[cvs] dists/10.7/stable/main/finkinfo/sci viennarna-10.7.info, NONE, 1.1 viennarna.info, 1.2, NONE

[Daniel M. <dm...@us...>]

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory vz-cvs-3.sog:/tmp/cvs-serv7177/10.7/main/finkinfo/sci

Added Files:
	viennarna-10.7.info 
Removed Files:
	viennarna.info 
Log Message:
hardcodes features related to "a perl found in PATH", which is uncontrolled, and then makes other assumptions based on expected system-perl version. So hardcode perl interp as system-perl one, and set deps accordingly. Which means each system-version will be different results (package was already written that way anyway), so need to have *different* %r per platform (per ".deb must give same results for same %r" policy)


--- NEW FILE: viennarna-10.7.info ---
Package: viennarna
Version: 1.8.5
Revision: 205
Distribution: 10.7
Source: http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-%v.tar.gz   
Source-MD5: cd70d63cc1be928a5f0973bd6c211e96
SourceDirectory: ViennaRNA-%v
InfoDocs: RNAlib.info
ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info   CC=/usr/bin/gcc
Depends: system-perl5123
UpdatePOD: true
Description: RNA structural prediction
DescDetail: <<
The Vienna RNA Package consists of a C code library 
and several stand-alone programs for the
prediction and comparison of RNA secondary structures. 
The package allows you to
- predict minimum free energy secondary structures
- calculate the partition function for the ensemble of structures
- calculate suboptimal structures in a given energy range
- predict consensus secondary structures from a multiple sequence alignment
- predict melting curves
- search for sequences folding into a given structure
- compare two secondary structures 
-
The package includes a Perl5 module that gives access to almost all
functions of the C library from Perl. 
-
The following executables are provided in /sw/bin:
RNAfold -- predict minimum energy secondary structures and pair probabilities
RNAeval -- evaluate energy of RNA secondary structures
RNAheat -- calculate the specific heat (melting curve) of an RNA sequence
RNAinverse -- inverse fold (design) sequences with predefined structure
RNAdistance -- compare secondary structures
RNApdist -- compare base pair probabilities
RNAsubopt -- complete suboptimal folding
RNAplot -- RNA structure drawings in PostScript, SVG, or GML
RNAcofold -- predict hybrid structure of two sequences
RNAduplex -- predict possible hybridization sites between two sequences
RNAalifold -- predict the consensus structure of several aligned sequences
RNALfold -- predict locally stable structure of long sequences
RNAplfold -- compute average pair probabilities for local base pairs  
RNApaln -- fast structural alignment of RNA sequences using string alignments
Kinfold -- explores the folding kinetics of RNA
RNAforester -- computes tree-alignments of RNA structures
Several small but helpful Perl Utilities are in /sw/share/ViennaRNA/bin
which is not added to your PATH by default.
--
For more detailed information on these please enter the command
info RNA .
<<
PatchScript: <<
#!/bin/zsh -efv
perl -pi -e 's|Version 1.6|Version 1.8|g' README
perl -pi -e 's|Version 1.6|Version 1.8|g' man/RNAlib.texinfo
<<
ConfigureParams:
SetCFLAGS: -I%p/include
CompileScript: <<
#!/bin/zsh -efv
export ARCHFLAGS=''
./configure %c PerlCmd=/usr/bin/perl5.12
make
<<
InstallScript: <<
#!/bin/zsh -efv
perl -pi.bak -e 's|/usr/local|%p/share|g' Perl/Makefile.perl
perl -pi.bak -e 's;/usr/share/man;%p/share/man;g' Perl/Makefile.perl
mkdir -p %i/share/man/man3/
mkdir -p %i/lib
mkdir -p %i/include
perl -pi.bak -e 's|%p/|%i/|g' RNAforester/g2-0.70/Makefile
if [[ $(sw_vers -productVersion) < 10.6 ]]; then
    make -j1 install DESTDIR=%d INSTALLPRIVLIB=%p/lib/perl5/5.8.8/ INSTALLARCHLIB=%p/lib/perl5/5.8.8/darwin-thread-multi-2level/ INSTALLSITELIB=%p/lib/perl5/5.8.8/ INSTALLSITEARCH=%p/lib/perl5/5.8.8/darwin-thread-multi-2level INSTALLSCRIPT=%p/share/viennarna/scripts
elif [[ $(sw_vers -productVersion) < 10.7 ]]; then
    make -j1 install DESTDIR=%d INSTALLPRIVLIB=%p/lib/perl5/5.10.0/ INSTALLARCHLIB=%p/lib/perl5/5.10.0/darwin-thread-multi-2level/ INSTALLSITELIB=%p/lib/perl5/5.10.0/ INSTALLSITEARCH=%p/lib/perl5/5.10.0/darwin-thread-multi-2level INSTALLSCRIPT=%p/share/viennarna/scripts
else
    make -j1 install DESTDIR=%d INSTALLPRIVLIB=%p/lib/perl5/5.12.3/ INSTALLARCHLIB=%p/lib/perl5/5.12.3/darwin-thread-multi-2level/ INSTALLSITELIB=%p/lib/perl5/5.12.3/ INSTALLSITEARCH=%p/lib/perl5/5.12.3/darwin-thread-multi-2level INSTALLSCRIPT=%p/share/viennarna/scripts
fi

<<
#
###############################################################################
#
SplitOff: <<
Package: %N-dev
BuildDependsOnly: True
Files: <<
include/*.h
include/ViennaRNA/*.h
lib/*.a
<<
<<
###############################################################################
DocFiles: AUTHORS ChangeLog COPYING INSTALL INSTALL.configure NEWS README THANKS
License: GPL
Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/
Maintainer: W. G. Scott <wg...@us...>

--- viennarna.info DELETED ---