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From: Marie G. <mag...@ps...> - 2006-11-14 09:52:38
|
I have installed the infomap-program in Sweden in my research on language on
media. My hope is that this program will make it possible for me to analyse
large text corpuras.
I do the installation using the ./configure --prefix command. When I try to buld
a model i get the same errors consequently (tried on both small and large single
corpuras -s).
My hope is that you can provide som help on the error reports i get. It seems
like the computer tries to malloc to much space (I am not an engineer, so I hope
I make myself understood).
Yours sincerely,
Marie Gustafsson
PhD Student, University of Stockholm, Sweden
+46 708 77 44 49
Here is my error report
[marieg@docenten marieg]$ more test.scr.e441582
Locale set to en_US.
Opening File for "r":
"/disk/global1/marieg/install/share/infomap-nlp/valid_chars.en"
Opening File for "r":
""
my_fopen: No such file or directory
Opening File for "r":
"/disk/global1/marieg/install/share/infomap-nlp/stop.list"
Opening File for "w":
"/disk/global1/marieg/infomap_models/ad/wordlist"
Opening File for "r":
"/disk/global1/marieg/AD_2000-2006/ad2000-2001.txt"
Opening File for "w":
"/disk/global1/marieg/infomap_models/ad/numDocs"
Typecount = 282352
Preparing to sort ... Sorting ... Done.
Opening File for "w":
"/disk/global1/marieg/infomap_models/ad/dic"
model data dir is "/disk/global1/marieg/infomap_models/ad".
Reading the dictionary... Opening File for "r":
"/disk/global1/marieg/infomap_models/ad/dic"
Opening File for "r":
"/disk/global1/marieg/infomap_models/ad/numDocs"
Initializing row indices...Done.
Initializing column indices...Done.
Allocating matrix memory...done.
Initializing matrix...done.
model data dir is "/disk/global1/marieg/infomap_models/ad".
count_wordvec.c: about to call process_wordlist
Entering process_wordlist.
About to call initialize_wordlist.
Opening File for "r":
"/disk/global1/marieg/infomap_models/ad/wordlist"
Returned from initialize_wordlist.
Writing the co-occurrence matrix.
Opening File for "w":
"/disk/global1/marieg/infomap_models/ad/coll"
Opening File for "w":
"/disk/global1/marieg/infomap_models/ad/indx"
make: Warning: File `/disk/global1/marieg/infomap_models/ad/indx' has modificati
on time 0.039 s in the future
This is svdinterface.
Writing to: left
Writing to: rght
Writing to: sing
Writing to: svd_diag
Reading: indx
Reading: indx
Reading: coll
/bin/sh: line 1: 15703 Segmentation fault svdinterface -singvals 100 -iter
100
make: *** [/disk/global1/marieg/infomap_models/ad/left] Error 139
--
==============================
Marie Gustafsson
Department of Psychology
Stockholm University
SE-106 91 Stockholm, SWEDEN
Tel +46 8 - 16 39 46
Cell phone +46 708 77 44 49
mg...@ps...
==============================
|
|
From: Scott C. <ced...@gm...> - 2006-11-03 17:55:38
|
Hi Tonio,
Well, I'm not at all sure what is causing this. A couple of
things you might want to try:
1. Rebuild the software (configure/make) and try again.
2. Run the command that failed count_wordvec command that
failed (shown below)
within gdb, and do a backtrace to find out where the segmentation
fault happened. Report back.
Sorry I can't be any more helpful... good luck.
Scott
count_wordvec \
-mdir /cygdrive/f/IMmodels//Test2 \
-matlab 0 \
-precontext 100 \
-postcontext 100 \
-rows 80000 \
-columns 2999 \
-col_labels_from_file 0 \
-col_label_file ""
On 11/1/06, Tonio Wandmacher <ton...@un...> wrote:
> Hello,
>
> when running a build on a rather small corpus (14 M words), infomap
> stopped the execution, telling me "Error while dumping state (probably
> corrupted stack)".
> I work under cygwin and I have never had any problems before. I've done
> exactly the same before using much larger corpora, and they ran
> smoothly. Do you have any idea of what has gone wrong?
>
> Thanks !
>
> Tonio
>
> P.S. Here's the shell output:
>
> $ nice infomap-build -w /cygdrive/f/IMmodels/ -p
> /cygdrive/f/IMmodels/params_de1.txt -s /cygdrive/f/IMmodels/taz.wsp TAZ
> Sourcing param file "/cygdrive/f/IMmodels/params_de1.txt"
> Sourcing extra param file "/tmp/infomap-build.kt3160"
> Contents are:
> Removing extra param file
> WORKING_DATA_DIR =3D "/cygdrive/f/IMmodels//Test2"
> CORPUS_DIR =3D "/cygdrive/f/IMmodels"
> CORPUS_FILE =3D "/cygdrive/f/IMmodels/test.wsp"
> FNAMES_FILE =3D ""
> ROWS =3D "80000"
> COLUMNS =3D "2999"
> SINGVALS =3D "150"
> SVD_ITER =3D "450"
> PRE_CONTEXT_SIZE =3D "100"
> POST_CONTEXT_SIZE =3D "100"
> WRITE_MATLAB_FORMAT =3D "0"
> VALID_CHARS_FILE =3D "valid_chars.de"
> STOPLIST_FILE =3D "stopDEucf.txt"
> COL_LABELS_FROM_FILE =3D "0"
> COL_LABEL_FILE =3D ""
> echo "Making datadir"
> Making datadir
> mkdir -p /cygdrive/f/IMmodels//Test2
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
> Building target: /cygdrive/f/IMmodels//Test2/wordlist
> Prerequisites: /cygdrive/f/IMmodels/test.wsp
> Wed Nov 1 15:49:31 WEST 2006
> ..................................................
> prepare_corpus \
> -cdir "/cygdrive/f/IMmodels" \
> -mdir "/cygdrive/f/IMmodels//Test2" \
> -cfile "/cygdrive/f/IMmodels/test.wsp" \
> -fnfile "" \
> -chfile "valid_chars.de" \
> -slfile "stopDEucf.txt" \
> -rptfile ""
> Locale set to (null).
> Opening File for "r":
> "valid_chars.de"
> Opening File for "r":
> ""
> my_fopen: No such file or directory
> Opening File for "r":
> "stopDEucf.txt"
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/wordlist"
> Opening File for "r":
> "/cygdrive/f/IMmodels/test.wsp"
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/numDocs"
> Typecount =3D 499545
> Preparing to sort ... Sorting ... Done.
> Opening File for "w":
> "/cygdrive/f/IMmodels//Test2/dic"
> ..................................................
> Finishing target: /cygdrive/f/IMmodels//Test2/wordlist
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
>
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D
> Building target: /cygdrive/f/IMmodels//Test2/coll
> Prerequisites: /cygdrive/f/IMmodels//Test2/wordlist
> /cygdrive/f/IMmodels//Test2/dic /cygdrive/f/IMmodels//Test2/numDocs
> Wed Nov 1 15:50:26 WEST 2006
> ..................................................
> count_wordvec \
> -mdir /cygdrive/f/IMmodels//Test2 \
> -matlab 0 \
> -precontext 100 \
> -postcontext 100 \
> -rows 80000 \
> -columns 2999 \
> -col_labels_from_file 0 \
> -col_label_file ""
> model data dir is "/cygdrive/f/IMmodels//Test2".
> count_wordvec.c: looking for 80000 rows
> which had better match 80000
> Reading the dictionary... Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/dic"
> Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/numDocs"
> Initializing row indices...Done.
> Initializing column indices...Done.
> Allocating matrix memory...done.
> Initializing matrix...done.
> model data dir is "/cygdrive/f/IMmodels//Test2".
> count_wordvec.c: about to call process_wordlist
> Entering process_wordlist.
> About to call initialize_wordlist.
> Opening File for "r":
> "/cygdrive/f/IMmodels//Test2/wordlist"
> Returned from initialize_wordlist.
> 264 [main] count_wordvec 3864 _cygtls::handle_exceptions: Error
> while dumping state (probably corrupted stack)
> make: *** [/cygdrive/f/IMmodels//Test2/coll] Segmentation fault (core
> dumped)
>
>
> --
> Tonio Wandmacher
> Wiss. Mitarbeiter
> Institut f=FCr Kognitionswissenschaft
> AG K=FCnstliche Intelligenz
> Universit=E4t Osnabr=FCck
> Albrechtstra=DFe 28
> D-49076 Osnabr=FCck
>
> Raum 31/450c
> Tel +49 (0)541 969-3391
> E-Mail: ton...@un...
>
> -------------------------------------------------------------------------
> Using Tomcat but need to do more? Need to support web services, security?
> Get stuff done quickly with pre-integrated technology to make your job ea=
sier
> Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronim=
o
> http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=
=3D121642
> _______________________________________________
> infomap-nlp-users mailing list
> inf...@li...
> https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users
>
|
|
From: Tonio W. <ton...@un...> - 2006-11-01 15:07:48
|
Hello, when running a build on a rather small corpus (14 M words), infomap=20 stopped the execution, telling me "Error while dumping state (probably=20 corrupted stack)". I work under cygwin and I have never had any problems before. I've done=20 exactly the same before using much larger corpora, and they ran=20 smoothly. Do you have any idea of what has gone wrong? Thanks ! Tonio P.S. Here's the shell output: $ nice infomap-build -w /cygdrive/f/IMmodels/ -p=20 /cygdrive/f/IMmodels/params_de1.txt -s /cygdrive/f/IMmodels/taz.wsp TAZ Sourcing param file "/cygdrive/f/IMmodels/params_de1.txt" Sourcing extra param file "/tmp/infomap-build.kt3160" Contents are: Removing extra param file WORKING_DATA_DIR =3D "/cygdrive/f/IMmodels//Test2" CORPUS_DIR =3D "/cygdrive/f/IMmodels" CORPUS_FILE =3D "/cygdrive/f/IMmodels/test.wsp" FNAMES_FILE =3D "" ROWS =3D "80000" COLUMNS =3D "2999" SINGVALS =3D "150" SVD_ITER =3D "450" PRE_CONTEXT_SIZE =3D "100" POST_CONTEXT_SIZE =3D "100" WRITE_MATLAB_FORMAT =3D "0" VALID_CHARS_FILE =3D "valid_chars.de" STOPLIST_FILE =3D "stopDEucf.txt" COL_LABELS_FROM_FILE =3D "0" COL_LABEL_FILE =3D "" echo "Making datadir" Making datadir mkdir -p /cygdrive/f/IMmodels//Test2 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Building target: /cygdrive/f/IMmodels//Test2/wordlist Prerequisites: /cygdrive/f/IMmodels/test.wsp Wed Nov 1 15:49:31 WEST 2006 .................................................. prepare_corpus \ -cdir "/cygdrive/f/IMmodels" \ -mdir "/cygdrive/f/IMmodels//Test2" \ -cfile "/cygdrive/f/IMmodels/test.wsp" \ -fnfile "" \ -chfile "valid_chars.de" \ -slfile "stopDEucf.txt" \ -rptfile "" Locale set to (null). Opening File for "r": "valid_chars.de" Opening File for "r": "" my_fopen: No such file or directory Opening File for "r": "stopDEucf.txt" Opening File for "w": "/cygdrive/f/IMmodels//Test2/wordlist" Opening File for "r": "/cygdrive/f/IMmodels/test.wsp" Opening File for "w": "/cygdrive/f/IMmodels//Test2/numDocs" Typecount =3D 499545 Preparing to sort ... Sorting ... Done. Opening File for "w": "/cygdrive/f/IMmodels//Test2/dic" .................................................. Finishing target: /cygdrive/f/IMmodels//Test2/wordlist =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Building target: /cygdrive/f/IMmodels//Test2/coll Prerequisites: /cygdrive/f/IMmodels//Test2/wordlist=20 /cygdrive/f/IMmodels//Test2/dic /cygdrive/f/IMmodels//Test2/numDocs Wed Nov 1 15:50:26 WEST 2006 .................................................. count_wordvec \ -mdir /cygdrive/f/IMmodels//Test2 \ -matlab 0 \ -precontext 100 \ -postcontext 100 \ -rows 80000 \ -columns 2999 \ -col_labels_from_file 0 \ -col_label_file "" model data dir is "/cygdrive/f/IMmodels//Test2". count_wordvec.c: looking for 80000 rows which had better match 80000 Reading the dictionary... Opening File for "r": "/cygdrive/f/IMmodels//Test2/dic" Opening File for "r": "/cygdrive/f/IMmodels//Test2/numDocs" Initializing row indices...Done. Initializing column indices...Done. Allocating matrix memory...done. Initializing matrix...done. model data dir is "/cygdrive/f/IMmodels//Test2". count_wordvec.c: about to call process_wordlist Entering process_wordlist. About to call initialize_wordlist. Opening File for "r": "/cygdrive/f/IMmodels//Test2/wordlist" Returned from initialize_wordlist. 264 [main] count_wordvec 3864 _cygtls::handle_exceptions: Error=20 while dumping state (probably corrupted stack) make: *** [/cygdrive/f/IMmodels//Test2/coll] Segmentation fault (core=20 dumped) --=20 Tonio Wandmacher Wiss. Mitarbeiter Institut f=FCr Kognitionswissenschaft AG K=FCnstliche Intelligenz Universit=E4t Osnabr=FCck Albrechtstra=DFe 28 D-49076 Osnabr=FCck Raum 31/450c Tel +49 (0)541 969-3391 E-Mail: ton...@un... |
|
From: Dominic W. <wi...@ma...> - 2006-10-16 03:51:54
|
Hi Brodie, I've never seen anything like this before. What operating system are you using, and has anything changed with =20 it? I wonder it updates to timezones (unlikely) or default character =20 sets may have affected your "Locale" - whatever "Locale" means in =20 this context. If anyone on the list has a good idea of what "Locale" =20 means please chime in ... Have you tried running "./configure" again? Even if it doesn't solve =20 the problem, it might give us some more information about what's =20 wrong. I would try that and send the output of the configure routine =20 if it doesn't work. Best wishes, Dominic On Oct 15, 2006, at 10:48 AM, Brodie wrote: > Hi. > > > > Please help! I keep getting this error: > > > > make: *** [/home//INFOMAP_DIR/models/model/wordlist] Error 139 > > Locale set to Segmentation Fault > > > > The weird thing is that it just happened overnight. It was working =20 > fine=85 I went to bed=85 the next day I get this error after changing =20= > NOTHING. > > > > Thanks. > > > > Brodie. > > ----------------------------------------------------------------------=20= > --- > Using Tomcat but need to do more? Need to support web services, =20 > security? > Get stuff done quickly with pre-integrated technology to make your =20 > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache =20 > Geronimo > http://sel.as-us.falkag.net/sel?=20 > cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=3D121642________________________= ______=20 > _________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users |
|
From: Brodie <br...@in...> - 2006-10-15 15:03:46
|
Hi. Please help! I keep getting this error: make: *** [/home//INFOMAP_DIR/models/model/wordlist] Error 139 Locale set to Segmentation Fault The weird thing is that it just happened overnight. It was working fine. I went to bed. the next day I get this error after changing NOTHING. Thanks. Brodie. |
|
From: Brodie <br...@in...> - 2006-10-15 14:47:51
|
Hi. Please help! I keep getting this error: make: *** [/home//INFOMAP_DIR/models/model/wordlist] Error 139 Locale set to Segmentation Fault The weird thing is that it just happened overnight. It was working fine. I went to bed. the next day I get this error after changing NOTHING. Thanks. Brodie. |
|
From: Scott C. <ced...@gm...> - 2006-10-05 16:22:13
|
Hi Brodie,
If you don't mind, I'd like to cc infomap-nlp-users on these
emails (as I've done on this message), so that they'll be archived and
searchable to future users, who might encounter the same problem. (If
you do mind, let me know in another off-list email, and I'll stop
cc'ing the list.)
svdinterface is part of infomap-nlp and should be built by make
and installed by "make install" to the bin/ subdirectory of whatever
directory you specified using the --prefix=<folder> option to
configure. So check <folder>/bin to see if it contains svdinterface.
(If it's not there, try looking in the svd/svdinterface subdirectory
of the top-level infomap directory you got when you unpacked the tar
file.)
If you can find svdinterface, add the directory containing it to
your PATH environment variable and try again. (The problem is caused
by the software assuming that svdinterface and other pieces of the
software will be installed to a directory that is normally used to
hold programs, and would therefore already be included in your PATH.)
If you can't find svdinterface, or if adding its directory to
PATH doesn't fix the problem, let me know.
Scott
On 10/5/06, Brodie <br...@ip...> wrote:
> Ok so I wrote my own version of mktemp which seems to work. But now I get
> the error:
>
> /bin/sh: svdinterface: not found
> make: *** [/tmp/brodier/infomap_working_dir/model_01/left] Error 1
>
> Any ideas?
>
> Thanks.
>
> -----Original Message-----
> From: Scott Cederberg [mailto:ced...@gm...]
> Sent: Thursday, 5 October 2006 2:46 AM
> To: Brodie
> Cc: inf...@li...
> Subject: Re: [infomap-nlp-users] ./infomap-build: mktemp: not found
>
> Hi Brodie,
>
> Do you have the program mktemp installed? On my system it's
> /bin/mktemp.
>
> I'm not really sure what's happening after that, but installing
> mktemp might fix the problem.
>
>
> Scott
>
> On 10/4/06, Brodie <br...@ip...> wrote:
> >
> >
> >
> >
> > Hi.
> >
> >
> >
> > I have installed infomap-nlp-0.8.6 into a local directory on a UNIX
> machine
> > using the "./configure --prefix=<folder>" option so that root access is
> not
> > required.
> >
> >
> >
> > When I run the command "infomap-build -m ~/docset/files.txt model_01" I
> get
> > the output:
> >
> >
> >
> > ./infomap-build: mktemp: not found
> >
> > Sourcing param file
> > "/home/local/share/infomap-nlp/default-params"
> >
> > Sourcing extra param file ""
> >
> > Contents are:
> >
> >
> >
> > At which point the program just hangs. Can anyone help me get it to work.
> > Thanks.
> >
> >
> >
> > Brodie.
> > -------------------------------------------------------------------------
> > Take Surveys. Earn Cash. Influence the Future of IT
> > Join SourceForge.net's Techsay panel and you'll get the chance to share
> your
> > opinions on IT & business topics through brief surveys -- and earn cash
> > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
> >
> > _______________________________________________
> > infomap-nlp-users mailing list
> > inf...@li...
> > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users
> >
> >
> >
>
>
|
|
From: Scott C. <ced...@gm...> - 2006-10-04 16:45:57
|
Hi Brodie,
Do you have the program mktemp installed? On my system it's /bin/mktemp.
I'm not really sure what's happening after that, but installing
mktemp might fix the problem.
Scott
On 10/4/06, Brodie <br...@ip...> wrote:
>
>
>
>
> Hi.
>
>
>
> I have installed infomap-nlp-0.8.6 into a local directory on a UNIX machine
> using the "./configure --prefix=<folder>" option so that root access is not
> required.
>
>
>
> When I run the command "infomap-build -m ~/docset/files.txt model_01" I get
> the output:
>
>
>
> ./infomap-build: mktemp: not found
>
> Sourcing param file
> "/home/local/share/infomap-nlp/default-params"
>
> Sourcing extra param file ""
>
> Contents are:
>
>
>
> At which point the program just hangs. Can anyone help me get it to work.
> Thanks.
>
>
>
> Brodie.
> -------------------------------------------------------------------------
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to share your
> opinions on IT & business topics through brief surveys -- and earn cash
> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
>
> _______________________________________________
> infomap-nlp-users mailing list
> inf...@li...
> https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users
>
>
>
|
|
From: Brodie <br...@ip...> - 2006-10-04 10:08:44
|
Hi. I have installed infomap-nlp-0.8.6 into a local directory on a UNIX machine using the "./configure --prefix=<folder>" option so that root access is not required. When I run the command "infomap-build -m ~/docset/files.txt model_01" I get the output: ./infomap-build: mktemp: not found Sourcing param file "/home/local/share/infomap-nlp/default-params" Sourcing extra param file "" Contents are: At which point the program just hangs. Can anyone help me get it to work. Thanks. Brodie. |
|
From: Dominic W. <wi...@ma...> - 2006-09-04 14:36:51
|
Dear Infomap Users, This message is as much for the record as anything else. (I've also posted it to the infomap help forum on sourceforge). Over the months there have been a variety of problems in the general area of getting the infomap- nlp software working properly with the gnu dbm libraries. I think several users have encountered this and sometimes found workarounds or had to install extra things. Mosts recently, I had just the same problem getting the infomap-nlp software to compile on ubuntu. Scott helped me to fix the problem, and I thought I should post a summary of what it was. I had installed the libgdbm3 package on my new OS. Generally there will always be some gdbm package you will want to have installed. However, the infomap "./configure" script couldn't find any of the library functions and so failed. Scott suggested the following: > Hi Dominic, > > Okay, regarding infomap-nlp on Ubuntu. The script reports two > problems, failing to find the DBM header files, and failing to find > the > appropriate library functions. Let's take these one at a time, in > that > order, and with luck maybe even solving the first problem will lead > the > second to take care of itself, you never know. > > For the header files, check your /usr/include directory. Search > it for files whose names contain ndbm or gdbm. E.g. > > $ find -name '*ndbm*' > $ find -name '*gdbm*' > > I have the files /usr/include/gdbm.h and /usr/include/gdbm-ndbm.h. > I also > have the symbolic link, ndbm.h, which points to gdbm-ndbm.h. If > you have > the first two files, make the ndbm.h->gdbm-ndbm.h symbolic link and > try > configuring again. If not, tell me what you do have and we'll go from > there. > It turned out that I didn't have any of these dbm files at all in /usr/include. To begin with, I needed to install a libgdbm-dev package, which contains developer tools and headers that were necessary for infomap to call the gdbm libraries. (Other compatability issues we've seen in the past are affected by libgdbm_compat - if you encounter a problem this is another name to look for ...) The libgdbm-dev package installed several gdbm related headers to /usr/include. I did need to create the symbolic link Scott refers to above (ln -s gdbm-ndbm.h ndbm.h). Once I had done this final step, configure, make, make install worked just fine and I could start building infomap models on my new system. Thanks very much to Scott for helping out once again, and I hope this message is useful to others who may encounter similar problems. Best wishes all, Dominic |
|
From: Scott C. <ced...@gm...> - 2006-08-25 15:30:53
|
Hi Henry,
I'm glad to hear that you got the software to build and work.
It looks to me from the output file you attach that the
infomap-install command is actually working; I think you don't need
the files it reports as missing. After running infomap-install, can
you run "associate" on the installed corpus in the manner described by
the documentation? If so, don't worry about the missing files. If
not, write back again and I'll try to help you solve the problem. A
more detailed explanation of what I think is going on appears below.
Except for the files number2name.dir and number2name.pag, all of
the files that are missing are "something.db". Probably you have
corresponding files something.dir and something.pag for each of these.
Although I'm not certain, my guess is that some DBM implementations
use two files, a .dir file and a .pag file, to represent a database,
while others use a single .db file. So you need *either* a .dir file
and a .pag file for a given database, or a .db file, but not both.
As for number2name.*, you only need these files for a multi-file
corpus. If the corpus you're processing consists of a single file,
none of the number2name files are necessary, and they will not be
generated.
This is clearly a bug in the infomap-install program, in that the
output it generates is misleading (it makes it look like something is
wrong, since files are "missing", when in fact it doesn't need those
files). I have to admit that the infomap-install script was something
of an afterthought, added during the packaging. All it does it copy
files from one directory to another... you can easily accomplish the
same thing by hand or with a script of your own.
Hope that helps,
Scott
On 8/25/06, Henry Ip [LIB] <lb...@in...> wrote:
>
>
>
> Dear Sir/Madam,
>
> Thank you very much for your advice.
> After a clean re-installation of the software Cygwin in my windows XP, I
> have succesfully install the infomap software and have a trial test.
> However, I have some questions below and may need help from you,
> I have already test with the following command, it works
> $ associate -t -c sf suit NOT lawsuit
> However, when i try to use the following command, the some files seem
> missing and i have capture the output as the "install_infomap_model.txt"
> $ infomap-install sf
>
> Also, I want to setup the web interface for this software,
> can you give me more details about this?
> E.g. Which package want, setup hints, or how to setup?
>
> Thanks for your help.
>
> Regards,
> Henry
>
>
|
|
From: Henry Ip [LIB] <lb...@in...> - 2006-08-25 07:58:05
|
lbsc@lbip ~/infomap_models/sf $ associate -t -c sf suit NOT lawsuit suit:1.000000 riddance:0.751650 roared:0.711744 succeedest:0.679556 millstones:0.672317 wasting:0.668496 awaketh:0.668073 twofold:0.662726 hivites:0.658278 entangled:0.645702 ordaineth:0.644492 pavilion:0.642435 gap:0.637306 safely:0.637098 wreathen:0.636576 woollen:0.633995 lendeth:0.633501 thresh:0.633468 woof:0.631634 idumea:0.626135 lbsc@lbip ~/infomap_models/sf $ infomap-install sf Using install control file "/usr/local/share/infomap-nlp/install.control" Missing file "word2offset.db". Missing file "offset2word.db". Missing file "number2name.db". Missing file "number2name.dir". Missing file "number2name.pag". Missing file "art2offset.db". Missing file "offset2art.db". |
|
From: David H. <dl...@st...> - 2006-08-17 16:44:32
|
>From your configuration log, it looks as though you're trying to use djgpp: c:/djgpp/bin/ld.exe Download cygwin: http://www.cygwin.com/ and do clean configure in that environment. HTH, -- David On 8/17/06, Henry Ip [LIB] <lb...@in...> wrote: > > > Dear Sir, > > I have tried to install the GDBM. However, it seems to have problems. > Is it related to the cygwin? Or any other issues? > > Please help. > Thanks, > Henry > > >>> Henry Ip [LIB] 17/8/2006 04:04 >>> > > > Dear Sir, > > Thanks for your promt response. > I decided to use Windows platform with Cygwin software. > I have try the configure but still have problems. It seems to be a missing > dbm. > Any suggestion for this kind of problems? > P.S. Please check the output file from my computer. > > Thanks, > Henry > > >>> Dominic Widdows <wi...@ma...> 16/8/2006 08:24 >>> > > Dear Henry, > > I hope we can help with some of these things, though it sounds as > though it will need some work. > > > Dear Sir/Madam, > > > > I am interested for the infomap project and I would like to > > launched the demo. > > However, I have difficulty when I am installing it. > > like checking whether we are cross compiling... no,checking for > > stdint.h... no etc. > > How can I solve these kind of problem and can successfully install > > the software. > > Is this the output from running "./configure"? I would expect headers > like "stdint.h" to come with gcc (I might be wrong). Did your > configure script find the gcc compiler successfully? > > It would help if you were to send the whole output from "./configure" > appended if you reply to this message. > > > Also, how can I associate the web server to the software, I cannot > > find it mention on the document. > > We recently added the Perl/CGI tools that you can use to set up a web > interface. However, you need to check them out from the CVS > repository, they're not part of the standard distribution, because > they aren't very portable at all yet - you'll have to figure out > pathnames, etc. The first time we added these people were having > trouble getting them from CVS, though I think that was to do with the > SourceForge CVS upgrade since it seems to have been working since. > > > Any windows version available? > > The Infomap software compiles under Windows using Cygwin (this has > generally worked pretty reliably). There is a Windows front end that > another contributor on the list made and kindly shared with other > users - I'll try and find it in the archive at some point though I > have to run now ;-) > > Best wishes, > Dominic > > > Thanks , > > Henry > > > ---------------------------------------------------------------------- > > --- > > Using Tomcat but need to do more? Need to support web services, > > security? > > Get stuff done quickly with pre-integrated technology to make your > > job easier > > Download IBM WebSphere Application Server v.1.0.1 based on Apache > > Geronimo > > http://sel.as-us.falkag.net/sel? > > > cmd=lnk&kid=120709&bid=263057&dat=121642______________________________ > > _________________ > > infomap-nlp-users mailing list > > inf...@li... > > > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > > > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job > easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > > _______________________________________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > > > > |
|
From: Tonio W. <ton...@un...> - 2006-08-17 13:30:30
|
Dear Henry, I just installed Infomap under a Windows/cygwin-environment, and it=20 worked without any complaints. I think you have tried installing gdbm independently from cygwin, so it=20 cannot be found at the expected paths. Try to re-setup cygwin. In the installation process you can choose the=20 packages to be installed. Check in "Base" or "Devel" if "gdbm" is=20 already selected, moreover check if the c (not only the c++) version of=20 gcc and "binutils" are selected. If this doesn't help, check if all paths are correct. I did not have to=20 modify anything, since I have installed cygwin at root (C:/), but this=20 is a probable source of problems. By the way, if you have to adapt any paths, do not use the colon (MAKE=20 does not process it correctly). For "C:" use "/cygdrive/c". Hope it helps! Good luck, Tonio inf...@li... wrote: > Send infomap-nlp-users mailing list submissions to > inf...@li... >=20 > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > or, via email, send a message with subject or body 'help' to > inf...@li... >=20 > You can reach the person managing the list at > inf...@li... >=20 > When replying, please edit your Subject line so it is more specific > than "Re: Contents of infomap-nlp-users digest..." >=20 >=20 > Today's Topics: >=20 > 1. Fwd: Re: Installation of infomap (Henry Ip [LIB]) > 2. Re: Fwd: Re: Installation of infomap (Dominic Widdows) >=20 >=20 > ---------------------------------------------------------------------- >=20 > Message: 1 > Date: Thu, 17 Aug 2006 16:47:43 +0800 > From: "Henry Ip [LIB]" <lb...@in...> > Subject: [infomap-nlp-users] Fwd: Re: Installation of infomap > To: inf...@li... > Message-ID: <200...@in...> > Content-Type: text/plain; charset=3D"big5" >=20 > Dear Sir,=20 >=20 > I have tried to install the GDBM. However, it seems to have problems. > Is it related to the cygwin? Or any other issues? >=20 > Please help. > Thanks, > Henry >=20 >>>> Henry Ip [LIB] 17/8/2006 04:04 >>> >=20 > Dear Sir, >=20 > Thanks for your promt response. > I decided to use Windows platform with Cygwin software.=20 > I have try the configure but still have problems. It seems to be a miss= ing dbm. > Any suggestion for this kind of problems? > P.S. Please check the output file from my computer. >=20 > Thanks, > Henry >=20 >>>> Dominic Widdows <wi...@ma...> 16/8/2006 08:24 >>> >=20 > Dear Henry, >=20 > I hope we can help with some of these things, though it sounds as =20 > though it will need some work. >=20 >> Dear Sir/Madam, >> >> I am interested for the infomap project and I would like to =20 >> launched the demo. >> However, I have difficulty when I am installing it. >> like checking whether we are cross compiling... no,checking for =20 >> stdint.h... no etc. >> How can I solve these kind of problem and can successfully install =20 >> the software. >=20 > Is this the output from running "./configure"? I would expect headers =20 > like "stdint.h" to come with gcc (I might be wrong). Did your =20 > configure script find the gcc compiler successfully? >=20 > It would help if you were to send the whole output from "./configure" =20 > appended if you reply to this message. >=20 >> Also, how can I associate the web server to the software, I cannot =20 >> find it mention on the document. >=20 > We recently added the Perl/CGI tools that you can use to set up a web =20 > interface. However, you need to check them out from the CVS =20 > repository, they're not part of the standard distribution, because =20 > they aren't very portable at all yet - you'll have to figure out =20 > pathnames, etc. The first time we added these people were having =20 > trouble getting them from CVS, though I think that was to do with the =20 > SourceForge CVS upgrade since it seems to have been working since. >=20 >> Any windows version available? >=20 > The Infomap software compiles under Windows using Cygwin (this has =20 > generally worked pretty reliably). There is a Windows front end that =20 > another contributor on the list made and kindly shared with other =20 > users - I'll try and find it in the archive at some point though I =20 > have to run now ;-) >=20 > Best wishes, > Dominic >=20 >> Thanks , >> Henry >> ----------------------------------------------------------------------= =20 >> --- >> Using Tomcat but need to do more? Need to support web services, =20 >> security? >> Get stuff done quickly with pre-integrated technology to make your =20 >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache =20 >> Geronimo >> http://sel.as-us.falkag.net/sel?=20 >> cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=3D121642______________________= ________=20 >> _________________ >> infomap-nlp-users mailing list >> inf...@li... >> https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users >> > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: http://sourceforge.net/mailarchive/forum.php?forum=3Dinfomap-nlp-u= sers/attachments/20060817/520be703/attachment.html=20 > -------------- next part -------------- > $ ./configure > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking for gcc... gcc > checking for C compiler default output file name... a.exe > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... .exe > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ANSI C... none needed > checking for style of include used by make... GNU > checking dependency style of gcc... gcc > checking how to run the C preprocessor... gcc -E > checking for a BSD-compatible install... /usr/bin/install -c > checking whether make sets $(MAKE)... (cached) yes > checking for sqrt in -lm... yes > checking for dbm_open in -lgdbm... no > checking for dbm_open in -lgdbm_compat... no > checking for egrep... grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... no > checking for stdint.h... no > checking for unistd.h... yes > checking fcntl.h usability... yes > checking fcntl.h presence... yes > checking for fcntl.h... yes > checking locale.h usability... yes > checking locale.h presence... yes > checking for locale.h... yes > checking for stdlib.h... (cached) yes > checking for string.h... (cached) yes > checking sys/file.h usability... yes > checking sys/file.h presence... yes > checking for sys/file.h... yes > checking sys/time.h usability... yes > checking sys/time.h presence... yes > checking for sys/time.h... yes > checking for unistd.h... (cached) yes > checking ndbm.h usability... no > checking ndbm.h presence... no > checking for ndbm.h... no > checking gdbm/ndbm.h usability... no > checking gdbm/ndbm.h presence... no > checking for gdbm/ndbm.h... no > configure: WARNING: configure has detected that you do not have an > appropriate ndbm header file installed on your > system. Compilation cannot proceed. Please in= stall > ndbm.h or gdbm/ndbm.h on your system, or write = to > inf...@li... for adv= ice. > checking for an ANSI C-conforming const... yes > checking for off_t... yes > checking for size_t... yes > checking for stdlib.h... (cached) yes > checking for GNU libc compatible malloc... yes > checking whether lstat dereferences a symlink specified with a trailing= slas > no > checking whether stat accepts an empty string... yes > checking for getcwd... yes > checking for memset... yes > checking for setlocale... yes > checking for sqrt... yes > checking for strchr... yes > checking for strdup... yes > checking for strstr... yes > checking for dbm_open... no > checking for dbm_close... no > checking for dbm_fetch... no > checking for dbm_store... no > configure: WARNING: configure could not find all of the necessary DBM f= uncti >=20 > (dbm_open, dbm_close, dbm_fetch, dbm_store). This pro= bably > means that configure could not find your DBM library, = or > that you do not have a DBM library installed. (See ab= ove > output for the results of library checks.) Please ins= tall > a DBM-compatible library (such as GNU DBM) or write to > inf...@li... for advice. > configure: error: One or more errors found (see output above for detail= s). > Configuration unsuccessful. > -------------- next part -------------- > lbsc@lbip ~/gdbm-1.8.3/gdbm-1.8.3 > $ ./configure > checking for gcc... gcc > checking for C compiler default output... a.exe > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... .exe > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ANSI C... none needed > checking how to run the C preprocessor... gcc -E > checking for a BSD-compatible install... /usr/bin/install -c > checking build system type... i686-pc-cygwin > checking host system type... i686-pc-cygwin > checking for ld used by GCC... c:/djgpp/bin/ld.exe > checking if the linker (c:/djgpp/bin/ld.exe) is GNU ld... yes > checking for c:/djgpp/bin/ld.exe option to reload object files... -r > checking for BSD-compatible nm... /cygdrive/c/djgpp/bin/nm -B > checking whether ln -s works... yes > checking how to recognise dependant libraries... file_magic file format= pei*-i3 > 6(.*architecture: i386)? > checking command to parse /cygdrive/c/djgpp/bin/nm -B output... failed > checking for egrep... grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... no > checking for stdint.h... no > checking for unistd.h... yes > checking dlfcn.h usability... no > checking dlfcn.h presence... no > checking for dlfcn.h... no > checking for ranlib... ranlib > checking for strip... strip > checking for objdir... .libs > checking for gcc option to produce PIC... -DDLL_EXPORT > checking if gcc PIC flag -DDLL_EXPORT works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.lo... yes > checking if gcc supports -fno-rtti -fno-exceptions... yes > checking whether the linker (c:/djgpp/bin/ld.exe) supports shared libra= ries... > es > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking dynamic linker characteristics... Win32 ld.exe > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > creating libtool > checking for an ANSI C-conforming const... yes > checking for stdlib.h... (cached) yes > checking for string.h... (cached) yes > checking sys/file.h usability... yes > checking sys/file.h presence... yes > checking for sys/file.h... yes > checking for unistd.h... (cached) yes > checking fcntl.h usability... yes > checking fcntl.h presence... yes > checking for fcntl.h... yes > checking for sys/types.h... (cached) yes > checking memory.y usability... no > checking memory.y presence... no > checking for memory.y... no > checking for main in -ldbm... no > checking for main in -lndbm... no > checking for rename... yes > checking for ftruncate... yes > checking for flock... no > checking for bcopy... yes > checking for fsync... yes > checking for getopt... yes > checking for off_t... yes > checking for struct stat.st_blksize... yes > configure: creating ./config.status > config.status: creating Makefile > config.status: creating autoconf.h > config.status: autoconf.h is unchanged >=20 >=20 > Then show the follow once i type the command "make" >=20 >=20 > lbsc@lbip ~/gdbm-1.8.3/gdbm-1.8.3 > $ make > C:/cygwin/bin/sh.exe ./libtool --mode=3Dcompile gcc -c -I. -I. -g -O2= gdbmopen.c >=20 > 6 [main] sh 2288 dtable::stdio_init: couldn't make stderr distinc= t from st > dout > rm -f .libs/gdbmopen.lo > gcc -c -I. -I. -g -O2 gdbmopen.c -DDLL_EXPORT -DPIC -o .libs/gdbmopen.= lo > Microsoft(R) Windows DOS > (C)Copyright Microsoft Corp 1990-2001. > gcc -c -I. -I. -g -O2 gdbmopen.c -o gdbmopen.o >/dev/null 2>&1 > mv -f .libs/gdbmopen.lo gdbmopen.lo > C:/cygwin/bin/sh.exe ./libtool --mode=3Dcompile gcc -c -I. -I. -g -O2= gdbmdelete > c > 5 [main] sh 112 dtable::stdio_init: couldn't make stderr distinct= from std > out > rm -f .libs/gdbmdelete.lo > gcc -c -I. -I. -g -O2 gdbmdelete.c -DDLL_EXPORT -DPIC -o .libs/gdbmdel= ete.lo > Microsoft(R) Windows DOS > (C)Copyright Microsoft Corp 1990-2001. > make.exe: *** [gdbmdelete.lo] Error 1 >=20 > ------------------------------ >=20 > Message: 2 > Date: Thu, 17 Aug 2006 08:48:30 -0400 > From: Dominic Widdows <wi...@ma...> > Subject: Re: [infomap-nlp-users] Fwd: Re: Installation of infomap > To: "Henry Ip [LIB]" <lb...@in...> > Cc: inf...@li... > Message-ID: <B86...@ma...> > Content-Type: text/plain; charset=3D"us-ascii" >=20 > Hi Henry, >=20 > I'm afraid you're getting beyond my competence here, though hopefully =20 > one of the more dedicated Windows / Cygwin users can help you out. I =20 > have only ever installed gdbm on Windows using the Cygwin package =20 > manager GUI, and it's generally "just worked" without my having to =20 > intervene at the command line. Have you tried the package manager? If =20 > you're missing uninstalled dependencies it should help. >=20 > Best wishes, > Dominic >=20 > On Aug 17, 2006, at 4:47 AM, Henry Ip [LIB] wrote: >=20 >> Dear Sir, >> >> I have tried to install the GDBM. However, it seems to have problems. >> Is it related to the cygwin? Or any other issues? >> >> Please help. >> Thanks, >> Henry >> >>>>> Henry Ip [LIB] 17/8/2006 04:04 >>> >> Dear Sir, >> >> Thanks for your promt response. >> I decided to use Windows platform with Cygwin software. >> I have try the configure but still have problems. It seems to be a =20 >> missing dbm. >> Any suggestion for this kind of problems? >> P.S. Please check the output file from my computer. >> >> Thanks, >> Henry >> >>>>> Dominic Widdows <wi...@ma...> 16/8/2006 08:24 >>> >> Dear Henry, >> >> I hope we can help with some of these things, though it sounds as >> though it will need some work. >> >>> Dear Sir/Madam, >>> >>> I am interested for the infomap project and I would like to >>> launched the demo. >>> However, I have difficulty when I am installing it. >>> like checking whether we are cross compiling... no,checking for >>> stdint.h... no etc. >>> How can I solve these kind of problem and can successfully install >>> the software. >> Is this the output from running "./configure"? I would expect headers >> like "stdint.h" to come with gcc (I might be wrong). Did your >> configure script find the gcc compiler successfully? >> >> It would help if you were to send the whole output from "./configure" >> appended if you reply to this message. >> >>> Also, how can I associate the web server to the software, I cannot >>> find it mention on the document. >> We recently added the Perl/CGI tools that you can use to set up a web >> interface. However, you need to check them out from the CVS >> repository, they're not part of the standard distribution, because >> they aren't very portable at all yet - you'll have to figure out >> pathnames, etc. The first time we added these people were having >> trouble getting them from CVS, though I think that was to do with the >> SourceForge CVS upgrade since it seems to have been working since. >> >>> Any windows version available? >> The Infomap software compiles under Windows using Cygwin (this has >> generally worked pretty reliably). There is a Windows front end that >> another contributor on the list made and kindly shared with other >> users - I'll try and find it in the archive at some point though I >> have to run now ;-) >> >> Best wishes, >> Dominic >> >>> Thanks , >>> Henry >>> =20 >> ---------------------------------------------------------------------- >>> --- >>> Using Tomcat but need to do more? Need to support web services, >>> security? >>> Get stuff done quickly with pre-integrated technology to make your >>> job easier >>> Download IBM WebSphere Application Server v.1.0.1 based on Apache >>> Geronimo >>> http://sel.as-us.falkag.net/sel? >>> =20 >> cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=3D121642______________________= ________ >>> _________________ >>> infomap-nlp-users mailing list >>> inf...@li... >>> https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users >>> >> <configure_output.txt> >> <configure_gdbm.txt> >> ----------------------------------------------------------------------= =20 >> --- >> Using Tomcat but need to do more? Need to support web services, =20 >> security? >> Get stuff done quickly with pre-integrated technology to make your =20 >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache =20 >> Geronimo >> http://sel.as-us.falkag.net/sel?=20 >> cmd=3Dlnk&kid=3D120709&bid=3D263057&dat=3D121642______________________= ________=20 >> _________________ >> infomap-nlp-users mailing list >> inf...@li... >> https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users >> >=20 > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: http://sourceforge.net/mailarchive/forum.php?forum=3Dinfomap-nlp-u= sers/attachments/20060817/4a05ca05/attachment.html=20 >=20 > ------------------------------ >=20 > -----------------------------------------------------------------------= -- > Using Tomcat but need to do more? Need to support web services, securit= y? > Get stuff done quickly with pre-integrated technology to make your job = easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geron= imo > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D120709&bid=3D263057&dat= =3D121642 >=20 > ------------------------------ >=20 > _______________________________________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users >=20 >=20 > End of infomap-nlp-users Digest, Vol 3, Issue 2 > *********************************************** >=20 >=20 --=20 Tonio Wandmacher Wiss. Mitarbeiter Institut f=FCr Kognitionswissenschaft FB K=FCnstliche Intelligenz Universit=E4t Osnabr=FCck Albrechtstra=DFe 28 D-49076 Osnabr=FCck Raum 31/450c Tel +49 (0)541 969-3391 E-Mail: ton...@un... |
|
From: Dominic W. <wi...@ma...> - 2006-08-17 12:48:39
|
Hi Henry, I'm afraid you're getting beyond my competence here, though hopefully one of the more dedicated Windows / Cygwin users can help you out. I have only ever installed gdbm on Windows using the Cygwin package manager GUI, and it's generally "just worked" without my having to intervene at the command line. Have you tried the package manager? If you're missing uninstalled dependencies it should help. Best wishes, Dominic On Aug 17, 2006, at 4:47 AM, Henry Ip [LIB] wrote: > Dear Sir, > > I have tried to install the GDBM. However, it seems to have problems. > Is it related to the cygwin? Or any other issues? > > Please help. > Thanks, > Henry > > >>> Henry Ip [LIB] 17/8/2006 04:04 >>> > Dear Sir, > > Thanks for your promt response. > I decided to use Windows platform with Cygwin software. > I have try the configure but still have problems. It seems to be a > missing dbm. > Any suggestion for this kind of problems? > P.S. Please check the output file from my computer. > > Thanks, > Henry > > >>> Dominic Widdows <wi...@ma...> 16/8/2006 08:24 >>> > Dear Henry, > > I hope we can help with some of these things, though it sounds as > though it will need some work. > > > Dear Sir/Madam, > > > > I am interested for the infomap project and I would like to > > launched the demo. > > However, I have difficulty when I am installing it. > > like checking whether we are cross compiling... no,checking for > > stdint.h... no etc. > > How can I solve these kind of problem and can successfully install > > the software. > > Is this the output from running "./configure"? I would expect headers > like "stdint.h" to come with gcc (I might be wrong). Did your > configure script find the gcc compiler successfully? > > It would help if you were to send the whole output from "./configure" > appended if you reply to this message. > > > Also, how can I associate the web server to the software, I cannot > > find it mention on the document. > > We recently added the Perl/CGI tools that you can use to set up a web > interface. However, you need to check them out from the CVS > repository, they're not part of the standard distribution, because > they aren't very portable at all yet - you'll have to figure out > pathnames, etc. The first time we added these people were having > trouble getting them from CVS, though I think that was to do with the > SourceForge CVS upgrade since it seems to have been working since. > > > Any windows version available? > > The Infomap software compiles under Windows using Cygwin (this has > generally worked pretty reliably). There is a Windows front end that > another contributor on the list made and kindly shared with other > users - I'll try and find it in the archive at some point though I > have to run now ;-) > > Best wishes, > Dominic > > > Thanks , > > Henry > > > ---------------------------------------------------------------------- > > --- > > Using Tomcat but need to do more? Need to support web services, > > security? > > Get stuff done quickly with pre-integrated technology to make your > > job easier > > Download IBM WebSphere Application Server v.1.0.1 based on Apache > > Geronimo > > http://sel.as-us.falkag.net/sel? > > > cmd=lnk&kid=120709&bid=263057&dat=121642______________________________ > > _________________ > > infomap-nlp-users mailing list > > inf...@li... > > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > > > > <configure_output.txt> > <configure_gdbm.txt> > ---------------------------------------------------------------------- > --- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel? > cmd=lnk&kid=120709&bid=263057&dat=121642______________________________ > _________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > |
|
From: Henry Ip [LIB] <lb...@in...> - 2006-08-17 08:45:05
|
$ ./configure
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gcc... gcc
checking for C compiler default output file name... a.exe
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... .exe
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for sqrt in -lm... yes
checking for dbm_open in -lgdbm... no
checking for dbm_open in -lgdbm_compat... no
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/file.h usability... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking ndbm.h usability... no
checking ndbm.h presence... no
checking for ndbm.h... no
checking gdbm/ndbm.h usability... no
checking gdbm/ndbm.h presence... no
checking for gdbm/ndbm.h... no
configure: WARNING: configure has detected that you do not have an
appropriate ndbm header file installed on your
system. Compilation cannot proceed. Please =
install
ndbm.h or gdbm/ndbm.h on your system, or write to
inf...@li... for =
advice.
checking for an ANSI C-conforming const... yes
checking for off_t... yes
checking for size_t... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking whether lstat dereferences a symlink specified with a trailing =
slas
no
checking whether stat accepts an empty string... yes
checking for getcwd... yes
checking for memset... yes
checking for setlocale... yes
checking for sqrt... yes
checking for strchr... yes
checking for strdup... yes
checking for strstr... yes
checking for dbm_open... no
checking for dbm_close... no
checking for dbm_fetch... no
checking for dbm_store... no
configure: WARNING: configure could not find all of the necessary DBM =
functi
(dbm_open, dbm_close, dbm_fetch, dbm_store). This =
probably
means that configure could not find your DBM library, or
that you do not have a DBM library installed. (See above
output for the results of library checks.) Please =
install
a DBM-compatible library (such as GNU DBM) or write to
inf...@li... for advice.
configure: error: One or more errors found (see output above for details).
Configuration unsuccessful.
|
|
From: Dominic W. <wi...@ma...> - 2006-08-16 12:24:08
|
Dear Henry, I hope we can help with some of these things, though it sounds as though it will need some work. > Dear Sir/Madam, > > I am interested for the infomap project and I would like to > launched the demo. > However, I have difficulty when I am installing it. > like checking whether we are cross compiling... no,checking for > stdint.h... no etc. > How can I solve these kind of problem and can successfully install > the software. Is this the output from running "./configure"? I would expect headers like "stdint.h" to come with gcc (I might be wrong). Did your configure script find the gcc compiler successfully? It would help if you were to send the whole output from "./configure" appended if you reply to this message. > Also, how can I associate the web server to the software, I cannot > find it mention on the document. We recently added the Perl/CGI tools that you can use to set up a web interface. However, you need to check them out from the CVS repository, they're not part of the standard distribution, because they aren't very portable at all yet - you'll have to figure out pathnames, etc. The first time we added these people were having trouble getting them from CVS, though I think that was to do with the SourceForge CVS upgrade since it seems to have been working since. > Any windows version available? The Infomap software compiles under Windows using Cygwin (this has generally worked pretty reliably). There is a Windows front end that another contributor on the list made and kindly shared with other users - I'll try and find it in the archive at some point though I have to run now ;-) Best wishes, Dominic > Thanks , > Henry > ---------------------------------------------------------------------- > --- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel? > cmd=lnk&kid=120709&bid=263057&dat=121642______________________________ > _________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > |
|
From: Henry Ip [LIB] <lb...@in...> - 2006-08-16 08:33:16
|
Dear Sir/Madam, I am interested for the infomap project and I would like to launched the = demo. However, I have difficulty when I am installing it. like checking whether we are cross compiling... no,checking for stdint.h...= no etc. How can I solve these kind of problem and can successfully install the = software. Also, how can I associate the web server to the software, I cannot find it = mention on the document. Any windows version available? Thanks , Henry |
|
From: Dominic W. <wi...@ma...> - 2006-07-22 01:11:56
|
Hi Felipe, There is a VALID_CHARS_FILE that you can set in the default-params. The default is admin/valid_chars.en that contains the string ABCDEFGHIJKLMNOPQRSTUVWXYZ_abcdefghijklmnopqrstuvwxyz~ You need to add the characters you want to this file, or create a new =20= one and tell default-params to look there. Hope this helps. Best wishes, Dominic On Jul 20, 2006, at 6:37 AM, Felipe S=E1nchez Mart=EDnez wrote: > Hi all, > > I have just started working around infomap-nlp, and I found out that > there is some kind of problem with non-ascii characters. When building = =20 > a > single model from a single file, the wordlist file containing the = whole > corpus with only one word per line shows things like the following: > > ... > uni > n > ... > > > while it should be just 'uni=F3n'. The system is splitting single = words =20 > by > non-ascii character like '=F3'. > > How can I solve this problem? > > Thank you very much in advance. > > Cheeers > -- =20 > Felipe S=E1nchez Mart=EDnez > ------------------------------------------------------------------- > Departamento de Lenguajes E-mail: fsa...@dl... > y Sistemas Inform=E1ticos Homepage: www.dlsi.ua.es/~fsanchez > Universidad de Alicante Fax: +34 965 90 93 26 > E-03071 Alicante (Spain) Phone: +34 965 90 34 00, ext: 2038 > > > > = -----------------------------------------------------------------------=20= > -- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to =20 > share your > opinions on IT & business topics through brief surveys -- and earn = cash > http://www.techsay.com/default.php?=20 > page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV > _______________________________________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > |
|
From: Felipe <fsa...@dl...> - 2006-07-20 10:35:08
|
Hi all, I have just started working around infomap-nlp, and I found out that there is some kind of problem with non-ascii characters. When building a single model from a single file, the wordlist file containing the whole corpus with only one word per line shows things like the following: ... uni n ... while it should be just 'uni=F3n'. The system is splitting single words b= y non-ascii character like '=F3'. How can I solve this problem? Thank you very much in advance. Cheeers --=20 Felipe S=E1nchez Mart=EDnez ------------------------------------------------------------------- Departamento de Lenguajes E-mail: fsa...@dl... y Sistemas Inform=E1ticos Homepage: www.dlsi.ua.es/~fsanchez Universidad de Alicante Fax: +34 965 90 93 26 E-03071 Alicante (Spain) Phone: +34 965 90 34 00, ext: 2038 |
|
From: Tonio W. <ton...@un...> - 2006-07-17 09:50:20
|
Hello, well, congratulations to your daughter, Dominic! I can deeply imagine tha= t you are now occupied by more important things than software maintenance... Thanks for your advice concerning my questions. Indeed, there is a built-in limit to 3000, and I did not dare to modify it. However, I don't see why, (using Michael Berry's GTP) I applied SVD to much larger matrice= s (~120.000 cols). I will try that out and I'll let you know about my results. Best wishes, Tonio > > Hi Tonio, David and Dominic, > > On Sat, 15 Jul 2006, Dominic Widdows wrote: > >> I agree with the solutions you posted below, couldn't have done better >> myself. It's possible to set COLUMNS in the default-params file, I >> don't know of any flag that prevents the number from being greater tha= n >> 2999. Nor do I know off hand whether the matrix format in memory is >> scalable enough to handle a full term-by-term matrix. But this is >> certainly the place to begin looking. > > The SVD interface sets a limit on the number of columns: > #define NMAX 3000 /* bound on ncol, order of A */ > (it's in infomap-nlp/svd/svdinterface/las2.c) > > I don't know whether this line is part of the original SVDPACKC > package (which was developed at the University of Tennesse and not by t= he > infomap project). It probably is. You can try increasing the limit and > see if the singular value decomposition is still successful. > > Good luck! > Beate > > --=20 Wissenschaftlicher Mitarbeiter Institut f=FCr Kognitionswissenschaft Universit=E4t Osnabr=FCck Raum 31/450c Albrechtstra=DFe 28 49076 Osnabr=FCck Tel: 0541/969-3391 |
|
From: Beate D. <do...@im...> - 2006-07-17 09:19:17
|
Hi Tonio, David and Dominic, On Sat, 15 Jul 2006, Dominic Widdows wrote: > I agree with the solutions you posted below, couldn't have done better > myself. It's possible to set COLUMNS in the default-params file, I > don't know of any flag that prevents the number from being greater than > 2999. Nor do I know off hand whether the matrix format in memory is > scalable enough to handle a full term-by-term matrix. But this is > certainly the place to begin looking. The SVD interface sets a limit on the number of columns: #define NMAX 3000 /* bound on ncol, order of A */ (it's in infomap-nlp/svd/svdinterface/las2.c) I don't know whether this line is part of the original SVDPACKC package (which was developed at the University of Tennesse and not by the infomap project). It probably is. You can try increasing the limit and see if the singular value decomposition is still successful. Good luck! Beate |
|
From: Dominic W. <wi...@ma...> - 2006-07-15 16:37:46
|
Thanks David for jumping in. I heartily encourage and appreciate people taking the Infomap software into their own hands and answering questions, and I'm sure the other original developers from the project at CSLI agree. My latest and greatest excuse for being too busy to devote much attention to maintaining the software is my one week old daughter Elinor, who is sitting on my knee as I scribble a frantic message. So my availability isn't going to be increasing any time soon, that's for sure! I agree with the solutions you posted below, couldn't have done better myself. It's possible to set COLUMNS in the default-params file, I don't know of any flag that prevents the number from being greater than 2999. Nor do I know off hand whether the matrix format in memory is scalable enough to handle a full term-by-term matrix. But this is certainly the place to begin looking. Good luck, and thanks for using the software and contributing any insight. Best wishes, Dominic On Jul 14, 2006, at 9:33 PM, David Hall wrote: > On 7/14/06, Tonio Wandmacher <ton...@un...> > wrote: >> first of all: Thank you very much for making your software available. >> It >> spares me a lot of work! >> I have two questions concerning the model construction. >> >> 1. Is there a switch to allow upper case characters without modifying >> the >> code? Even though I have "A-Z" included in valid.chars list, all >> words are >> transformed to lower case. > > Before I say anything, despite my email address, I'm not affiliated > with this project, so take everything I say with a grain of salt. That > said, if you look at > > preprocessing/tokenizer.c:249 (in some version...) you'll see a call > to "tolower", simply remove the call, and that should help you out. > Devs, if you read this, would there be interest in making this a > switch? I can try to write up a patch... > >> >> 2. Is there a reason why the maximum number of columns is set to 2999 >> ? I >> would like to try out squared termxterm matrices, as used by Reinhard >> Rapp >> (2003), who got excellent results in the TOEFL synonym test. >> Does anyone have experiences about the optimal number of columns? >> > > Have you looked at the default.params file? Otherwise, I don't know > exactly what's going on here. > > HTH, > David > > > ----------------------------------------------------------------------- > -- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your job > easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel? > cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > infomap-nlp-users mailing list > inf...@li... > https://lists.sourceforge.net/lists/listinfo/infomap-nlp-users > |
|
From: David H. <dl...@st...> - 2006-07-15 01:33:04
|
On 7/14/06, Tonio Wandmacher <ton...@un...> wrote: > first of all: Thank you very much for making your software available. It > spares me a lot of work! > I have two questions concerning the model construction. > > 1. Is there a switch to allow upper case characters without modifying the > code? Even though I have "A-Z" included in valid.chars list, all words are > transformed to lower case. Before I say anything, despite my email address, I'm not affiliated with this project, so take everything I say with a grain of salt. That said, if you look at preprocessing/tokenizer.c:249 (in some version...) you'll see a call to "tolower", simply remove the call, and that should help you out. Devs, if you read this, would there be interest in making this a switch? I can try to write up a patch... > > 2. Is there a reason why the maximum number of columns is set to 2999 ? I > would like to try out squared termxterm matrices, as used by Reinhard Rapp > (2003), who got excellent results in the TOEFL synonym test. > Does anyone have experiences about the optimal number of columns? > Have you looked at the default.params file? Otherwise, I don't know exactly what's going on here. HTH, David |
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From: Tonio W. <ton...@un...> - 2006-07-14 14:57:06
|
Hello, first of all: Thank you very much for making your software available. It spares me a lot of work! I have two questions concerning the model construction. 1. Is there a switch to allow upper case characters without modifying the code? Even though I have "A-Z" included in valid.chars list, all words are transformed to lower case. 2. Is there a reason why the maximum number of columns is set to 2999 ? I would like to try out squared termxterm matrices, as used by Reinhard Rapp (2003), who got excellent results in the TOEFL synonym test. Does anyone have experiences about the optimal number of columns? Thank you very much in advance ! Tonio |
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