Re: [Fink-devel] missing dependencies from rmod updates

[Jack H. <how...@gm...>]

BABA,
     The download for bioconductor-limma-r33-3.28.5-1 fails. Looks like the
version is wrong for the 3.3 Bioconductor release and we need the change...

Index: rmods/bioconductor-limma-r.info
===================================================================
RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/rmods/
bioconductor-limma-r.info,v
retrieving revision 1.5
diff -r1.5 bioconductor-limma-r.info
5c5
< Version: 3.28.5
---
> Version: 3.28.6
12c12
< Source-MD5: 0692fa171651f40f5749c932796b30a5
---
> Source-MD5: a33ac32d02811c1c4cd51a32276481e1

       Jack

On Sun, Jun 12, 2016 at 9:04 PM, 美彦 馬場 <bab...@ma...> wrote:

> Jack,
>
>
> 2016/06/13 5:52、Jack Howarth <how...@gm...> のメール：
>
> > Baba,
> >      It appears that during your recent rmod updates to support R 3.3
> that you neglected to commit the new dependencies on some of the package
> updates. For example,
> >
> > WARNING: While resolving dependency "cran-magrittr-r33" for package
> "cran-stringr-r33-1.0.0-1", package "cran-magrittr-r33" was not found.
> > Can't resolve dependency "cran-magrittr-r33" for package
> "cran-stringr-r33-1.0.0-1" (no matching packages/versions found)
> >
> > I believe 'fink selfupdate' for the cvs mode should tell you which files
> present in your local libs/rmods subdirectory haven't been committed to the
> tree yet.
> >         Jack
>
>
> Thank you for letting me know.  I am now having problems with:
>
> bioconductor-preprocessorcore-r.info
> bioconductor-protgenerics-r.info
> cran-ggally-r.info
> cran-magrittr-r.info
> cran-nloptr-r.info  (downloads another source during installation)
> cran-stringi-r.info
>
> I will fix them today.
>
> --
> BABA Yoshihiko
>
>
>