User Activity

  • Posted a comment on ticket #4 on GMcloser

    Thank you for providing the useful comment. I would consider to use E-MEM as a replacement of MUMMER/Nucmer in the future. Currently GMcloser can use blastn in place of Nucmer by using the option -b.

  • Posted a comment on ticket #2 on GMcloser

    GMcloser uses Getopt::Long module in perl. Your perl environment seems not to use the module properly. If possible, try to install another version of perl and use it. Shunichi ----- Original Message ----- [tickets:#2] GMcloser argument errors Status: open Milestone: 1.0 Labels: Error Created: Fri Oct 13, 2017 10:30 PM UTC by Zachary Stewart Last Updated: Fri Oct 13, 2017 10:30 PM UTC Owner: Shunichi Kosugi Hi, I am unable to get GMcloser 1.6 to accept arguments and begin the program, and various...

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Personal Data

Username:
s-kosugi
Joined:
2012-02-24 01:54:20

Projects

This is a list of open source software projects that Shunichi Kosugi is associated with:

  • GMcloser Closing the gaps in scaffolds with preassembled contigs Last Updated:
  • NESmapper Prediction of CRM1-dependent nuclear export signals Last Updated:
  • coval Improving the quality of short read alignment data Last Updated:

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