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From: Kishore M. <kis...@gm...> - 2014-03-19 20:41:19
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Hi Arnaud, I am working on the GoFigure2 website: http://gofigure2.org/ Can you please advise on the contents under the Users and Developers tabs. Do we need the forums, search, and Jira tabs? Can we just move everything our of sourceforge into github? Kishore |
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From: Arnaud G. <arn...@gm...> - 2014-03-14 07:25:52
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Hi Kishore, c1132c2de2d25af66590c0b4e7327af71d7a58bc should fix the problem. Note that is has been merged onto master and develop. Thanks for providing nightly build ;) Best Arnaud On Mar 13, 2014, at 5:28 PM, Kishore Mosaliganti <kis...@gm...> wrote: > Hi Arnaud, > > I tried setting up CDash on my machine. It worked fine till the tests completed but encountered a "read error" at submission time. Nothing got reported on the dashboard. Here is the content of my script after modification from GoFigure2/Dashboard/Nightly/bonito : > > set( CTEST_SITE "whaleshark.med.harvard.edu" ) > set( CTEST_BUILD_NAME "Ubuntu13.10-x86_64-gcc4.8.1StaticDebug" ) > set( CTEST_BUILD_CONFIGURATION "Debug" ) > set( CTEST_CMAKE_GENERATOR "Unix Makefiles" ) > > set( CTEST_BUILD_FLAGS -j24 ) > set( CTEST_TEST_ARGS PARALLEL_LEVEL 2 ) > > #-------------------------------------------- > # Note about branches > # By default nightly builds use master > # and continuous ones use develop > #-------------------------------------------- > > # To specify the branch you want to test > # set dashboard_git_branch > set( dashboard_git_branch master ) > > set( dashboard_model Nightly ) > > set( CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}/${dashboard_git_branch}" ) > set( CTEST_SOURCE_DIRECTORY "/home/krm15/GITROOT/GoFigure2" ) > set( CTEST_BINARY_DIRECTORY "/home/krm15/bin/GITROOT/GoFigure2/static/debug" ) > > set( dashboard_cache " > VTK_DIR:PATH=/home/krm15/bin/GITROOT/vtkRel/static/debug/ > ITK_DIR:PATH=/home/krm15/bin/GITROOT/itk/static/debug/ > BUILD_EXAMPLES:BOOL=ON > BUILD_TESTING:BOOL=ON > QT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake-qt4 > " > ) > > set(ENV{DISPLAY} ":0") > > include(${CTEST_SCRIPT_DIRECTORY}/gofigure2_common.cmake) > > > Here is the output of the script (see error in red): > > Dashboard script configuration: > CTEST_SITE=[whaleshark.med.harvard.edu] > CTEST_BUILD_NAME=[Ubuntu13.10-x86_64-gcc4.8.1StaticRelease] > CTEST_SOURCE_DIRECTORY=[/home/krm15/GITROOT/GoFigure2] > CTEST_BINARY_DIRECTORY=[/home/krm15/bin/GITROOT/GoFigure2/static/release/] > CTEST_CMAKE_GENERATOR=[Unix Makefiles] > CTEST_BUILD_CONFIGURATION=[Release] > CTEST_GIT_COMMAND=[/usr/bin/git] > CTEST_CHECKOUT_COMMAND=[] > CTEST_SCRIPT_DIRECTORY=[/home/krm15/scripts] > CTEST_USE_LAUNCHERS=[1] > > > Clearing build tree... > Run dashboard with model Nightly > Source directory: /home/krm15/GITROOT/GoFigure2 > Build directory: /home/krm15/bin/GITROOT/GoFigure2/static/release/ > Reading ctest configuration file: /home/krm15/GITROOT/GoFigure2/CTestConfig.cmake > Site: whaleshark.med.harvard.edu > Build name: Ubuntu13.10-x86_64-gcc4.8.1StaticRelease > Determine Nightly Start Time > Specified time: 22:00:00 EST > Use Nightly tag: 20140313-0300 > Starting fresh build... > Updating the repository: /home/krm15/GITROOT/GoFigure2 > Use GIT repository type > Old revision of repository is: 9c0199a0361316bf8ed50940b3badde9b354bd9f > New revision of repository is: 9c0199a0361316bf8ed50940b3badde9b354bd9f > Gathering version information (one . per revision): > > Update command failed: "/usr/bin/git" "fetch" > Found 0 changed files > Configure project > Each . represents 1024 bytes of output > ... Size of output: 2K > Build project > Each symbol represents 1024 bytes of output. > .................................................. Size: 49K > .... Size of output: 53K > 0 Compiler errors > 0 Compiler warnings > Test project /home/krm15/bin/GITROOT/GoFigure2/static/release > Start 1: imageview2dTest > Start 2: imageview3dTest > 1/59 Test #1: imageview2dTest .................................. Passed 0.20 sec > Start 3: vtkviewimage3dtest > 2/59 Test #3: vtkviewimage3dtest ............................... Passed 0.24 sec > Start 4: imageviewcollectionTest > 3/59 Test #2: imageview3dTest .................................. Passed 0.75 sec > Start 5: SeedWidgetTest > 4/59 Test #4: imageviewcollectionTest .......................... Passed 0.78 sec > Start 6: ctkDoubleSliderTest1 > 5/59 Test #5: SeedWidgetTest ................................... Passed 0.80 sec > Start 7: ctkCollapsibleGroupBoxTest1 > 6/59 Test #7: ctkCollapsibleGroupBoxTest1 ......................***Failed 0.05 sec > Start 8: itkvtkPolyDatatoBinaryMaskImageFilterTest > 7/59 Test #8: itkvtkPolyDatatoBinaryMaskImageFilterTest ........ Passed 0.04 sec > Start 9: itkBinaryMaskImageToGoFigureMeshAttributesTest > 8/59 Test #9: itkBinaryMaskImageToGoFigureMeshAttributesTest ... Passed 0.04 sec > Start 10: itkvtkPolyDataToGoFigureMeshAttributesTest > 9/59 Test #10: itkvtkPolyDataToGoFigureMeshAttributesTest ....... Passed 0.04 sec > Start 11: ContourToMeshFilterTest > 10/59 Test #6: ctkDoubleSliderTest1 ............................. Passed 1.04 sec > Start 12: MeshToContourFilterTest > 11/59 Test #12: MeshToContourFilterTest .......................... Passed 0.10 sec > Start 13: itkvtkMeshSplitterDanielssonImageFilterTest > 12/59 Test #13: itkvtkMeshSplitterDanielssonImageFilterTest ......***Failed 0.30 sec > Start 14: itkvtkPolyDataToitkQuadEdgeMeshTest > 13/59 Test #14: itkvtkPolyDataToitkQuadEdgeMeshTest .............. Passed 0.10 sec > Start 15: itkvtkMeshMergeConvexHullFilterTest > 14/59 Test #15: itkvtkMeshMergeConvexHullFilterTest ..............***Failed 0.10 sec > Start 16: gofigurefileinfomultiindexcontainerhelperTest > 15/59 Test #16: gofigurefileinfomultiindexcontainerhelperTest .... Passed 0.10 sec > Start 17: vtkPolyDataMySQLContourReaderTest > 16/59 Test #17: vtkPolyDataMySQLContourReaderTest ................ Passed 0.10 sec > Start 18: vtkPolyDataMySQLMeshReaderTest > 17/59 Test #18: vtkPolyDataMySQLMeshReaderTest ................... Passed 0.10 sec > Start 19: vtkPolyDataMySQLTrackTest > 18/59 Test #19: vtkPolyDataMySQLTrackTest ........................ Passed 0.10 sec > Start 20: vtkPolyDataMySQLContourWriterTest > 19/59 Test #20: vtkPolyDataMySQLContourWriterTest ................ Passed 0.10 sec > Start 21: vtkPolyDataMySQLMeshWriterTest > 20/59 Test #21: vtkPolyDataMySQLMeshWriterTest ................... Passed 0.10 sec > Start 22: MegaCaptureHeaderReaderTest > 21/59 Test #22: MegaCaptureHeaderReaderTest ...................... Passed 0.10 sec > Start 23: lsmtomegacaptureTest > 22/59 Test #23: lsmtomegacaptureTest ............................. Passed 0.50 sec > Start 24: GoDBTraceRowTest > 23/59 Test #24: GoDBTraceRowTest ................................. Passed 0.10 sec > Start 25: GoDBContourRowTest > 24/59 Test #25: GoDBContourRowTest ............................... Passed 0.10 sec > Start 26: GoDBMeshRowTest > 25/59 Test #26: GoDBMeshRowTest .................................. Passed 0.10 sec > Start 27: GoDBTrackRowTest > 26/59 Test #27: GoDBTrackRowTest ................................. Passed 0.10 sec > Start 28: GoDBLineageRowTest > 27/59 Test #28: GoDBLineageRowTest ............................... Passed 0.10 sec > Start 29: GoDBColorRowTest > 28/59 Test #29: GoDBColorRowTest ................................. Passed 0.10 sec > Start 30: GoDBChannelRowTest > 29/59 Test #30: GoDBChannelRowTest ............................... Passed 0.10 sec > Start 31: GoDBBookmarkRowTest > 30/59 Test #31: GoDBBookmarkRowTest .............................. Passed 0.10 sec > Start 32: GoDBImageRowTest > 31/59 Test #32: GoDBImageRowTest ................................. Passed 0.10 sec > Start 33: GoDBIntensityRowTest > 32/59 Test #33: GoDBIntensityRowTest ............................. Passed 0.10 sec > Start 34: GoDBProjectRowTest > 33/59 Test #34: GoDBProjectRowTest ............................... Passed 0.10 sec > Start 35: GoDBCoordinateRowTest > 34/59 Test #35: GoDBCoordinateRowTest ............................ Passed 0.10 sec > Start 36: GoDBImgSessionRowTest > 35/59 Test #36: GoDBImgSessionRowTest ............................ Passed 0.10 sec > Start 37: qgoimageview2dTest > 36/59 Test #37: qgoimageview2dTest ...............................***Exception: Other 1.90 sec > Start 38: qgoimageview3dTest > 37/59 Test #11: ContourToMeshFilterTest .......................... Passed 7.00 sec > Start 39: QGoImageInfoTest > 38/59 Test #39: QGoImageInfoTest ................................. Passed 0.57 sec > Start 40: qgolutdialogTest > 39/59 Test #38: qgoimageview3dTest ............................... Passed 2.27 sec > Start 41: qgotabelementbaseTest > 40/59 Test #41: qgotabelementbaseTest ............................ Passed 0.02 sec > Start 42: qgotabimageviewelementbaseTest > 41/59 Test #42: qgotabimageviewelementbaseTest ................... Passed 0.23 sec > Start 43: qgotabimageview2dTest > 42/59 Test #40: qgolutdialogTest ................................. Passed 1.26 sec > Start 44: qgotabimageview3dTest > 43/59 Test #43: qgotabimageview2dTest ............................***Exception: Other 1.39 sec > Start 45: qgotabimageview3dwtTest > 44/59 Test #45: qgotabimageview3dwtTest ..........................***Exception: SegFault 0.42 sec > Start 46: qgomanualsegmentationsettingsdialogTest > 45/59 Test #44: qgotabimageview3dTest ............................ Passed 1.81 sec > Start 47: qgonavigationdockwidgetTest > 46/59 Test #47: qgonavigationdockwidgetTest ...................... Passed 0.16 sec > Start 48: QGoContourManualSegmentationDockWidgetTest > 47/59 Test #48: QGoContourManualSegmentationDockWidgetTest ....... Passed 0.30 sec > Start 49: ContourMeshContainerTest > 48/59 Test #46: qgomanualsegmentationsettingsdialogTest .......... Passed 1.17 sec > Start 50: QGoLsmToMegaExportDialogTest > 49/59 Test #49: ContourMeshContainerTest .........................***Exception: SegFault 0.45 sec > Start 51: QGoLsmToMegaExportThreadTest > 50/59 Test #50: QGoLsmToMegaExportDialogTest ..................... Passed 1.15 sec > Start 52: QGoWizardDBTest > 51/59 Test #52: QGoWizardDBTest .................................. Passed 0.05 sec > Start 53: QGoPrintDatabaseTest > 52/59 Test #51: QGoLsmToMegaExportThreadTest ..................... Passed 2.16 sec > Start 54: QGoDBCreateBookmarkDialogTest > 53/59 Test #53: QGoPrintDatabaseTest ............................. Passed 1.05 sec > Start 55: qgotabimageview3dwtTest2 > 54/59 Test #54: QGoDBCreateBookmarkDialogTest .................... Passed 1.04 sec > Start 56: QGoLevelset2DTest > 55/59 Test #56: QGoLevelset2DTest ................................ Passed 0.10 sec > Start 57: QGoDBInitCreateAuthorPageTest > 56/59 Test #55: qgotabimageview3dwtTest2 ......................... Passed 2.12 sec > 57/59 Test #57: QGoDBInitCreateAuthorPageTest .................... Passed 1.04 sec > Start 58: QGoDBInitCreateMicroscopePageTest > Start 59: QGoSegmentationAlgoTest > 58/59 Test #58: QGoDBInitCreateMicroscopePageTest ................ Passed 1.06 sec > 59/59 Test #59: QGoSegmentationAlgoTest ..........................***Timeout 1500.02 sec > > 86% tests passed, 8 tests failed out of 59 > > Total Test time (real) = 1518.33 sec > > The following tests FAILED: > 7 - ctkCollapsibleGroupBoxTest1 (Failed) > 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) > 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) > 37 - qgoimageview2dTest (OTHER_FAULT) > 43 - qgotabimageview2dTest (OTHER_FAULT) > 45 - qgotabimageview3dwtTest (SEGFAULT) > 49 - ContourMeshContainerTest (SEGFAULT) > 59 - QGoSegmentationAlgoTest (Timeout) > Add file: /home/krm15/scripts/gf2_master_static_release.cmake > Add file: /home/krm15/scripts/gofigure2_common.cmake > Submit files (using http) > Using HTTP submit method > Drop site:http://www.gofigure2.org/CDash/submit.php?project=GoFigure2 > Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Build.xml > Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Configure.xml > Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Notes.xml > Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Test.xml > Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Update.xml > Submission successful > Error in read script: /home/krm15/scripts/gf2_master_static_release.cmake > > > Any idea how I can debug this error? > > Kishore > > > > > On Thu, Mar 13, 2014 at 3:41 AM, Arnaud Gelas <arn...@gm...> wrote: > Hi Kishore, > > I have merged release_candidate onto develop and onto master. So now your fixes are available on these 2 branches! > I have also kept the release_candidate branch for other fixes before the official release. > > Thanks for fixing these issues!! > > Best > Arnaud > > On Mar 12, 2014, at 7:20 PM, Kishore Mosaliganti <kis...@gm...> wrote: > >> Hi Arnaud, >> >> Sorry, I think I used the develop branch. Master branch works fine. >> >> Can you cherry-pick the CDash bug fixes into the develop branch as well? >> >> Kishore >> >> >> On Wed, Mar 12, 2014 at 1:46 PM, Kishore Mosaliganti <kis...@gm...> wrote: >> Hi Arnaud, >> >> When I submit my ctest results to the dashboard, it doesn't show up on the server. Is the GoFigure2 project active on the CDash server? >> >> I am looking at the following page: >> http://gofigure2.org/CDash/index.php?project=GoFigure2 >> >> >> >> Just as reference, we have the following tests failing on my machine >> >> 7 - ctkCollapsibleGroupBoxTest1 (Failed) >> 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) >> 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) >> 37 - qgoimageview2dTest (OTHER_FAULT) >> 43 - qgotabimageview2dTest (OTHER_FAULT) >> 45 - qgotabimageview3dwtTest (OTHER_FAULT) >> 49 - ContourMeshContainerTest (SEGFAULT) >> 59 - QGoSegmentationAlgoTest (Failed) >> >> >> Kishore >> >> ------------------------------------------------------------------------------ >> Learn Graph Databases - Download FREE O'Reilly Book >> "Graph Databases" is the definitive new guide to graph databases and their >> applications. Written by three acclaimed leaders in the field, >> this first edition is now available. Download your free book today! >> http://p.sf.net/sfu/13534_NeoTech_______________________________________________ >> GoFigure2-developers mailing list >> GoF...@li... >> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > |
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From: Kishore M. <kis...@gm...> - 2014-03-13 16:28:20
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Hi Arnaud, I tried setting up CDash on my machine. It worked fine till the tests completed but encountered a "read error" at submission time. Nothing got reported on the dashboard. Here is the content of my script after modification from GoFigure2/Dashboard/Nightly/bonito : set( CTEST_SITE "whaleshark.med.harvard.edu" ) set( CTEST_BUILD_NAME "Ubuntu13.10-x86_64-gcc4.8.1StaticDebug" ) set( CTEST_BUILD_CONFIGURATION "Debug" ) set( CTEST_CMAKE_GENERATOR "Unix Makefiles" ) set( CTEST_BUILD_FLAGS -j24 ) set( CTEST_TEST_ARGS PARALLEL_LEVEL 2 ) #-------------------------------------------- # Note about branches # By default nightly builds use master # and continuous ones use develop #-------------------------------------------- # To specify the branch you want to test # set dashboard_git_branch set( dashboard_git_branch master ) set( dashboard_model Nightly ) set( CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}/${dashboard_git_branch}" ) set( CTEST_SOURCE_DIRECTORY "/home/krm15/GITROOT/GoFigure2" ) set( CTEST_BINARY_DIRECTORY "/home/krm15/bin/GITROOT/GoFigure2/static/debug" ) set( dashboard_cache " VTK_DIR:PATH=/home/krm15/bin/GITROOT/vtkRel/static/debug/ ITK_DIR:PATH=/home/krm15/bin/GITROOT/itk/static/debug/ BUILD_EXAMPLES:BOOL=ON BUILD_TESTING:BOOL=ON QT_QMAKE_EXECUTABLE:FILEPATH=/usr/bin/qmake-qt4 " ) set(ENV{DISPLAY} ":0") include(${CTEST_SCRIPT_DIRECTORY}/gofigure2_common.cmake) Here is the output of the script (see error in red): Dashboard script configuration: CTEST_SITE=[whaleshark.med.harvard.edu] CTEST_BUILD_NAME=[Ubuntu13.10-x86_64-gcc4.8.1StaticRelease] CTEST_SOURCE_DIRECTORY=[/home/krm15/GITROOT/GoFigure2] CTEST_BINARY_DIRECTORY=[/home/krm15/bin/GITROOT/GoFigure2/static/release/] CTEST_CMAKE_GENERATOR=[Unix Makefiles] CTEST_BUILD_CONFIGURATION=[Release] CTEST_GIT_COMMAND=[/usr/bin/git] CTEST_CHECKOUT_COMMAND=[] CTEST_SCRIPT_DIRECTORY=[/home/krm15/scripts] CTEST_USE_LAUNCHERS=[1] Clearing build tree... Run dashboard with model Nightly Source directory: /home/krm15/GITROOT/GoFigure2 Build directory: /home/krm15/bin/GITROOT/GoFigure2/static/release/ Reading ctest configuration file: /home/krm15/GITROOT/GoFigure2/CTestConfig.cmake Site: whaleshark.med.harvard.edu Build name: Ubuntu13.10-x86_64-gcc4.8.1StaticRelease Determine Nightly Start Time Specified time: 22:00:00 EST Use Nightly tag: 20140313-0300 Starting fresh build... Updating the repository: /home/krm15/GITROOT/GoFigure2 Use GIT repository type Old revision of repository is: 9c0199a0361316bf8ed50940b3badde9b354bd9f New revision of repository is: 9c0199a0361316bf8ed50940b3badde9b354bd9f Gathering version information (one . per revision): Update command failed: "/usr/bin/git" "fetch" Found 0 changed files Configure project Each . represents 1024 bytes of output ... Size of output: 2K Build project Each symbol represents 1024 bytes of output. .................................................. Size: 49K .... Size of output: 53K 0 Compiler errors 0 Compiler warnings Test project /home/krm15/bin/GITROOT/GoFigure2/static/release Start 1: imageview2dTest Start 2: imageview3dTest 1/59 Test #1: imageview2dTest .................................. Passed 0.20 sec Start 3: vtkviewimage3dtest 2/59 Test #3: vtkviewimage3dtest ............................... Passed 0.24 sec Start 4: imageviewcollectionTest 3/59 Test #2: imageview3dTest .................................. Passed 0.75 sec Start 5: SeedWidgetTest 4/59 Test #4: imageviewcollectionTest .......................... Passed 0.78 sec Start 6: ctkDoubleSliderTest1 5/59 Test #5: SeedWidgetTest ................................... Passed 0.80 sec Start 7: ctkCollapsibleGroupBoxTest1 6/59 Test #7: ctkCollapsibleGroupBoxTest1 ......................***Failed 0.05 sec Start 8: itkvtkPolyDatatoBinaryMaskImageFilterTest 7/59 Test #8: itkvtkPolyDatatoBinaryMaskImageFilterTest ........ Passed 0.04 sec Start 9: itkBinaryMaskImageToGoFigureMeshAttributesTest 8/59 Test #9: itkBinaryMaskImageToGoFigureMeshAttributesTest ... Passed 0.04 sec Start 10: itkvtkPolyDataToGoFigureMeshAttributesTest 9/59 Test #10: itkvtkPolyDataToGoFigureMeshAttributesTest ....... Passed 0.04 sec Start 11: ContourToMeshFilterTest 10/59 Test #6: ctkDoubleSliderTest1 ............................. Passed 1.04 sec Start 12: MeshToContourFilterTest 11/59 Test #12: MeshToContourFilterTest .......................... Passed 0.10 sec Start 13: itkvtkMeshSplitterDanielssonImageFilterTest 12/59 Test #13: itkvtkMeshSplitterDanielssonImageFilterTest ......***Failed 0.30 sec Start 14: itkvtkPolyDataToitkQuadEdgeMeshTest 13/59 Test #14: itkvtkPolyDataToitkQuadEdgeMeshTest .............. Passed 0.10 sec Start 15: itkvtkMeshMergeConvexHullFilterTest 14/59 Test #15: itkvtkMeshMergeConvexHullFilterTest ..............***Failed 0.10 sec Start 16: gofigurefileinfomultiindexcontainerhelperTest 15/59 Test #16: gofigurefileinfomultiindexcontainerhelperTest .... Passed 0.10 sec Start 17: vtkPolyDataMySQLContourReaderTest 16/59 Test #17: vtkPolyDataMySQLContourReaderTest ................ Passed 0.10 sec Start 18: vtkPolyDataMySQLMeshReaderTest 17/59 Test #18: vtkPolyDataMySQLMeshReaderTest ................... Passed 0.10 sec Start 19: vtkPolyDataMySQLTrackTest 18/59 Test #19: vtkPolyDataMySQLTrackTest ........................ Passed 0.10 sec Start 20: vtkPolyDataMySQLContourWriterTest 19/59 Test #20: vtkPolyDataMySQLContourWriterTest ................ Passed 0.10 sec Start 21: vtkPolyDataMySQLMeshWriterTest 20/59 Test #21: vtkPolyDataMySQLMeshWriterTest ................... Passed 0.10 sec Start 22: MegaCaptureHeaderReaderTest 21/59 Test #22: MegaCaptureHeaderReaderTest ...................... Passed 0.10 sec Start 23: lsmtomegacaptureTest 22/59 Test #23: lsmtomegacaptureTest ............................. Passed 0.50 sec Start 24: GoDBTraceRowTest 23/59 Test #24: GoDBTraceRowTest ................................. Passed 0.10 sec Start 25: GoDBContourRowTest 24/59 Test #25: GoDBContourRowTest ............................... Passed 0.10 sec Start 26: GoDBMeshRowTest 25/59 Test #26: GoDBMeshRowTest .................................. Passed 0.10 sec Start 27: GoDBTrackRowTest 26/59 Test #27: GoDBTrackRowTest ................................. Passed 0.10 sec Start 28: GoDBLineageRowTest 27/59 Test #28: GoDBLineageRowTest ............................... Passed 0.10 sec Start 29: GoDBColorRowTest 28/59 Test #29: GoDBColorRowTest ................................. Passed 0.10 sec Start 30: GoDBChannelRowTest 29/59 Test #30: GoDBChannelRowTest ............................... Passed 0.10 sec Start 31: GoDBBookmarkRowTest 30/59 Test #31: GoDBBookmarkRowTest .............................. Passed 0.10 sec Start 32: GoDBImageRowTest 31/59 Test #32: GoDBImageRowTest ................................. Passed 0.10 sec Start 33: GoDBIntensityRowTest 32/59 Test #33: GoDBIntensityRowTest ............................. Passed 0.10 sec Start 34: GoDBProjectRowTest 33/59 Test #34: GoDBProjectRowTest ............................... Passed 0.10 sec Start 35: GoDBCoordinateRowTest 34/59 Test #35: GoDBCoordinateRowTest ............................ Passed 0.10 sec Start 36: GoDBImgSessionRowTest 35/59 Test #36: GoDBImgSessionRowTest ............................ Passed 0.10 sec Start 37: qgoimageview2dTest 36/59 Test #37: qgoimageview2dTest ...............................***Exception: Other 1.90 sec Start 38: qgoimageview3dTest 37/59 Test #11: ContourToMeshFilterTest .......................... Passed 7.00 sec Start 39: QGoImageInfoTest 38/59 Test #39: QGoImageInfoTest ................................. Passed 0.57 sec Start 40: qgolutdialogTest 39/59 Test #38: qgoimageview3dTest ............................... Passed 2.27 sec Start 41: qgotabelementbaseTest 40/59 Test #41: qgotabelementbaseTest ............................ Passed 0.02 sec Start 42: qgotabimageviewelementbaseTest 41/59 Test #42: qgotabimageviewelementbaseTest ................... Passed 0.23 sec Start 43: qgotabimageview2dTest 42/59 Test #40: qgolutdialogTest ................................. Passed 1.26 sec Start 44: qgotabimageview3dTest 43/59 Test #43: qgotabimageview2dTest ............................***Exception: Other 1.39 sec Start 45: qgotabimageview3dwtTest 44/59 Test #45: qgotabimageview3dwtTest ..........................***Exception: SegFault 0.42 sec Start 46: qgomanualsegmentationsettingsdialogTest 45/59 Test #44: qgotabimageview3dTest ............................ Passed 1.81 sec Start 47: qgonavigationdockwidgetTest 46/59 Test #47: qgonavigationdockwidgetTest ...................... Passed 0.16 sec Start 48: QGoContourManualSegmentationDockWidgetTest 47/59 Test #48: QGoContourManualSegmentationDockWidgetTest ....... Passed 0.30 sec Start 49: ContourMeshContainerTest 48/59 Test #46: qgomanualsegmentationsettingsdialogTest .......... Passed 1.17 sec Start 50: QGoLsmToMegaExportDialogTest 49/59 Test #49: ContourMeshContainerTest .........................***Exception: SegFault 0.45 sec Start 51: QGoLsmToMegaExportThreadTest 50/59 Test #50: QGoLsmToMegaExportDialogTest ..................... Passed 1.15 sec Start 52: QGoWizardDBTest 51/59 Test #52: QGoWizardDBTest .................................. Passed 0.05 sec Start 53: QGoPrintDatabaseTest 52/59 Test #51: QGoLsmToMegaExportThreadTest ..................... Passed 2.16 sec Start 54: QGoDBCreateBookmarkDialogTest 53/59 Test #53: QGoPrintDatabaseTest ............................. Passed 1.05 sec Start 55: qgotabimageview3dwtTest2 54/59 Test #54: QGoDBCreateBookmarkDialogTest .................... Passed 1.04 sec Start 56: QGoLevelset2DTest 55/59 Test #56: QGoLevelset2DTest ................................ Passed 0.10 sec Start 57: QGoDBInitCreateAuthorPageTest 56/59 Test #55: qgotabimageview3dwtTest2 ......................... Passed 2.12 sec 57/59 Test #57: QGoDBInitCreateAuthorPageTest .................... Passed 1.04 sec Start 58: QGoDBInitCreateMicroscopePageTest Start 59: QGoSegmentationAlgoTest 58/59 Test #58: QGoDBInitCreateMicroscopePageTest ................ Passed 1.06 sec 59/59 Test #59: QGoSegmentationAlgoTest ..........................***Timeout 1500.02 sec 86% tests passed, 8 tests failed out of 59 Total Test time (real) = 1518.33 sec The following tests FAILED: 7 - ctkCollapsibleGroupBoxTest1 (Failed) 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) 37 - qgoimageview2dTest (OTHER_FAULT) 43 - qgotabimageview2dTest (OTHER_FAULT) 45 - qgotabimageview3dwtTest (SEGFAULT) 49 - ContourMeshContainerTest (SEGFAULT) 59 - QGoSegmentationAlgoTest (Timeout) Add file: /home/krm15/scripts/gf2_master_static_release.cmake Add file: /home/krm15/scripts/gofigure2_common.cmake Submit files (using http) Using HTTP submit method Drop site:http://www.gofigure2.org/CDash/submit.php?project=GoFigure2 Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Build.xml Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Configure.xml Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Notes.xml Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Test.xml Uploaded: /home/krm15/bin/GITROOT/GoFigure2/static/release/Testing/20140313-0300/Update.xml Submission successful Error in read script: /home/krm15/scripts/gf2_master_static_release.cmake Any idea how I can debug this error? Kishore On Thu, Mar 13, 2014 at 3:41 AM, Arnaud Gelas <arn...@gm...> wrote: > Hi Kishore, > > I have merged release_candidate onto develop and onto master. So now your > fixes are available on these 2 branches! > I have also kept the release_candidate branch for other fixes before the > official release. > > Thanks for fixing these issues!! > > Best > Arnaud > > On Mar 12, 2014, at 7:20 PM, Kishore Mosaliganti <kis...@gm...> > wrote: > > Hi Arnaud, > > Sorry, I think I used the develop branch. Master branch works fine. > > Can you cherry-pick the CDash bug fixes into the develop branch as well? > > Kishore > > > On Wed, Mar 12, 2014 at 1:46 PM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> Hi Arnaud, >> >> When I submit my ctest results to the dashboard, it doesn't show up on >> the server. Is the GoFigure2 project active on the CDash server? >> >> I am looking at the following page: >> http://gofigure2.org/CDash/index.php?project=GoFigure2 >> >> >> >> Just as reference, we have the following tests failing on my machine >> >> 7 - ctkCollapsibleGroupBoxTest1 (Failed) >> 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) >> 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) >> 37 - qgoimageview2dTest (OTHER_FAULT) >> 43 - qgotabimageview2dTest (OTHER_FAULT) >> 45 - qgotabimageview3dwtTest (OTHER_FAULT) >> 49 - ContourMeshContainerTest (SEGFAULT) >> 59 - QGoSegmentationAlgoTest (Failed) >> >> >> Kishore >> > > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > > http://p.sf.net/sfu/13534_NeoTech_______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > > |
|
From: Arnaud G. <arn...@gm...> - 2014-03-13 07:39:27
|
Hi Kishore, I have merged release_candidate onto develop and onto master. So now your fixes are available on these 2 branches! I have also kept the release_candidate branch for other fixes before the official release. Thanks for fixing these issues!! Best Arnaud On Mar 12, 2014, at 7:20 PM, Kishore Mosaliganti <kis...@gm...> wrote: > Hi Arnaud, > > Sorry, I think I used the develop branch. Master branch works fine. > > Can you cherry-pick the CDash bug fixes into the develop branch as well? > > Kishore > > > On Wed, Mar 12, 2014 at 1:46 PM, Kishore Mosaliganti <kis...@gm...> wrote: > Hi Arnaud, > > When I submit my ctest results to the dashboard, it doesn't show up on the server. Is the GoFigure2 project active on the CDash server? > > I am looking at the following page: > http://gofigure2.org/CDash/index.php?project=GoFigure2 > > > > Just as reference, we have the following tests failing on my machine > > 7 - ctkCollapsibleGroupBoxTest1 (Failed) > 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) > 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) > 37 - qgoimageview2dTest (OTHER_FAULT) > 43 - qgotabimageview2dTest (OTHER_FAULT) > 45 - qgotabimageview3dwtTest (OTHER_FAULT) > 49 - ContourMeshContainerTest (SEGFAULT) > 59 - QGoSegmentationAlgoTest (Failed) > > > Kishore > > ------------------------------------------------------------------------------ > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases and their > applications. Written by three acclaimed leaders in the field, > this first edition is now available. Download your free book today! > http://p.sf.net/sfu/13534_NeoTech_______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers |
|
From: Kishore M. <kis...@gm...> - 2014-03-12 18:20:08
|
Hi Arnaud, Sorry, I think I used the develop branch. Master branch works fine. Can you cherry-pick the CDash bug fixes into the develop branch as well? Kishore On Wed, Mar 12, 2014 at 1:46 PM, Kishore Mosaliganti <kis...@gm...>wrote: > Hi Arnaud, > > When I submit my ctest results to the dashboard, it doesn't show up on the > server. Is the GoFigure2 project active on the CDash server? > > I am looking at the following page: > http://gofigure2.org/CDash/index.php?project=GoFigure2 > > > > Just as reference, we have the following tests failing on my machine > > 7 - ctkCollapsibleGroupBoxTest1 (Failed) > 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) > 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) > 37 - qgoimageview2dTest (OTHER_FAULT) > 43 - qgotabimageview2dTest (OTHER_FAULT) > 45 - qgotabimageview3dwtTest (OTHER_FAULT) > 49 - ContourMeshContainerTest (SEGFAULT) > 59 - QGoSegmentationAlgoTest (Failed) > > > Kishore > |
|
From: Kishore M. <kis...@gm...> - 2014-03-12 17:46:21
|
Hi Arnaud, When I submit my ctest results to the dashboard, it doesn't show up on the server. Is the GoFigure2 project active on the CDash server? I am looking at the following page: http://gofigure2.org/CDash/index.php?project=GoFigure2 Just as reference, we have the following tests failing on my machine 7 - ctkCollapsibleGroupBoxTest1 (Failed) 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) 37 - qgoimageview2dTest (OTHER_FAULT) 43 - qgotabimageview2dTest (OTHER_FAULT) 45 - qgotabimageview3dwtTest (OTHER_FAULT) 49 - ContourMeshContainerTest (SEGFAULT) 59 - QGoSegmentationAlgoTest (Failed) Kishore |
|
From: Arnaud G. <arn...@gm...> - 2014-01-29 07:34:39
|
Hi Kishore, I have checked on debian, there is no stable package for itk4 yet; however there are for itk3. It's still possible to use gofigure2 with itk3… Note that I added one option to choose in between ITKv3 and ITKv4, see https://github.com/gofigure2/GoFigure2/commit/fc49dc8d5868c614718f3823ecf1d0f9b515efc1 Best, Arnaud On Jan 28, 2014, at 4:47 PM, Kishore Mosaliganti <kis...@gm...> wrote: > In the previous email, I meant GoFigure2 compiled in Superbuild mode and normal mode successfully. I built it against Boost 1.49.0. > > However, in the superbuild, GoFigure2 is using ITK version 3.20.1 although the develop branch was moved to ITKv4 framework. Do you know why this is happening? > > Kishore > > > On Tue, Jan 28, 2014 at 10:34 AM, Kishore Mosaliganti <kis...@gm...> wrote: > Hi Arnaud, > > After the superbuild fixes, GoFigure2 compiled without warnings on my Ubuntu 13.10 machine. The following tests are failing: > > 7 - ctkCollapsibleGroupBoxTest1 (Failed) > 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) > 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) > 37 - qgoimageview2dTest (OTHER_FAULT) > 43 - qgotabimageview2dTest (OTHER_FAULT) > 45 - qgotabimageview3dwtTest (SEGFAULT) > 49 - ContourMeshContainerTest (SEGFAULT) > 59 - QGoSegmentationAlgoTest (Failed) > > Are these tests working on your Mac? > > Kishore > > > On Tue, Jan 28, 2014 at 10:28 AM, Kishore Mosaliganti <kis...@gm...> wrote: > I am waiting to get a Visual Studio installed on my computer before getting back to you. > > Kishore > > > On Thu, Jan 23, 2014 at 9:20 AM, Kishore Mosaliganti <kis...@gm...> wrote: > Hi Arnaud, > > I will try the build today on Windows and get back to you! I have a fresh Windows installation on my machine. > > Best, > > Kishore > > > On Thu, Jan 23, 2014 at 7:35 AM, Arnaud Gelas <arn...@gm...> wrote: > Hi all, > > I have been working on merging the develop branch onto the master one, in order to make a new release of gofigure2. > > I have already fixed several CMake issues related to the super build process, especially for Mac (10.8.5). There is still one issue regarding video (i.e. FFMPEG) and the super build. > Note that the packaging is also working with DragNDrop (I'll make it the default for Mac). > > I would really appreciate if someone could give a try on windows the super build process to report/validate what has been done. > > Cheers, > Arnaud > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > > > |
|
From: Kishore M. <kis...@gm...> - 2014-01-28 15:47:45
|
In the previous email, I meant GoFigure2 compiled in Superbuild mode and normal mode successfully. I built it against Boost 1.49.0. However, in the superbuild, GoFigure2 is using ITK version 3.20.1 although the develop branch was moved to ITKv4 framework. Do you know why this is happening? Kishore On Tue, Jan 28, 2014 at 10:34 AM, Kishore Mosaliganti <kis...@gm... > wrote: > Hi Arnaud, > > After the superbuild fixes, GoFigure2 compiled without warnings on my > Ubuntu 13.10 machine. The following tests are failing: > > 7 - ctkCollapsibleGroupBoxTest1 (Failed) > 13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed) > 15 - itkvtkMeshMergeConvexHullFilterTest (Failed) > 37 - qgoimageview2dTest (OTHER_FAULT) > 43 - qgotabimageview2dTest (OTHER_FAULT) > 45 - qgotabimageview3dwtTest (SEGFAULT) > 49 - ContourMeshContainerTest (SEGFAULT) > 59 - QGoSegmentationAlgoTest (Failed) > > Are these tests working on your Mac? > > Kishore > > > On Tue, Jan 28, 2014 at 10:28 AM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> I am waiting to get a Visual Studio installed on my computer before >> getting back to you. >> >> Kishore >> >> >> On Thu, Jan 23, 2014 at 9:20 AM, Kishore Mosaliganti < >> kis...@gm...> wrote: >> >>> Hi Arnaud, >>> >>> I will try the build today on Windows and get back to you! I have a >>> fresh Windows installation on my machine. >>> >>> Best, >>> >>> Kishore >>> >>> >>> On Thu, Jan 23, 2014 at 7:35 AM, Arnaud Gelas <arn...@gm...>wrote: >>> >>>> Hi all, >>>> >>>> I have been working on merging the develop branch onto the master one, >>>> in order to make a new release of gofigure2. >>>> >>>> I have already fixed several CMake issues related to the super build >>>> process, especially for Mac (10.8.5). There is still one issue regarding >>>> video (i.e. FFMPEG) and the super build. >>>> Note that the packaging is also working with DragNDrop (I'll make it >>>> the default for Mac). >>>> >>>> I would really appreciate if someone could give a try on windows the >>>> super build process to report/validate what has been done. >>>> >>>> Cheers, >>>> Arnaud >>>> >>>> ------------------------------------------------------------------------------ >>>> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >>>> Learn Why More Businesses Are Choosing CenturyLink Cloud For >>>> Critical Workloads, Development Environments & Everything In Between. >>>> Get a Quote or Start a Free Trial Today. >>>> >>>> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >>>> _______________________________________________ >>>> GoFigure2-developers mailing list >>>> GoF...@li... >>>> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers >>>> >>> >>> >> > |
|
From: Kishore M. <kis...@gm...> - 2014-01-28 15:34:17
|
Hi Arnaud,
After the superbuild fixes, GoFigure2 compiled without warnings on my
Ubuntu 13.10 machine. The following tests are failing:
7 - ctkCollapsibleGroupBoxTest1 (Failed)
13 - itkvtkMeshSplitterDanielssonImageFilterTest (Failed)
15 - itkvtkMeshMergeConvexHullFilterTest (Failed)
37 - qgoimageview2dTest (OTHER_FAULT)
43 - qgotabimageview2dTest (OTHER_FAULT)
45 - qgotabimageview3dwtTest (SEGFAULT)
49 - ContourMeshContainerTest (SEGFAULT)
59 - QGoSegmentationAlgoTest (Failed)
Are these tests working on your Mac?
Kishore
On Tue, Jan 28, 2014 at 10:28 AM, Kishore Mosaliganti <kis...@gm...
> wrote:
> I am waiting to get a Visual Studio installed on my computer before
> getting back to you.
>
> Kishore
>
>
> On Thu, Jan 23, 2014 at 9:20 AM, Kishore Mosaliganti <
> kis...@gm...> wrote:
>
>> Hi Arnaud,
>>
>> I will try the build today on Windows and get back to you! I have a fresh
>> Windows installation on my machine.
>>
>> Best,
>>
>> Kishore
>>
>>
>> On Thu, Jan 23, 2014 at 7:35 AM, Arnaud Gelas <arn...@gm...>wrote:
>>
>>> Hi all,
>>>
>>> I have been working on merging the develop branch onto the master one,
>>> in order to make a new release of gofigure2.
>>>
>>> I have already fixed several CMake issues related to the super build
>>> process, especially for Mac (10.8.5). There is still one issue regarding
>>> video (i.e. FFMPEG) and the super build.
>>> Note that the packaging is also working with DragNDrop (I'll make it the
>>> default for Mac).
>>>
>>> I would really appreciate if someone could give a try on windows the
>>> super build process to report/validate what has been done.
>>>
>>> Cheers,
>>> Arnaud
>>>
>>> ------------------------------------------------------------------------------
>>> CenturyLink Cloud: The Leader in Enterprise Cloud Services.
>>> Learn Why More Businesses Are Choosing CenturyLink Cloud For
>>> Critical Workloads, Development Environments & Everything In Between.
>>> Get a Quote or Start a Free Trial Today.
>>>
>>> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk
>>> _______________________________________________
>>> GoFigure2-developers mailing list
>>> GoF...@li...
>>> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
>>>
>>
>>
>
|
|
From: Kishore M. <kis...@gm...> - 2014-01-28 15:28:52
|
I am waiting to get a Visual Studio installed on my computer before getting back to you. Kishore On Thu, Jan 23, 2014 at 9:20 AM, Kishore Mosaliganti <kis...@gm...>wrote: > Hi Arnaud, > > I will try the build today on Windows and get back to you! I have a fresh > Windows installation on my machine. > > Best, > > Kishore > > > On Thu, Jan 23, 2014 at 7:35 AM, Arnaud Gelas <arn...@gm...>wrote: > >> Hi all, >> >> I have been working on merging the develop branch onto the master one, in >> order to make a new release of gofigure2. >> >> I have already fixed several CMake issues related to the super build >> process, especially for Mac (10.8.5). There is still one issue regarding >> video (i.e. FFMPEG) and the super build. >> Note that the packaging is also working with DragNDrop (I'll make it the >> default for Mac). >> >> I would really appreciate if someone could give a try on windows the >> super build process to report/validate what has been done. >> >> Cheers, >> Arnaud >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> GoFigure2-developers mailing list >> GoF...@li... >> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers >> > > |
|
From: Kishore M. <kis...@gm...> - 2014-01-23 14:20:57
|
Hi Arnaud, I will try the build today on Windows and get back to you! I have a fresh Windows installation on my machine. Best, Kishore On Thu, Jan 23, 2014 at 7:35 AM, Arnaud Gelas <arn...@gm...> wrote: > Hi all, > > I have been working on merging the develop branch onto the master one, in > order to make a new release of gofigure2. > > I have already fixed several CMake issues related to the super build > process, especially for Mac (10.8.5). There is still one issue regarding > video (i.e. FFMPEG) and the super build. > Note that the packaging is also working with DragNDrop (I'll make it the > default for Mac). > > I would really appreciate if someone could give a try on windows the super > build process to report/validate what has been done. > > Cheers, > Arnaud > > ------------------------------------------------------------------------------ > CenturyLink Cloud: The Leader in Enterprise Cloud Services. > Learn Why More Businesses Are Choosing CenturyLink Cloud For > Critical Workloads, Development Environments & Everything In Between. > Get a Quote or Start a Free Trial Today. > > http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk > _______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > |
|
From: Arnaud G. <arn...@gm...> - 2014-01-23 12:33:39
|
Hi all, I have been working on merging the develop branch onto the master one, in order to make a new release of gofigure2. I have already fixed several CMake issues related to the super build process, especially for Mac (10.8.5). There is still one issue regarding video (i.e. FFMPEG) and the super build. Note that the packaging is also working with DragNDrop (I'll make it the default for Mac). I would really appreciate if someone could give a try on windows the super build process to report/validate what has been done. Cheers, Arnaud |
|
From: Kishore M. <kis...@gm...> - 2012-05-25 04:52:51
|
To further clarify on option 2, it is only the release configurations of master and develop branches that crash. The debug versions are doing fine. Kishore On Thu, May 24, 2012 at 2:23 PM, Kishore Mosaliganti <kis...@gm...>wrote: > Hi guys, > > It seems like there are two options to set this right: > > 1. Merge feature_ITKv4Integration to master and develop and use ITKv4. > Both the branches are doing well. > > 2. Fix the bug with Qt 4.8 with current master and develop branches using > ITKv3. Most likely it is some library error. > > If we want to do 1, should I have to test this out on Windows and MacOS > systems first? Do you guys mind trying it on your systems if you have the > time. > > Kishore > > > > On Thu, May 24, 2012 at 2:07 PM, Nicolas Rannou <huk...@gm...>wrote: > >> I remember we had a similar issue with Qt 4.8 on OSX Lion a few month >> ago... >> >> On Thu, May 24, 2012 at 1:44 PM, Kishore Mosaliganti < >> kis...@gm...> wrote: >> >>> Good idea! I am using Qt 4.8.1. I will try with a compiled earlier >>> version and let you know. >>> >>> Kishore >>> >>> >>> On Thu, May 24, 2012 at 1:37 PM, Nicolas Rannou <huk...@gm...>wrote: >>> >>>> Hi Kishore, >>>> >>>> Which version of Qt are you using? >>>> You might want to try to recompile vtk and GoFigure with an older >>>> version of Qt... >>>> >>>> Nicolas >>>> >>>> On Thu, May 24, 2012 at 1:08 PM, Kishore Mosaliganti < >>>> kis...@gm...> wrote: >>>> >>>>> Hi Arnaud, >>>>> >>>>> It seems like Master is failing in release mode only and works fine in >>>>> debug mode. >>>>> >>>>> To make sure everything is right, I recompiled ITK 3.20.1 and VTK 5.8 >>>>> in release mode from scratch. The output at at the command line is: >>>>> >>>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>>> selection model, which works on a different model than the view. >>>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>>> selection model, which works on a different model than the view. >>>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>>> selection model, which works on a different model than the view. >>>>> Segmentation fault (core dumped) >>>>> >>>>> The crash happens when I use one-click segmentation. I used Qt >>>>> debugger to further narrow down the location. >>>>> >>>>> 0 itk::CropImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u> >>>>> >::GenerateOutputInformation() 0 0xa5a2e7 >>>>> 1 itk::ProcessObject::UpdateOutputInformation() 0 >>>>> 0xd35103 >>>>> 2 itk::ImageBase<3u>::UpdateOutputInformation() 0 >>>>> 0x91eb3f >>>>> 3 itk::DataObject::Update() 0 0xd287bd >>>>> 4 itk::ReconstructionImageFilter<itk::Image<float, 3u>, >>>>> itk::Image<float, 3u>, std::less<float> >::GenerateData() 0 >>>>> 0xa588aa >>>>> 5 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>>> 0 0xd35adc >>>>> 6 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>>> 7 itk::GrayscaleFillholeImageFilter<itk::Image<float, 3u>, >>>>> itk::Image<float, 3u> >::GenerateData() 0 0xa523a5 >>>>> 8 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>>> 0 0xd35adc >>>>> 9 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>>> 10 itk::PreprocessImageFilter<itk::Image<unsigned char, 3u>, >>>>> itk::Image<unsigned char, 3u> >::GenerateData() 0 0xa4696e >>>>> 11 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>>> 0 0xd35adc >>>>> 12 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>>> 13 itk::WatershedBasedCellSegmentation<itk::Image<unsigned char, >>>>> 3u>, itk::Image<double, 3u>, itk::Image<int, 3u> >::GenerateData() >>>>> 0 0xa8f9c1 >>>>> 14 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>>> 0 0xd35adc >>>>> 15 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>>> 16 QGoMeshWaterShedAlgo::ApplyAlgo(GoImageProcessor*, std::string, >>>>> bool) 0 0xa601b5 >>>>> 17 QGoMeshEditingWidgetManager::ApplyWaterShedAlgo() 0 >>>>> 0x9d2f71 >>>>> 18 QGoMeshEditingWidgetManager::qt_static_metacall(QObject*, >>>>> QMetaObject::Call, int, void**) 0 0xbbb4c5 >>>>> 19 QMetaObject::activate qobject.cpp 3547 >>>>> 0x7ffff5306281 >>>>> 20 QGoAlgorithmsManagerWidget::qt_static_metacall(QObject*, >>>>> QMetaObject::Call, int, void**) 0 0xbffadd >>>>> ... <More> >>>>> >>>>> >>>>> Any ideas? >>>>> >>>>> >>>>> Kishore >>>>> >>>>> >>>>> >>>>> On Thu, May 24, 2012 at 7:14 AM, Kishore Mosaliganti < >>>>> kis...@gm...> wrote: >>>>> >>>>>> Hi Arnaud, >>>>>> >>>>>> I will look at the one-click problem on master branch today and get >>>>>> back to you. It might not be a GF2 bug since it was working before my >>>>>> Ubuntu 12.04 update. >>>>>> >>>>>> Kishore >>>>>> >>>>>> >>>>>> On Thu, May 24, 2012 at 7:08 AM, Arnaud Gelas <arn...@gm...>wrote: >>>>>> >>>>>>> Cool! >>>>>>> >>>>>>> Have you figured out the bug when using the one click segmentation? >>>>>>> >>>>>>> >>>>>>> On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: >>>>>>> >>>>>>> Hi Arnaud, >>>>>>> >>>>>>> I sorted the vtkLSM issue in the second commit of the branch by >>>>>>> adding it to the target link libraries. >>>>>>> >>>>>>> However, the images are not being loaded, only a black screen >>>>>>> exists upon opening GF2. It seems like somewhere an Update() is required. I >>>>>>> will try to step through my changes and see where that is happening. >>>>>>> >>>>>>> Kishore >>>>>>> >>>>>>> On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm... >>>>>>> > wrote: >>>>>>> >>>>>>>> Have you fixed the issue with vtkLSM ? >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >>>>>>>> >>>>>>>> Hi all, >>>>>>>> >>>>>>>> The branch compiles correctly now with vtk 6.0. But it does not >>>>>>>> produce any visualization -- only dark screen. Some minor bugs have been >>>>>>>> introduced into the pipeline. >>>>>>>> >>>>>>>> Kishore >>>>>>>> >>>>>>>> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < >>>>>>>> kis...@gm...> wrote: >>>>>>>> >>>>>>>>> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration >>>>>>>>> off the feature_ITKv4Integration branch. In the new branch, I made all the >>>>>>>>> changes for making it compatible to VTK 6.0. >>>>>>>>> >>>>>>>>> There is one small CMake problem in that it is not linking to >>>>>>>>> vtkLSM library. Can you fix that? It should take you 2 min. Everything else >>>>>>>>> is all set. >>>>>>>>> >>>>>>>>> Kishore >>>>>>>>> >>>>>>>>> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >>>>>>>>> kis...@gm...> wrote: >>>>>>>>> >>>>>>>>>> Hi Arnaud, >>>>>>>>>> >>>>>>>>>> Do you know what is the role of vtkTypeRevisionMacro() and >>>>>>>>>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>>>>>>>>> problems in VTK 6.0 and a lot of my code has it. >>>>>>>>>> >>>>>>>>>> Kishore >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Live Security Virtual Conference >>>>> Exclusive live event will cover all the ways today's security and >>>>> threat landscape has changed and how IT managers can respond. >>>>> Discussions >>>>> will include endpoint security, mobile security and the latest in >>>>> malware >>>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>>> _______________________________________________ >>>>> GoFigure2-developers mailing list >>>>> GoF...@li... >>>>> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers >>>>> >>>>> >>>> >>> >> > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 18:23:30
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Hi guys, It seems like there are two options to set this right: 1. Merge feature_ITKv4Integration to master and develop and use ITKv4. Both the branches are doing well. 2. Fix the bug with Qt 4.8 with current master and develop branches using ITKv3. Most likely it is some library error. If we want to do 1, should I have to test this out on Windows and MacOS systems first? Do you guys mind trying it on your systems if you have the time. Kishore On Thu, May 24, 2012 at 2:07 PM, Nicolas Rannou <huk...@gm...>wrote: > I remember we had a similar issue with Qt 4.8 on OSX Lion a few month > ago... > > On Thu, May 24, 2012 at 1:44 PM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> Good idea! I am using Qt 4.8.1. I will try with a compiled earlier >> version and let you know. >> >> Kishore >> >> >> On Thu, May 24, 2012 at 1:37 PM, Nicolas Rannou <huk...@gm...>wrote: >> >>> Hi Kishore, >>> >>> Which version of Qt are you using? >>> You might want to try to recompile vtk and GoFigure with an older >>> version of Qt... >>> >>> Nicolas >>> >>> On Thu, May 24, 2012 at 1:08 PM, Kishore Mosaliganti < >>> kis...@gm...> wrote: >>> >>>> Hi Arnaud, >>>> >>>> It seems like Master is failing in release mode only and works fine in >>>> debug mode. >>>> >>>> To make sure everything is right, I recompiled ITK 3.20.1 and VTK 5.8 >>>> in release mode from scratch. The output at at the command line is: >>>> >>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>> selection model, which works on a different model than the view. >>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>> selection model, which works on a different model than the view. >>>> QAbstractItemView::setSelectionModel() failed: Trying to set a >>>> selection model, which works on a different model than the view. >>>> Segmentation fault (core dumped) >>>> >>>> The crash happens when I use one-click segmentation. I used Qt debugger >>>> to further narrow down the location. >>>> >>>> 0 itk::CropImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u> >>>> >::GenerateOutputInformation() 0 0xa5a2e7 >>>> 1 itk::ProcessObject::UpdateOutputInformation() 0 >>>> 0xd35103 >>>> 2 itk::ImageBase<3u>::UpdateOutputInformation() 0 >>>> 0x91eb3f >>>> 3 itk::DataObject::Update() 0 0xd287bd >>>> 4 itk::ReconstructionImageFilter<itk::Image<float, 3u>, >>>> itk::Image<float, 3u>, std::less<float> >::GenerateData() 0 >>>> 0xa588aa >>>> 5 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >>>> 0xd35adc >>>> 6 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>> 7 itk::GrayscaleFillholeImageFilter<itk::Image<float, 3u>, >>>> itk::Image<float, 3u> >::GenerateData() 0 0xa523a5 >>>> 8 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >>>> 0xd35adc >>>> 9 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>> 10 itk::PreprocessImageFilter<itk::Image<unsigned char, 3u>, >>>> itk::Image<unsigned char, 3u> >::GenerateData() 0 0xa4696e >>>> 11 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>> 0 0xd35adc >>>> 12 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>> 13 itk::WatershedBasedCellSegmentation<itk::Image<unsigned char, >>>> 3u>, itk::Image<double, 3u>, itk::Image<int, 3u> >::GenerateData() >>>> 0 0xa8f9c1 >>>> 14 itk::ProcessObject::UpdateOutputData(itk::DataObject*) >>>> 0 0xd35adc >>>> 15 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >>>> 16 QGoMeshWaterShedAlgo::ApplyAlgo(GoImageProcessor*, std::string, >>>> bool) 0 0xa601b5 >>>> 17 QGoMeshEditingWidgetManager::ApplyWaterShedAlgo() 0 >>>> 0x9d2f71 >>>> 18 QGoMeshEditingWidgetManager::qt_static_metacall(QObject*, >>>> QMetaObject::Call, int, void**) 0 0xbbb4c5 >>>> 19 QMetaObject::activate qobject.cpp 3547 0x7ffff5306281 >>>> 20 QGoAlgorithmsManagerWidget::qt_static_metacall(QObject*, >>>> QMetaObject::Call, int, void**) 0 0xbffadd >>>> ... <More> >>>> >>>> >>>> Any ideas? >>>> >>>> >>>> Kishore >>>> >>>> >>>> >>>> On Thu, May 24, 2012 at 7:14 AM, Kishore Mosaliganti < >>>> kis...@gm...> wrote: >>>> >>>>> Hi Arnaud, >>>>> >>>>> I will look at the one-click problem on master branch today and get >>>>> back to you. It might not be a GF2 bug since it was working before my >>>>> Ubuntu 12.04 update. >>>>> >>>>> Kishore >>>>> >>>>> >>>>> On Thu, May 24, 2012 at 7:08 AM, Arnaud Gelas <arn...@gm...>wrote: >>>>> >>>>>> Cool! >>>>>> >>>>>> Have you figured out the bug when using the one click segmentation? >>>>>> >>>>>> >>>>>> On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: >>>>>> >>>>>> Hi Arnaud, >>>>>> >>>>>> I sorted the vtkLSM issue in the second commit of the branch by >>>>>> adding it to the target link libraries. >>>>>> >>>>>> However, the images are not being loaded, only a black screen >>>>>> exists upon opening GF2. It seems like somewhere an Update() is required. I >>>>>> will try to step through my changes and see where that is happening. >>>>>> >>>>>> Kishore >>>>>> >>>>>> On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm...>wrote: >>>>>> >>>>>>> Have you fixed the issue with vtkLSM ? >>>>>>> >>>>>>> >>>>>>> >>>>>>> On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >>>>>>> >>>>>>> Hi all, >>>>>>> >>>>>>> The branch compiles correctly now with vtk 6.0. But it does not >>>>>>> produce any visualization -- only dark screen. Some minor bugs have been >>>>>>> introduced into the pipeline. >>>>>>> >>>>>>> Kishore >>>>>>> >>>>>>> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < >>>>>>> kis...@gm...> wrote: >>>>>>> >>>>>>>> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration >>>>>>>> off the feature_ITKv4Integration branch. In the new branch, I made all the >>>>>>>> changes for making it compatible to VTK 6.0. >>>>>>>> >>>>>>>> There is one small CMake problem in that it is not linking to >>>>>>>> vtkLSM library. Can you fix that? It should take you 2 min. Everything else >>>>>>>> is all set. >>>>>>>> >>>>>>>> Kishore >>>>>>>> >>>>>>>> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >>>>>>>> kis...@gm...> wrote: >>>>>>>> >>>>>>>>> Hi Arnaud, >>>>>>>>> >>>>>>>>> Do you know what is the role of vtkTypeRevisionMacro() and >>>>>>>>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>>>>>>>> problems in VTK 6.0 and a lot of my code has it. >>>>>>>>> >>>>>>>>> Kishore >>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>> >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> Live Security Virtual Conference >>>> Exclusive live event will cover all the ways today's security and >>>> threat landscape has changed and how IT managers can respond. >>>> Discussions >>>> will include endpoint security, mobile security and the latest in >>>> malware >>>> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >>>> _______________________________________________ >>>> GoFigure2-developers mailing list >>>> GoF...@li... >>>> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers >>>> >>>> >>> >> > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 17:44:16
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Good idea! I am using Qt 4.8.1. I will try with a compiled earlier version and let you know. Kishore On Thu, May 24, 2012 at 1:37 PM, Nicolas Rannou <huk...@gm...>wrote: > Hi Kishore, > > Which version of Qt are you using? > You might want to try to recompile vtk and GoFigure with an older version > of Qt... > > Nicolas > > On Thu, May 24, 2012 at 1:08 PM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> Hi Arnaud, >> >> It seems like Master is failing in release mode only and works fine in >> debug mode. >> >> To make sure everything is right, I recompiled ITK 3.20.1 and VTK 5.8 in >> release mode from scratch. The output at at the command line is: >> >> QAbstractItemView::setSelectionModel() failed: Trying to set a selection >> model, which works on a different model than the view. >> QAbstractItemView::setSelectionModel() failed: Trying to set a selection >> model, which works on a different model than the view. >> QAbstractItemView::setSelectionModel() failed: Trying to set a selection >> model, which works on a different model than the view. >> Segmentation fault (core dumped) >> >> The crash happens when I use one-click segmentation. I used Qt debugger >> to further narrow down the location. >> >> 0 itk::CropImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u> >> >::GenerateOutputInformation() 0 0xa5a2e7 >> 1 itk::ProcessObject::UpdateOutputInformation() 0 >> 0xd35103 >> 2 itk::ImageBase<3u>::UpdateOutputInformation() 0 >> 0x91eb3f >> 3 itk::DataObject::Update() 0 0xd287bd >> 4 itk::ReconstructionImageFilter<itk::Image<float, 3u>, >> itk::Image<float, 3u>, std::less<float> >::GenerateData() 0 >> 0xa588aa >> 5 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >> 0xd35adc >> 6 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >> 7 itk::GrayscaleFillholeImageFilter<itk::Image<float, 3u>, >> itk::Image<float, 3u> >::GenerateData() 0 0xa523a5 >> 8 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >> 0xd35adc >> 9 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >> 10 itk::PreprocessImageFilter<itk::Image<unsigned char, 3u>, >> itk::Image<unsigned char, 3u> >::GenerateData() 0 0xa4696e >> 11 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >> 0xd35adc >> 12 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >> 13 itk::WatershedBasedCellSegmentation<itk::Image<unsigned char, 3u>, >> itk::Image<double, 3u>, itk::Image<int, 3u> >::GenerateData() 0 >> 0xa8f9c1 >> 14 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 >> 0xd35adc >> 15 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 >> 16 QGoMeshWaterShedAlgo::ApplyAlgo(GoImageProcessor*, std::string, >> bool) 0 0xa601b5 >> 17 QGoMeshEditingWidgetManager::ApplyWaterShedAlgo() 0 >> 0x9d2f71 >> 18 QGoMeshEditingWidgetManager::qt_static_metacall(QObject*, >> QMetaObject::Call, int, void**) 0 0xbbb4c5 >> 19 QMetaObject::activate qobject.cpp 3547 0x7ffff5306281 >> 20 QGoAlgorithmsManagerWidget::qt_static_metacall(QObject*, >> QMetaObject::Call, int, void**) 0 0xbffadd >> ... <More> >> >> >> Any ideas? >> >> >> Kishore >> >> >> >> On Thu, May 24, 2012 at 7:14 AM, Kishore Mosaliganti < >> kis...@gm...> wrote: >> >>> Hi Arnaud, >>> >>> I will look at the one-click problem on master branch today and get back >>> to you. It might not be a GF2 bug since it was working before my Ubuntu >>> 12.04 update. >>> >>> Kishore >>> >>> >>> On Thu, May 24, 2012 at 7:08 AM, Arnaud Gelas <arn...@gm...>wrote: >>> >>>> Cool! >>>> >>>> Have you figured out the bug when using the one click segmentation? >>>> >>>> >>>> On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: >>>> >>>> Hi Arnaud, >>>> >>>> I sorted the vtkLSM issue in the second commit of the branch by >>>> adding it to the target link libraries. >>>> >>>> However, the images are not being loaded, only a black screen exists >>>> upon opening GF2. It seems like somewhere an Update() is required. I will >>>> try to step through my changes and see where that is happening. >>>> >>>> Kishore >>>> >>>> On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm...>wrote: >>>> >>>>> Have you fixed the issue with vtkLSM ? >>>>> >>>>> >>>>> >>>>> On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >>>>> >>>>> Hi all, >>>>> >>>>> The branch compiles correctly now with vtk 6.0. But it does not >>>>> produce any visualization -- only dark screen. Some minor bugs have been >>>>> introduced into the pipeline. >>>>> >>>>> Kishore >>>>> >>>>> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < >>>>> kis...@gm...> wrote: >>>>> >>>>>> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration >>>>>> off the feature_ITKv4Integration branch. In the new branch, I made all the >>>>>> changes for making it compatible to VTK 6.0. >>>>>> >>>>>> There is one small CMake problem in that it is not linking to vtkLSM >>>>>> library. Can you fix that? It should take you 2 min. Everything else is all >>>>>> set. >>>>>> >>>>>> Kishore >>>>>> >>>>>> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >>>>>> kis...@gm...> wrote: >>>>>> >>>>>>> Hi Arnaud, >>>>>>> >>>>>>> Do you know what is the role of vtkTypeRevisionMacro() and >>>>>>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>>>>>> problems in VTK 6.0 and a lot of my code has it. >>>>>>> >>>>>>> Kishore >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>> >>>> >>> >> >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> _______________________________________________ >> GoFigure2-developers mailing list >> GoF...@li... >> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers >> >> > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 17:08:34
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Hi Arnaud, It seems like Master is failing in release mode only and works fine in debug mode. To make sure everything is right, I recompiled ITK 3.20.1 and VTK 5.8 in release mode from scratch. The output at at the command line is: QAbstractItemView::setSelectionModel() failed: Trying to set a selection model, which works on a different model than the view. QAbstractItemView::setSelectionModel() failed: Trying to set a selection model, which works on a different model than the view. QAbstractItemView::setSelectionModel() failed: Trying to set a selection model, which works on a different model than the view. Segmentation fault (core dumped) The crash happens when I use one-click segmentation. I used Qt debugger to further narrow down the location. 0 itk::CropImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u> >::GenerateOutputInformation() 0 0xa5a2e7 1 itk::ProcessObject::UpdateOutputInformation() 0 0xd35103 2 itk::ImageBase<3u>::UpdateOutputInformation() 0 0x91eb3f 3 itk::DataObject::Update() 0 0xd287bd 4 itk::ReconstructionImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u>, std::less<float> >::GenerateData() 0 0xa588aa 5 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 0xd35adc 6 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 7 itk::GrayscaleFillholeImageFilter<itk::Image<float, 3u>, itk::Image<float, 3u> >::GenerateData() 0 0xa523a5 8 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 0xd35adc 9 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 10 itk::PreprocessImageFilter<itk::Image<unsigned char, 3u>, itk::Image<unsigned char, 3u> >::GenerateData() 0 0xa4696e 11 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 0xd35adc 12 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 13 itk::WatershedBasedCellSegmentation<itk::Image<unsigned char, 3u>, itk::Image<double, 3u>, itk::Image<int, 3u> >::GenerateData() 0 0xa8f9c1 14 itk::ProcessObject::UpdateOutputData(itk::DataObject*) 0 0xd35adc 15 itk::ImageBase<3u>::UpdateOutputData() 0 0x92da82 16 QGoMeshWaterShedAlgo::ApplyAlgo(GoImageProcessor*, std::string, bool) 0 0xa601b5 17 QGoMeshEditingWidgetManager::ApplyWaterShedAlgo() 0 0x9d2f71 18 QGoMeshEditingWidgetManager::qt_static_metacall(QObject*, QMetaObject::Call, int, void**) 0 0xbbb4c5 19 QMetaObject::activate qobject.cpp 3547 0x7ffff5306281 20 QGoAlgorithmsManagerWidget::qt_static_metacall(QObject*, QMetaObject::Call, int, void**) 0 0xbffadd ... <More> Any ideas? Kishore On Thu, May 24, 2012 at 7:14 AM, Kishore Mosaliganti <kis...@gm...>wrote: > Hi Arnaud, > > I will look at the one-click problem on master branch today and get back > to you. It might not be a GF2 bug since it was working before my Ubuntu > 12.04 update. > > Kishore > > > On Thu, May 24, 2012 at 7:08 AM, Arnaud Gelas <arn...@gm...>wrote: > >> Cool! >> >> Have you figured out the bug when using the one click segmentation? >> >> >> On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: >> >> Hi Arnaud, >> >> I sorted the vtkLSM issue in the second commit of the branch by adding >> it to the target link libraries. >> >> However, the images are not being loaded, only a black screen exists >> upon opening GF2. It seems like somewhere an Update() is required. I will >> try to step through my changes and see where that is happening. >> >> Kishore >> >> On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm...>wrote: >> >>> Have you fixed the issue with vtkLSM ? >>> >>> >>> >>> On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >>> >>> Hi all, >>> >>> The branch compiles correctly now with vtk 6.0. But it does not produce >>> any visualization -- only dark screen. Some minor bugs have been introduced >>> into the pipeline. >>> >>> Kishore >>> >>> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < >>> kis...@gm...> wrote: >>> >>>> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration off >>>> the feature_ITKv4Integration branch. In the new branch, I made all the >>>> changes for making it compatible to VTK 6.0. >>>> >>>> There is one small CMake problem in that it is not linking to vtkLSM >>>> library. Can you fix that? It should take you 2 min. Everything else is all >>>> set. >>>> >>>> Kishore >>>> >>>> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >>>> kis...@gm...> wrote: >>>> >>>>> Hi Arnaud, >>>>> >>>>> Do you know what is the role of vtkTypeRevisionMacro() and >>>>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>>>> problems in VTK 6.0 and a lot of my code has it. >>>>> >>>>> Kishore >>>>> >>>>> >>>> >>> >>> >> >> > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 11:14:22
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Hi Arnaud, I will look at the one-click problem on master branch today and get back to you. It might not be a GF2 bug since it was working before my Ubuntu 12.04 update. Kishore On Thu, May 24, 2012 at 7:08 AM, Arnaud Gelas <arn...@gm...> wrote: > Cool! > > Have you figured out the bug when using the one click segmentation? > > > On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: > > Hi Arnaud, > > I sorted the vtkLSM issue in the second commit of the branch by adding > it to the target link libraries. > > However, the images are not being loaded, only a black screen exists > upon opening GF2. It seems like somewhere an Update() is required. I will > try to step through my changes and see where that is happening. > > Kishore > > On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm...>wrote: > >> Have you fixed the issue with vtkLSM ? >> >> >> >> On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >> >> Hi all, >> >> The branch compiles correctly now with vtk 6.0. But it does not produce >> any visualization -- only dark screen. Some minor bugs have been introduced >> into the pipeline. >> >> Kishore >> >> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < >> kis...@gm...> wrote: >> >>> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration off >>> the feature_ITKv4Integration branch. In the new branch, I made all the >>> changes for making it compatible to VTK 6.0. >>> >>> There is one small CMake problem in that it is not linking to vtkLSM >>> library. Can you fix that? It should take you 2 min. Everything else is all >>> set. >>> >>> Kishore >>> >>> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >>> kis...@gm...> wrote: >>> >>>> Hi Arnaud, >>>> >>>> Do you know what is the role of vtkTypeRevisionMacro() and >>>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>>> problems in VTK 6.0 and a lot of my code has it. >>>> >>>> Kishore >>>> >>>> >>> >> >> > > |
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From: Arnaud G. <arn...@gm...> - 2012-05-24 11:08:59
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Cool! Have you figured out the bug when using the one click segmentation? On 05/24/2012 01:04 PM, Kishore Mosaliganti wrote: > Hi Arnaud, > > I sorted the vtkLSM issue in the second commit of the branch by adding > it to the target link libraries. > > However, the images are not being loaded, only a black screen exists > upon opening GF2. It seems like somewhere an Update() is required. I > will try to step through my changes and see where that is happening. > > Kishore > > On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm... > <mailto:arn...@gm...>> wrote: > > Have you fixed the issue with vtkLSM ? > > > > On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: >> Hi all, >> >> The branch compiles correctly now with vtk 6.0. But it does not >> produce any visualization -- only dark screen. Some minor bugs >> have been introduced into the pipeline. >> >> Kishore >> >> On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti >> <kis...@gm... <mailto:kis...@gm...>> wrote: >> >> Ok, I jusr pushed a new branch called >> feature_ITKv4VTK6Integration off the feature_ITKv4Integration >> branch. In the new branch, I made all the changes for making >> it compatible to VTK 6.0. >> >> There is one small CMake problem in that it is not linking to >> vtkLSM library. Can you fix that? It should take you 2 min. >> Everything else is all set. >> >> Kishore >> >> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti >> <kis...@gm... <mailto:kis...@gm...>> wrote: >> >> Hi Arnaud, >> >> Do you know what is the role of vtkTypeRevisionMacro() >> and vtkCxxRevisionMacro() before the definition of a >> class ? It seems to cause problems in VTK 6.0 and a lot >> of my code has it. >> >> Kishore >> >> >> > > |
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From: Arnaud G. <arn...@gm...> - 2012-05-24 11:08:11
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Hi Kishore, You can add a column to the table widget for the color (see what has been done for things like volume, or track length). But the case of the color you might have to synchronize it to the DB (?), unless you want something static. You may also add this column (in the TW) in the db related column of a given trace. HTH, Arnaud On 05/24/2012 01:01 PM, Kishore Mosaliganti wrote: > Hi Arnaud, > > If I add color to track, I can't sort them in the database table > widget. I was thinking of a way to sort tracks. Is there a field in > the import text file that I can fill into to get that information into db? > > Your help is appreciated. > > Thanks! > Kishore > > On Thu, May 24, 2012 at 2:09 AM, Arnaud Gelas <arn...@gm... > <mailto:arn...@gm...>> wrote: > > Hi Kishore, > > The concept of flavor does not exist in gofigure2, it was part of > the first version. It was traded in favor of color (which are > meant to be used for classification of any traces). Note that all > traces (contours, meshes, tracks, lineages) have extra tables in > the DB be able to add any kind of information. The set up is ready! > > Arnaud > > > > On 05/23/2012 11:35 PM, Kishore Mosaliganti wrote: >> Hi all, >> >> Is there a track flavors like the celltype and subcellulartype >> for classifying tracks? >> >> Thanks, >> Kishore >> >> >> ------------------------------------------------------------------------------ >> Live Security Virtual Conference >> Exclusive live event will cover all the ways today's security and >> threat landscape has changed and how IT managers can respond. Discussions >> will include endpoint security, mobile security and the latest in malware >> threats.http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ >> >> >> _______________________________________________ >> GoFigure2-developers mailing list >> GoF...@li... <mailto:GoF...@li...> >> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 11:04:40
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Hi Arnaud, I sorted the vtkLSM issue in the second commit of the branch by adding it to the target link libraries. However, the images are not being loaded, only a black screen exists upon opening GF2. It seems like somewhere an Update() is required. I will try to step through my changes and see where that is happening. Kishore On Thu, May 24, 2012 at 2:10 AM, Arnaud Gelas <arn...@gm...> wrote: > Have you fixed the issue with vtkLSM ? > > > > On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: > > Hi all, > > The branch compiles correctly now with vtk 6.0. But it does not produce > any visualization -- only dark screen. Some minor bugs have been introduced > into the pipeline. > > Kishore > > On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration off >> the feature_ITKv4Integration branch. In the new branch, I made all the >> changes for making it compatible to VTK 6.0. >> >> There is one small CMake problem in that it is not linking to vtkLSM >> library. Can you fix that? It should take you 2 min. Everything else is all >> set. >> >> Kishore >> >> On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < >> kis...@gm...> wrote: >> >>> Hi Arnaud, >>> >>> Do you know what is the role of vtkTypeRevisionMacro() and >>> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >>> problems in VTK 6.0 and a lot of my code has it. >>> >>> Kishore >>> >>> >> > > |
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From: Kishore M. <kis...@gm...> - 2012-05-24 11:01:31
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Hi Arnaud, If I add color to track, I can't sort them in the database table widget. I was thinking of a way to sort tracks. Is there a field in the import text file that I can fill into to get that information into db? Your help is appreciated. Thanks! Kishore On Thu, May 24, 2012 at 2:09 AM, Arnaud Gelas <arn...@gm...> wrote: > Hi Kishore, > > The concept of flavor does not exist in gofigure2, it was part of the > first version. It was traded in favor of color (which are meant to be used > for classification of any traces). Note that all traces (contours, meshes, > tracks, lineages) have extra tables in the DB be able to add any kind of > information. The set up is ready! > > Arnaud > > > > On 05/23/2012 11:35 PM, Kishore Mosaliganti wrote: > > Hi all, > > Is there a track flavors like the celltype and subcellulartype for > classifying tracks? > > Thanks, > Kishore > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > > > > _______________________________________________ > GoFigure2-developers mailing lis...@li...https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > > |
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From: Arnaud G. <arn...@gm...> - 2012-05-24 06:11:01
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Have you fixed the issue with vtkLSM ? On 05/23/2012 11:04 PM, Kishore Mosaliganti wrote: > Hi all, > > The branch compiles correctly now with vtk 6.0. But it does not > produce any visualization -- only dark screen. Some minor bugs have > been introduced into the pipeline. > > Kishore > > On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti > <kis...@gm... <mailto:kis...@gm...>> wrote: > > Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration > off the feature_ITKv4Integration branch. In the new branch, I made > all the changes for making it compatible to VTK 6.0. > > There is one small CMake problem in that it is not linking to > vtkLSM library. Can you fix that? It should take you 2 min. > Everything else is all set. > > Kishore > > On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti > <kis...@gm... <mailto:kis...@gm...>> wrote: > > Hi Arnaud, > > Do you know what is the role of vtkTypeRevisionMacro() and > vtkCxxRevisionMacro() before the definition of a class ? It > seems to cause problems in VTK 6.0 and a lot of my code has it. > > Kishore > > > |
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From: Arnaud G. <arn...@gm...> - 2012-05-24 06:09:46
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Hi Kishore, The concept of flavor does not exist in gofigure2, it was part of the first version. It was traded in favor of color (which are meant to be used for classification of any traces). Note that all traces (contours, meshes, tracks, lineages) have extra tables in the DB be able to add any kind of information. The set up is ready! Arnaud On 05/23/2012 11:35 PM, Kishore Mosaliganti wrote: > Hi all, > > Is there a track flavors like the celltype and subcellulartype for > classifying tracks? > > Thanks, > Kishore > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > > > _______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers |
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From: Kishore M. <kis...@gm...> - 2012-05-23 21:35:38
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Hi all, Is there a track flavors like the celltype and subcellulartype for classifying tracks? Thanks, Kishore |
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From: Kishore M. <kis...@gm...> - 2012-05-23 21:04:31
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Hi all, The branch compiles correctly now with vtk 6.0. But it does not produce any visualization -- only dark screen. Some minor bugs have been introduced into the pipeline. Kishore On Wed, May 23, 2012 at 2:37 PM, Kishore Mosaliganti <kis...@gm...>wrote: > Ok, I jusr pushed a new branch called feature_ITKv4VTK6Integration off the > feature_ITKv4Integration branch. In the new branch, I made all the changes > for making it compatible to VTK 6.0. > > There is one small CMake problem in that it is not linking to vtkLSM > library. Can you fix that? It should take you 2 min. Everything else is all > set. > > Kishore > > On Wed, May 23, 2012 at 11:31 AM, Kishore Mosaliganti < > kis...@gm...> wrote: > >> Hi Arnaud, >> >> Do you know what is the role of vtkTypeRevisionMacro() and >> vtkCxxRevisionMacro() before the definition of a class ? It seems to cause >> problems in VTK 6.0 and a lot of my code has it. >> >> Kishore >> >> > |
