fusion-test

fusion_test.sh is a shell script to detect fusion in DNAseq or RNAseq. It uses chimerascan, SOAPfuse, MapSplice2, FusionMap, fusioncatcher, TopHat and EricScript. The output files of chimerascan are further annotated by Jinja and Pegasus Fusion.

***Updated***
Note: EricScript uses old version of Samtools. Download the modified program and Samtools-0.1.19 here.
An error in the configuration for fusioncathcer is corrected.
FusionMap has been deprecated. It is changed to Oshell.
The old FusionMap is moved to fusionmap.sh.
MapSplice is updated to 2.2.2.

Project Activity

See All Activity >

Follow fusion-test

fusion-test Web Site

You Might Also Like

SKUDONET Open Source Load Balancer

Take advantage of Open Source Load Balancer to elevate your business security and IT infrastructure with a custom ADC Solution.

SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.

Learn More

Rate This Project