Currently the mouse-wheel-based scroll down is broken because of a typo. I'm attaching a patch to fix the typo and another patch to space out the code to make such typos more visible.
Simple bug demo:
plot this:
set style data linespoints
set grid
set xtics
set ytics nomirror
set y2tics
plot '-' notitle axes x1y2 , '-' notitle
1 1
2 4
3 9
4 16
5 25
e
1 2
2 4
3 6
4 8
5 10
e
use the mouse wheel to scroll up/down. Observe rescaling of y2 on the down strokes
Silly sourceforge only lets me attach one file. Here's the second patch.