Lep-MAP3 Discussion

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Topic	Posts	Views	Last Post
Break up the chromosome as Pileup2Likelihoods input By Hongbo WANG on Tue Sep 05, 2023 02:55 AM	2	122	By Pasi Rastas on Wed Sep 06, 2023 11:32 AM
Problems with ordermarkers2 By Corin Stansfield on Mon Aug 14, 2023 11:45 AM	8	484	By Corin Stansfield on Fri Aug 18, 2023 02:01 PM
Working on haploid dataset By Masakazu Hoshino on Tue Aug 01, 2023 02:01 AM	7	324	By Masakazu Hoshino on Mon Aug 07, 2023 06:01 AM
genetic linkage map for an f2 cross, a physical genome assembled to c... By Talal AL Yazeedi on Tue Aug 01, 2023 02:25 PM	3	188	By Talal AL Yazeedi on Wed Aug 02, 2023 02:54 PM
OrderMarkers2 is ordering the wrong subset of markers By Corin Stansfield on Thu Jul 20, 2023 03:23 PM	2	185	By Corin Stansfield on Fri Jul 21, 2023 10:25 AM
Individual names not found from the vcf file By Corin Stansfield on Mon Jun 26, 2023 02:06 PM	5	323	By Corin Stansfield on Tue Jun 27, 2023 12:19 PM
ParentCall2 java error By Colby Behrens on Tue May 23, 2023 09:45 PM	3	183	By Pasi Rastas on Tue Jun 20, 2023 11:20 AM
Keep all markers in OrderMarkers2 step. By Kun on Thu Mar 23, 2023 02:14 AM	3	183	By Kun on Tue Apr 04, 2023 02:51 AM
How to match Individual names when there are multiple families. By Kun on Thu Mar 23, 2023 08:45 AM	3	121	By Kun on Tue Apr 04, 2023 02:49 AM
OrderMarkers2 scale parameter By Hui Zhen Tan on Tue Mar 21, 2023 03:51 AM	8	550	By Hui Zhen Tan on Sun Apr 02, 2023 10:29 PM
Unresolved compilation problem in ParentCall2 By Pauline Raim on Tue Feb 28, 2023 07:02 PM	3	184	By Pauline Raim on Sat Mar 04, 2023 11:24 AM
Filtering after ordering, sex chromosome, grandparents and lcWGS By Alexandros Topaloudis on Thu Jan 19, 2023 03:16 PM	2	157	By Pasi Rastas on Mon Jan 23, 2023 08:05 AM
Trouble with SeparateChromosomes By Tami Leanne Hildahl on Sun Dec 04, 2022 06:36 PM	10	527	By Pasi Rastas on Tue Dec 20, 2022 09:01 AM
Indels in vcf file By Yutang Chen on Tue Nov 15, 2022 09:51 AM	2	151	By Pasi Rastas on Tue Nov 15, 2022 03:51 PM
SeparateChromosomes2 error: String index out of range: By RWhetten on Fri Oct 21, 2022 05:51 PM	4	346	By RWhetten on Tue Oct 25, 2022 04:50 PM
Exception in thread "main" java.lang.NullPointerException By Wang Changsheng on Fri Sep 09, 2022 04:08 AM	5	150	By Wang Changsheng on Tue Sep 13, 2022 01:11 AM
Using OrderMarkers2 as an imputation tool for low coverage WGS with e... By Tianzhu Xiong on Fri Jul 15, 2022 02:24 AM	6	339	By Pasi Rastas on Mon Aug 22, 2022 01:09 PM
Phase By Andhika Faisal Mubarok on Wed Jul 13, 2022 02:30 AM	2	177	By Pasi Rastas on Mon Aug 01, 2022 08:04 AM
Genotype imputation for a RIL cross design By Andrea Sweigart on Fri Jun 17, 2022 05:30 PM	4	297	By Pasi Rastas on Wed Jun 22, 2022 07:52 AM
'removeNonInformative' argument By Alex Sotola on Tue Jun 14, 2022 01:11 PM	2	216	By Pasi Rastas on Tue Jun 14, 2022 08:18 PM
VCF files as input By Panagiotis Kokkinias on Wed May 11, 2022 01:39 PM	4	263	By Pasi Rastas on Fri May 13, 2022 06:24 AM
Reciprocal cross By Yutang Chen on Mon Apr 04, 2022 01:45 PM	7	292	By Yutang Chen on Thu Apr 21, 2022 08:14 AM
Understanding phased results By Elen Oneal on Fri Dec 10, 2021 02:16 PM	7	929	By Pasi Rastas on Thu Dec 16, 2021 09:30 AM
Lots of uncertain/ambigous markers in the ordered maps By Karin Näsvall on Wed Nov 10, 2021 01:47 PM	4	964	By Pasi Rastas on Fri Dec 03, 2021 03:05 PM
half-sib family Problem By Felix on Sat Nov 13, 2021 03:29 PM	4	427	By Pasi Rastas on Tue Nov 16, 2021 07:30 PM

<< < 1 2 3 4 5 .. 11 > >> (Page 3 of 11)

Lep-MAP3 Discussion

Forums

Help

General Discussion

Break up the chromosome as Pileup2Likelihoods input

Problems with ordermarkers2

Working on haploid dataset

genetic linkage map for an f2 cross, a physical genome assembled to c...

OrderMarkers2 is ordering the wrong subset of markers

Individual names not found from the vcf file

ParentCall2 java error

Keep all markers in OrderMarkers2 step.

How to match Individual names when there are multiple families.

OrderMarkers2 scale parameter

Unresolved compilation problem in ParentCall2

Filtering after ordering, sex chromosome, grandparents and lcWGS

Trouble with SeparateChromosomes

Indels in vcf file

SeparateChromosomes2 error: String index out of range:

Exception in thread "main" java.lang.NullPointerException

Using OrderMarkers2 as an imputation tool for low coverage WGS with e...

Phase

Genotype imputation for a RIL cross design

'removeNonInformative' argument

VCF files as input

Reciprocal cross

Understanding phased results

Lots of uncertain/ambigous markers in the ordered maps

half-sib family Problem

Lep-MAP3 Discussion

Forums

Help

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General Discussion