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From: Arnaud G. <arn...@hm...> - 2011-12-09 06:40:55
|
Hi Kishore,
Thanks for reporting!
We have just opened one item in our bug tracker, here:
https://github.com/gofigure2/GoFigure2/issues/120
Best,
Arnaud
On Dec 9, 2011, at 1:06 AM, Kishore Mosaliganti wrote:
> Please send this email at: gof...@li...
>
>>>> IMPORTANT: a precise description of the steps to reproduce the bug
> is important.
>>>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur,
> please let us know and try to describe it.
>>>> IMPORTANT: let us know if the dataset you are using is public. Many
> bugs result from a corrupted dataset.
>
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.04, xp sp2, lion, etc.)
> Ubuntu
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> Minor
>
> ------------------------------------------
> * description:
> Cannot assign contour at another timepoint to a mesh in the table
> widget. Have to change to that timepoint first.
>
> ------------------------------------------
> * how to reproduce it:
> 1. Open gofigure. Make a contour at timepoint t=T
> 2. Change to t=T+1
> 3. From table widget, assign contour at t=T to a new mesh. GoFigure
> complains
>
> ------------------------------------------------------------------------------
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|
|
From: Kishore M. <kis...@hm...> - 2011-12-09 00:07:05
|
Please send this email at: gof...@li... >>> IMPORTANT: a precise description of the steps to reproduce the bug is important. >>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it. >>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset. ------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.04, xp sp2, lion, etc.) Ubuntu ------------------------------------------ * severity: (Minor, Medium, Major) Minor ------------------------------------------ * description: Cannot assign contour at another timepoint to a mesh in the table widget. Have to change to that timepoint first. ------------------------------------------ * how to reproduce it: 1. Open gofigure. Make a contour at timepoint t=T 2. Change to t=T+1 3. From table widget, assign contour at t=T to a new mesh. GoFigure complains |
|
From: Nicolas R. <nic...@hm...> - 2011-12-07 22:06:08
|
Hi all, GoFigure2 0.9.0 has been released today! Many changes and bug fixes in this new version. (see at the end of this email) Installers and source code are available at: http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.9.0/ Enjoy GoFigure2, Nicolas ************* ** General ** ************* -New options at start up accessible from command line *help: list commands available *version: prints version of gofigure *shortcut: list shorcuts *input: open an image from command line *max number of meshes: select the threshold above with we only load 3 time points -New Shortcuts * Based on user's feedback for a more efficient and user friendly experience -Maximum size of the main window * GoFigure can be maximized over 2 screens ******************** ** Visualizations ** ******************** -The real colors are displayed -New transfer function editor to modify the appearance of a channel * Color * LUT * Gamma Correction * Opacity of the channel for the volume rendering -"Smart" Volume Rendering which adapts to your hardware -Enhanced Doppler View * Number of visible time points can be modified * Step between each time point can be modified * Color of each time point can be modified -Desynchronized Views Option * Zoom, Pan, Scroll in the 3 2D views independently -Show/Hide planes in the 3D view ************ ** Traces ** ************ -Meshes * Split * Merge -Tracks * Split * Merge * Editing widget (Split) * Visualization Widget (color, glyph, tubes, width) * Goto beginning/end of track * Track stats (volumes, etc.) -Lineages * All tracks action update the lineages * Visualization Widget (color) * Lineage stats (depth, etc.) -Export/import: * Easy to share your meshes, tracks and lineages * Import several files in parallel ***************** ** Performance ** ***************** -Load only 3 time points in memory if you have more than 5000 meshes (threshold customizable from command line) -Many actions are parallelized with Open MP ********** ** Bugs ** ********** -Lot of fixes including: -bug report: -easy to report a bug * close "Use DB wizard" does not crash * Go to this mesh update sliders * Do you want to delete the mesh?: NO does NOT delete it * Mesh position after semi auto segmentation is accurate (not centered on the seed) |
|
From: Arnaud G. <arn...@hm...> - 2011-11-23 10:55:04
|
Hi all, We have been using / testing the branch release_candidate for few weeks now, it seems to be quite stable. I would like to merge this branch onto master, and to make a new release. Before proceeding, I'd like to know if there are any concerns. Cause of the holiday, I'd like to wait the end of next week to merge on master. During this time, please do not add new features on this branch, only bug fixes. If you are currently working on a new feature, please merge your work on the develop branch (as usual). Happy Holidays, Best, Arnaud |
|
From: Arnaud G. <arn...@hm...> - 2011-11-15 13:13:15
|
Hi Kishore,
Thanks for reporting!
We have just opened one item in our bug tracker, here:
https://github.com/gofigure2/GoFigure2/issues/115
Best,
Arnaud
On Nov 15, 2011, at 12:48 AM, Kishore Mosaliganti wrote:
> Please send this email at: gof...@li...
>
>>>> IMPORTANT: a precise description of the steps to reproduce the bug
> is important.
>>>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur,
> please let us know and try to describe it.
>>>> IMPORTANT: let us know if the dataset you are using is public. Many
> bugs result from a corrupted dataset.
>
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.04, xp sp2, lion, etc.)
> !!!!! write flavor here !!!!!
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> Medium
>
> ------------------------------------------
> * description:
> Average volume not being computed for a track
>
> ------------------------------------------
> * how to reproduce it:
> !!!!! describe steps here !!!!!
> 1. Create a track, check that average volume of track is computed
> 2. Close and reopen session
> 3. Average volume of track is 0
>
> ------------------------------------------------------------------------------
> RSA(R) Conference 2012
> Save $700 by Nov 18
> Register now
> http://p.sf.net/sfu/rsa-sfdev2dev1
> _______________________________________________
> GoFigure2-developers mailing list
> GoF...@li...
> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
|
|
From: Kishore M. <kis...@hm...> - 2011-11-15 05:48:10
|
Please send this email at: gof...@li... >>> IMPORTANT: a precise description of the steps to reproduce the bug is important. >>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it. >>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset. ------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.04, xp sp2, lion, etc.) !!!!! write flavor here !!!!! ------------------------------------------ * severity: (Minor, Medium, Major) Medium ------------------------------------------ * description: Average volume not being computed for a track ------------------------------------------ * how to reproduce it: !!!!! describe steps here !!!!! 1. Create a track, check that average volume of track is computed 2. Close and reopen session 3. Average volume of track is 0 |
|
From: Arnaud G. <arn...@hm...> - 2011-11-14 12:49:58
|
Hi Kishore,
Thanks for reporting!
We have just opened one item in our bug tracker, here:
https://github.com/gofigure2/GoFigure2/issues/114
Best,
Arnaud
On Nov 13, 2011, at 9:56 PM, Kishore Mosaliganti wrote:
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.10)
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> Minor
>
> ------------------------------------------
> * description:
> This is an enhancement than a bug but it elicits an erroneous track
> from
> the user
>
> ------------------------------------------
> * how to reproduce it:
> 1. Switch between Track and Mesh views in the TableWidget
> 2. TrackID is reset to 1 instead of keeping it current
> 3. User automatically continues tracking or segmenting with TrackID=1
> and resets the original meshes TrackID 1 to 0.
>
>
>
> ------------------------------------------------------------------------------
> RSA(R) Conference 2012
> Save $700 by Nov 18
> Register now
> http://p.sf.net/sfu/rsa-sfdev2dev1
> _______________________________________________
> GoFigure2-developers mailing list
> GoF...@li...
> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
|
|
From: Kishore M. <kis...@hm...> - 2011-11-14 02:56:20
|
------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.10) ------------------------------------------ * severity: (Minor, Medium, Major) Minor ------------------------------------------ * description: This is an enhancement than a bug but it elicits an erroneous track from the user ------------------------------------------ * how to reproduce it: 1. Switch between Track and Mesh views in the TableWidget 2. TrackID is reset to 1 instead of keeping it current 3. User automatically continues tracking or segmenting with TrackID=1 and resets the original meshes TrackID 1 to 0. |
|
From: Arnaud G. <arn...@hm...> - 2011-11-13 16:08:10
|
Hi Kishore,
Thanks for reporting!
We have just opened 2 items in our bug tracker, here:
https://github.com/gofigure2/BioFormatMegaCapture/issues/5
https://github.com/gofigure2/BioFormatMegaCapture/issues/6
Best,
Arnaud
On Nov 10, 2011, at 9:30 PM, Kishore Mosaliganti wrote:
> Please send this email at: gof...@li...
>
>>>> IMPORTANT: a precise description of the steps to reproduce the
>>>> bug is important.
>>>> IMPORTANT: if the bug is non-trivial or if it doesn't always
>>>> occur, please let us know and try to describe it.
>>>> IMPORTANT: let us know if the dataset you are using is public.
>>>> Many bugs result from a corrupted dataset.
>
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.04, xp sp2, lion, etc.)
> !!!!! write flavor here !!!!!
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> !!!!! write severity here !!!!!
>
> ------------------------------------------
> * description:
> In Evan's Bioformat script, filetype is printed as PNG when it is
> png. Time-interval is printed as 0.
>
> ------------------------------------------
> * how to reproduce it:
> !!!!! describe steps here !!!!!
> !!!!! 1-click on this button to open this image !!!!!
> !!!!! 2-click on this button to do that !!!!!
> !!!!! 3-click on the image to do that !!!!!
> !!!!! 4- that happens.. !!!!!
>
>
>
> ------------------------------------------------------------------------------
> RSA(R) Conference 2012
> Save $700 by Nov 18
> Register now
> http://p.sf.net/sfu/rsa-sfdev2dev1
> _______________________________________________
> GoFigure2-developers mailing list
> GoF...@li...
> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
|
|
From: Arnaud G. <arn...@hm...> - 2011-11-13 16:04:55
|
Hi Kishore,
Thanks for reporting!
We have just opened an item in our bug tracker, here:
https://github.com/gofigure2/GoFigure2/issues/113
Best,
Arnaud
On Nov 10, 2011, at 10:19 PM, Kishore Mosaliganti wrote:
> Please send this email at: gof...@li...
>
>>>> IMPORTANT: a precise description of the steps to reproduce the
>>>> bug is important.
>>>> IMPORTANT: if the bug is non-trivial or if it doesn't always
>>>> occur, please let us know and try to describe it.
>>>> IMPORTANT: let us know if the dataset you are using is public.
>>>> Many bugs result from a corrupted dataset.
>
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.04, xp sp2, lion, etc.)
> !!!!! write flavor here !!!!!
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> !!!!! write severity here !!!!!
>
> ------------------------------------------
> * description:
> GoFigure2 failed upon changing timepoint right after importing
> megacapture
>
> ------------------------------------------
> * how to reproduce it:
> !!!!! describe steps here !!!!!
> !!!!! 1-click on this button to open this image !!!!!
> !!!!! 2-click on this button to do that !!!!!
> !!!!! 3-click on the image to do that !!!!!
> !!!!! 4- that happens.. !!!!!
>
>
> 1. Create database
> 2. Import megacapture
> 3. Change timepoint
> 4. Crash!
>
>
> ------------------------------------------------------------------------------
> RSA(R) Conference 2012
> Save $700 by Nov 18
> Register now
> http://p.sf.net/sfu/rsa-sfdev2dev1
> _______________________________________________
> GoFigure2-developers mailing list
> GoF...@li...
> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
|
|
From: Kishore M. <kis...@hm...> - 2011-11-12 23:21:47
|
Please send this email at: gof...@li... >>> IMPORTANT: a precise description of the steps to reproduce the bug is important. >>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it. >>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset. ------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.04, xp sp2, lion, etc.) !!!!! write flavor here !!!!! ------------------------------------------ * severity: (Minor, Medium, Major) !!!!! write severity here !!!!! ------------------------------------------ * description: GoFigure2 failed upon changing timepoint right after importing megacapture ------------------------------------------ * how to reproduce it: !!!!! describe steps here !!!!! !!!!! 1-click on this button to open this image !!!!! !!!!! 2-click on this button to do that !!!!! !!!!! 3-click on the image to do that !!!!! !!!!! 4- that happens.. !!!!! 1. Create database 2. Import megacapture 3. Change timepoint 4. Crash! |
|
From: Kishore M. <kis...@hm...> - 2011-11-12 23:21:47
|
Please send this email at: gof...@li... >>> IMPORTANT: a precise description of the steps to reproduce the bug is important. >>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it. >>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset. ------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.04, xp sp2, lion, etc.) !!!!! write flavor here !!!!! ------------------------------------------ * severity: (Minor, Medium, Major) !!!!! write severity here !!!!! ------------------------------------------ * description: In Evan's Bioformat script, filetype is printed as PNG when it is png. Time-interval is printed as 0. ------------------------------------------ * how to reproduce it: !!!!! describe steps here !!!!! !!!!! 1-click on this button to open this image !!!!! !!!!! 2-click on this button to do that !!!!! !!!!! 3-click on the image to do that !!!!! !!!!! 4- that happens.. !!!!! |
|
From: Mathieu M. <mat...@gm...> - 2011-11-10 21:20:58
|
Pushed ! http://packages.qa.debian.org/g/gofigure2/news/20111110T211718Z.html Thanks ! On Thu, Nov 10, 2011 at 5:08 PM, Arnaud Gelas <arn...@hm...> wrote: > Hi all, > > We have just tagged GoFigure2-v0.8.4 which is almost the same as the 0.8.3 > version, except this time (hopefully) the uploaded tarball on sourceforge > matches the release. > > It should help Mathieu Malaterre (debian package maintainer) to update > packages for GoFigure2. > > Best, > Arnaud > > -- Mathieu |
|
From: Nicolas R. <nic...@hm...> - 2011-11-10 21:06:07
|
... and we fixed it there: https://github.com/gofigure2/GoFigure2/commit/f8a1ac7441087a530ca155f34de52d9c10028370 Best, Nicolas On Thu, Nov 10, 2011 at 4:01 PM, Arnaud Gelas <arn...@hm...>wrote: > Hi Kishore, > > Thanks for reporting! > > We have just opened an item in our bug tracker, here: > > https://github.com/gofigure2/GoFigure2/issues/112 > > Best, > Arnaud > > On 11/10/2011 03:52 PM, Kishore Mosaliganti wrote: > > Please send this email at: gof...@li... > > > >>>> IMPORTANT: a precise description of the steps to reproduce the bug is > important. > >>>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, > please let us know and try to describe it. > >>>> IMPORTANT: let us know if the dataset you are using is public. Many > bugs result from a corrupted dataset. > > ------------------------------------------ > > * System information: > > GoFigure2 Version: 0.8.develop > > OS: Linux > > OS Version:(ubuntu 10.04, xp sp2, lion, etc.) > > !!!!! write flavor here !!!!! > > > > ------------------------------------------ > > * severity: (Minor, Medium, Major) > > !!!!! write severity here !!!!! > > > > ------------------------------------------ > > * description: > > Crashing whenever you open a Megacapture file without importing into > database and then change time-points. > > > > > > ------------------------------------------ > > * how to reproduce it: > > !!!!! describe steps here !!!!! > > !!!!! 1-click on this button to open this image !!!!! > > !!!!! 2-click on this button to do that !!!!! > > !!!!! 3-click on the image to do that !!!!! > > !!!!! 4- that happens.. !!!!! > > > > 1. Open a megacapture file not in database > > 2. Change timepoints > > 3. Crash! > > > > > > > ------------------------------------------------------------------------------ > > RSA(R) Conference 2012 > > Save $700 by Nov 18 > > Register now > > http://p.sf.net/sfu/rsa-sfdev2dev1 > > _______________________________________________ > > GoFigure2-developers mailing list > > GoF...@li... > > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > > > > ------------------------------------------------------------------------------ > RSA(R) Conference 2012 > Save $700 by Nov 18 > Register now > http://p.sf.net/sfu/rsa-sfdev2dev1 > _______________________________________________ > GoFigure2-developers mailing list > GoF...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-developers > |
|
From: Arnaud G. <arn...@hm...> - 2011-11-10 21:01:56
|
Hi Kishore,
Thanks for reporting!
We have just opened an item in our bug tracker, here:
https://github.com/gofigure2/GoFigure2/issues/112
Best,
Arnaud
On 11/10/2011 03:52 PM, Kishore Mosaliganti wrote:
> Please send this email at: gof...@li...
>
>>>> IMPORTANT: a precise description of the steps to reproduce the bug is important.
>>>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it.
>>>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset.
> ------------------------------------------
> * System information:
> GoFigure2 Version: 0.8.develop
> OS: Linux
> OS Version:(ubuntu 10.04, xp sp2, lion, etc.)
> !!!!! write flavor here !!!!!
>
> ------------------------------------------
> * severity: (Minor, Medium, Major)
> !!!!! write severity here !!!!!
>
> ------------------------------------------
> * description:
> Crashing whenever you open a Megacapture file without importing into database and then change time-points.
>
>
> ------------------------------------------
> * how to reproduce it:
> !!!!! describe steps here !!!!!
> !!!!! 1-click on this button to open this image !!!!!
> !!!!! 2-click on this button to do that !!!!!
> !!!!! 3-click on the image to do that !!!!!
> !!!!! 4- that happens.. !!!!!
>
> 1. Open a megacapture file not in database
> 2. Change timepoints
> 3. Crash!
>
>
> ------------------------------------------------------------------------------
> RSA(R) Conference 2012
> Save $700 by Nov 18
> Register now
> http://p.sf.net/sfu/rsa-sfdev2dev1
> _______________________________________________
> GoFigure2-developers mailing list
> GoF...@li...
> https://lists.sourceforge.net/lists/listinfo/gofigure2-developers
|
|
From: Kishore M. <kis...@hm...> - 2011-11-10 20:52:25
|
Please send this email at: gof...@li... >>> IMPORTANT: a precise description of the steps to reproduce the bug is important. >>> IMPORTANT: if the bug is non-trivial or if it doesn't always occur, please let us know and try to describe it. >>> IMPORTANT: let us know if the dataset you are using is public. Many bugs result from a corrupted dataset. ------------------------------------------ * System information: GoFigure2 Version: 0.8.develop OS: Linux OS Version:(ubuntu 10.04, xp sp2, lion, etc.) !!!!! write flavor here !!!!! ------------------------------------------ * severity: (Minor, Medium, Major) !!!!! write severity here !!!!! ------------------------------------------ * description: Crashing whenever you open a Megacapture file without importing into database and then change time-points. ------------------------------------------ * how to reproduce it: !!!!! describe steps here !!!!! !!!!! 1-click on this button to open this image !!!!! !!!!! 2-click on this button to do that !!!!! !!!!! 3-click on the image to do that !!!!! !!!!! 4- that happens.. !!!!! 1. Open a megacapture file not in database 2. Change timepoints 3. Crash! |
|
From: Arnaud G. <arn...@hm...> - 2011-11-10 16:08:55
|
Hi all, We have just tagged GoFigure2-v0.8.4 which is almost the same as the 0.8.3 version, except this time (hopefully) the uploaded tarball on sourceforge matches the release. It should help Mathieu Malaterre (debian package maintainer) to update packages for GoFigure2. Best, Arnaud |
|
From: Arnaud G. <arn...@hm...> - 2011-10-06 13:15:21
|
Hi all, I have just fixed the Superbuild functionality on the develop branch (at least it works on my Mac 10.5 now), but I still get the following compilation error: [ 26%] Building CXX object Code/GUI/lib/CMakeFiles/QGoGui.dir/ QGoTabImageView3DwT.cxx.o In file included from /Library/Frameworks/QtGui.framework/Headers/ QtGui:111, from /Users/AJG23/GITROOT/GoFigure2/Code/GUI/lib/ TransferFunctionEditor/GoTransferFunctionEditorWidget.h:81, from /Users/AJG23/GITROOT/GoFigure2/Code/GUI/lib/ QGoTabImageView3DwT.cxx:117: /Library/Frameworks/QtGui.framework/Headers/qitemdelegate.h:124:40: error: macro "check" passed 3 arguments, but takes just 1 /Library/Frameworks/QtGui.framework/Headers/qitemdelegate.h:123: error: expected ';' before 'const' make[5]: *** [Code/GUI/lib/CMakeFiles/QGoGui.dir/ QGoTabImageView3DwT.cxx.o] Error 1 make[4]: *** [Code/GUI/lib/CMakeFiles/QGoGui.dir/all] Error 2 make[3]: *** [all] Error 2 make[2]: *** [GoFigure2-prefix/src/GoFigure2-stamp/GoFigure2-build] Error 2 make[1]: *** [CMakeFiles/GoFigure2.dir/all] Error 2 make: *** [all] Error 2 The process "/usr/bin/make" exited with code 2. Error while building project GOFIGURE2 (target: Desktop) When executing build step 'Make' I don't really understand why I get this error. any idea? thanks, Arnaud |
|
From: Arnaud G. <arn...@hm...> - 2011-10-06 13:06:25
|
It seems that the problem came from #include <QtGui> by removing it and adding the appropriate includes, it now works properly on my Mac... Sorry for the noise, Arnaud On Oct 6, 2011, at 2:40 PM, Arnaud Gelas wrote: > Hi all, > > I have just fixed the Superbuild functionality on the develop branch > (at least it works on my Mac 10.5 now), > but I still get the following compilation error: > > [ 26%] Building CXX object Code/GUI/lib/CMakeFiles/QGoGui.dir/ > QGoTabImageView3DwT.cxx.o > In file included from /Library/Frameworks/QtGui.framework/Headers/ > QtGui:111, > from /Users/AJG23/GITROOT/GoFigure2/Code/GUI/lib/ > TransferFunctionEditor/GoTransferFunctionEditorWidget.h:81, > from /Users/AJG23/GITROOT/GoFigure2/Code/GUI/lib/ > QGoTabImageView3DwT.cxx:117: > /Library/Frameworks/QtGui.framework/Headers/qitemdelegate.h:124:40: > error: macro "check" passed 3 arguments, but takes just 1 > /Library/Frameworks/QtGui.framework/Headers/qitemdelegate.h:123: > error: expected ';' before 'const' > make[5]: *** [Code/GUI/lib/CMakeFiles/QGoGui.dir/ > QGoTabImageView3DwT.cxx.o] Error 1 > make[4]: *** [Code/GUI/lib/CMakeFiles/QGoGui.dir/all] Error 2 > make[3]: *** [all] Error 2 > make[2]: *** [GoFigure2-prefix/src/GoFigure2-stamp/GoFigure2-build] > Error 2 > make[1]: *** [CMakeFiles/GoFigure2.dir/all] Error 2 > make: *** [all] Error 2 > The process "/usr/bin/make" exited with code 2. > Error while building project GOFIGURE2 (target: Desktop) > When executing build step 'Make' > > I don't really understand why I get this error. > any idea? > > thanks, > Arnaud |
|
From: Arnaud G. <arn...@hm...> - 2011-07-28 21:31:26
|
Hi all,
On the behalf of the GoFigure2 development team, I am proud to announce
the release of a new release of GoFigure2.
Packages are still being generated and little by little uploaded on the
sourceforge website:
https://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.8.2/
If you have any question or trouble, please let us know!
Thanks!!
Happy GoFigure2'ing
Arnaud
---
Changes:
* fix bug in the mesh reconstruction
* fix packaging bugs on Mac, Linux (for fedora distribution)
* performance improvements when scrolling in images in the presence
of meshes.
|
|
From: Arnaud G. <arn...@hm...> - 2011-05-05 21:19:27
|
Hi Kishore,
If you have a github account, you can create a bug report on the
following page:
https://github.com/gofigure2/GoFigure2/issues
If you don't, you can send us an email on the mailing list and we will
open it for you.
Best,
Arnaud
On 05/05/2011 05:13 PM, Kishore Mosaliganti wrote:
> Hi all,
>
> Where do we file bug reports in Master branch of GoFigure?
>
> Kishore
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From: Kishore M. <kis...@gm...> - 2011-05-05 21:13:40
|
Hi all, Where do we file bug reports in Master branch of GoFigure? Kishore |
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From: Arnaud G. <arn...@hm...> - 2011-04-19 13:35:11
|
Hi GoFigure2 users & developers,
Thanks to Mathieu Malaterre, GoFigure2 has entered Debian unstable:
see http://packages.qa.debian.org/g/gofigure2.html
Thanks Mathieu!!!
Cheers,
Arnaud
---
To install GoFigure2 on Debian:
# apt-get install gofigure2
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From: Arnaud G. <arn...@hm...> - 2011-03-31 13:41:28
|
Hi Antonin,
On Mar 31, 2011, at 5:50 AM, Antonin Perrot-Audet wrote:
> Hi !
>
> I developped a pipeline for large images processing, and especially,
> nuclei segmentation. There is still some parameter tuning to do, but it
> is working nicely.
Excellent!
> It is now coded as a main program, and each box is an itk filter. I
> joined a schematic of the pipeline. Can you guys (Nico? Arnaud?) tell me
> under which form you need it ?
The first things (on your side, if you want your code to be integrated
as it
is in GoFigure2):
- Are you allowed to release this source code?
- What is the license of this source code?
Depending on the answers to these questions, there are different ways.
Let's assume everything works fine!
Since your pipeline is entirely performed in ITK, what about submitting
an article to the Insight Journal? (The code can stay on github for
instance,
and be reviewed by experts).
Lydie is currently working on an easy way to integrate new algorithm, where
you only need to implement couples of methods (for the time being, then
later
you would only need to provide the algorithm code and one xml file).
Lydie can guide you!
> I was thinking of something that could be amazing : as all my filters
> are 2D/3D, do you think it would be possible for the user to select a
> 2D(3D?) region, and send it to the pipeline, to test it, and see the
> results quickly, before starting the process on a big (big big) image ?
The first thing we would integrate into GoFigure2 is one segmentation
procedure where the user would click
- either the center of a cell and a radius, then the cell would be
segmented and extracted (this would by-pass your seed selection process)
- either a point in the image with a radius, then your would
pipeline would
work on a ROI.
Then we could work on something funkier, and nicer as you mention!
> About mutlithreading : that would be cool to start one process per
> subimage, and force the part if the pipeline dealing with subimages to
> be monothreaded, so we would process up to N nucleis at the time... but
> it is not done yet.
>
> That would also be cool to be able to change part of the pipeline
> dynamically (nuclei detection/nuclei segmentation).
>
>
Best,
Arnaud
> --
> Antonin Perrot-Audet
> Electrical Engineering& Computer Sciences, INSA Lyon
> M2 GEGP Signal& Image Processing, INSA Lyon, UCBL, Centrale Lyon
>
> <CellDetectionPipe.pdf><ATT00001.txt><ATT00002.txt>
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From: Antonin Perrot-A. <ant...@gm...> - 2011-03-31 09:50:43
|
Hi ! I developped a pipeline for large images processing, and especially, nuclei segmentation. There is still some parameter tuning to do, but it is working nicely. It is now coded as a main program, and each box is an itk filter. I joined a schematic of the pipeline. Can you guys (Nico? Arnaud?) tell me under which form you need it ? I was thinking of something that could be amazing : as all my filters are 2D/3D, do you think it would be possible for the user to select a 2D(3D?) region, and send it to the pipeline, to test it, and see the results quickly, before starting the process on a big (big big) image ? About mutlithreading : that would be cool to start one process per subimage, and force the part if the pipeline dealing with subimages to be monothreaded, so we would process up to N nucleis at the time... but it is not done yet. That would also be cool to be able to change part of the pipeline dynamically (nuclei detection/nuclei segmentation). -- Antonin Perrot-Audet Electrical Engineering& Computer Sciences, INSA Lyon M2 GEGP Signal& Image Processing, INSA Lyon, UCBL, Centrale Lyon |
