Rastas on Tue Apr 15, 2025 12:21 PM
Consensus map By Yutang Chen on Wed Apr 02, 2025 08:27 AM	5	68	By Yutang Chen on Fri Apr 11, 2025 12:34 PM
Meaning of the 0 0 values at the end of phased data lines in OrderM... By Jessica Hintzsche on Tue Apr 08, 2025 03:32 AM	2	82	By Pasi Rastas on Wed Apr 09, 2025 08:24 AM
diploid parents and haploid full-sib offspring By Brandon on Thu Jan 16, 2025 02:06 PM	16	202	By Pasi Rastas on Tue Apr 01, 2025 08:44 PM
Merge LG By Eric Gonzalez on Wed Mar 26, 2025 01:10 AM	6	189	By Eric Gonzalez on Thu Mar 27, 2025 09:56 PM
likelihood value By 康明明 on Thu Mar 06, 2025 12:18 PM	8	150	By Pasi Rastas on Wed Mar 19, 2025 09:09 AM
Creating Pedigree Files with F2 Generation Population By 康明明 on Tue Mar 04, 2025 12:33 PM	2	93	By 康明明 on Tue Mar 04, 2025 01:20 PM
How to creat pedigree file for crosses with multiple parents By chenli on Thu Jun 20, 2019 09:47 AM	8	431	By Afewerki Yohannes Kiros on Thu Feb 27, 2025 09:48 PM
FitStepFunction for monotonically increasing maps By Catherine on Fri Feb 21, 2025 02:01 PM	4	56	By Catherine on Tue Feb 25, 2025 01:47 PM
Questions on Pedigree File Format, Marker Inheritance, and Phenotype ... By Bin Hirota on Tue Dec 17, 2024 08:20 AM	6	133	By Bin Hirota on Mon Jan 06, 2025 02:53 AM
"Sex" map distance differences in hemaphroditic F2 cross By Daniel P Wood on Fri Jan 21, 2022 04:04 PM	3	510	By Daniel P Wood on Mon Jan 24, 2022 09:16 AM
Recombination map with complex pedigrees from natural populations of ... By Dario Galanti on Mon Nov 18, 2024 12:34 PM	3	110	By Pasi Rastas on Tue Dec 03, 2024 07:59 AM
About sex average map. By Kun on Wed Nov 18, 2020 02:53 AM	3	400	By Kun on Thu Nov 19, 2020 01:39 AM
Error: Same individual is twice in the data IBD command By Théo on Fri Nov 15, 2024 02:57 PM	3	132	By Pasi Rastas on Tue Nov 19, 2024 01:17 PM
Nucleotide Code Conversion in LepMap3 By Qiuni Yang on Wed Oct 30, 2024 10:06 PM	3	103	By Qiuni Yang on Mon Nov 04, 2024 04:11 PM

1 2 3 .. 11 > >> (Page 1 of 11)

Lep-MAP3 Discussion

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General Discussion

SeparateChromosomes2 with usePhysical

Advice on Filtering SNPs in LEP-MAP3

Linkage mapping with half-sib population without parental genotypes

Diagnosing problem from LMPlot output

Parallel regions in LG plots only when combining multiple families

format of the usePhysical file

Difference between recombination2=0 and informativeMask=1

Pedigree file for selfing individuals

Two new Linkage Groups after running JoinSingles2All

one parent miss position with 0.000 value in partial chromosomes

Parallel lines in multi-family data

Consensus map

Meaning of the 0 0 values at the end of phased data lines in OrderM...

diploid parents and haploid full-sib offspring

Merge LG

likelihood value

Creating Pedigree Files with F2 Generation Population

How to creat pedigree file for crosses with multiple parents

FitStepFunction for monotonically increasing maps

Questions on Pedigree File Format, Marker Inheritance, and Phenotype ...

"Sex" map distance differences in hemaphroditic F2 cross

Recombination map with complex pedigrees from natural populations of ...

About sex average map.

Error: Same individual is twice in the data IBD command

Nucleotide Code Conversion in LepMap3

Lep-MAP3 Discussion

Forums

Help

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General Discussion