bowtie2: unrecognized option '--auto'

Closing the gaps in scaffolds with preassembled contigs

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#1 bowtie2: unrecognized option '--auto'

Milestone: 1.0

Status: open

Owner: nobody

Labels: None

Updated: 2017-06-14

Created: 2015-12-18

Creator: Sven Klages

Private: No

Hi,
program crashes with:

/package/sequencer/bin/../bowtie/bin/../2.2.6/bin/bowtie2-align-s: unrecognized option '--auto'
Bowtie 2 version 2.2.6 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)

best,
Sven

Discussion

Andrey Yurchenko - 2017-06-14

The same problem for me
bowtie2-2.2.9/bowtie2-align-s: unrecognized option '--auto'

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bowtie2: unrecognized option '--auto'

Closing the gaps in scaffolds with preassembled contigs

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#1 bowtie2: unrecognized option '--auto'

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