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Re: [Fink-beginners] fink install arb: ld: segments overlap
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From: Ben H. <bh...@gm...> - 2010-10-14 22:18:11
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Unfortunately there is no 10.6-compatible build of ARB on fink yet. Still needs some work. -Ben On Thu, Oct 14, 2010 at 2:14 PM, P Fudd <fi...@ch...> wrote: > Hello! > > I'm trying to install arb on a brand-new mac pro, and the compilation > process dies in the linking step with an error I've never seen before: > > # uname -a > Darwin shadchan.local 10.4.2 Darwin Kernel Version 10.4.2: Tue Jul 27 > 21:17:17 PDT 2010; root:xnu-1504.7.60~1/RELEASE_X86_64 x86_64 > # g++ --version > i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5664) > Copyright (C) 2007 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > # sw_vers > ProductName: Mac OS X > ProductVersion: 10.6.4 > BuildVersion: 10F2521 > # fink selfupdate > ...(snip successful update)... > # fink install arb > ...(snip successful g++ compilation stages)... > -------------------- Checking bin/arb_ntree > Target 'bin/arb_ntree' not found > -> rebuilding bin/arb_ntree (Wed Dec 31 15:59:59 1969) > Link bin/arb_ntree > g++ -DDARWIN -DNO_REGEXPR -no-cpp-precomp -DHAVE_BOOL -L/sw/lib > -Wl,-stack_size -Wl,10000000 -Wl,-stack_addr -Wl,c0000000 -o bin/arb_ntree > -L/sw/src/fink.build/arb-20071207-1007/./LIBLINK -L/sw/lib > PROBE_COM/client.a ARB_GDE/ARB_GDE.a AWTC/AWTC.a AWTI/AWTI.a CAT/CAT.a > GENOM/GENOM.a GENOM_IMPORT/GENOM_IMPORT.a ISLAND_HOPPING/ISLAND_HOPPING.a > MERGE/MERGE.a MULTI_PROBE/MULTI_PROBE.a NTREE/NTREE.a > PRIMER_DESIGN/PRIMER_DESIGN.a PROBE_DESIGN/PROBE_DESIGN.a > SEQ_QUALITY/SEQ_QUALITY.a SERVERCNTRL/SERVERCNTRL.a SL/AW_NAME/AW_NAME.a > SL/HELIX/HELIX.a SL/DB_SCANNER/DB_SCANNER.a SL/FILE_BUFFER/FILE_BUFFER.a > STAT/STAT.a XML/XML.a -lARBDB -lstdc++ -lAW -lAWT -L/usr/X11R6/lib > -L/sw/lib -lXm -lXt -lX11 -lXext -lXp -lc -lXmu -lXi -lGLU -lGL -lXext > -lX11 -lGLEW > -Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib > ld: segments overlap: __PAGEZERO (0x00000000 + 0x100000000) and > __UNIXSTACK (0xB0000000 + 0x10000000) > collect2: ld returned 1 exit status > make: *** [bin/arb_ntree] Error 1 > ### execution of /var/tmp/tmp.2.e7Rc1a failed, exit code 2 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-arb-20071207-1007 > (Reading database ... 171691 files and directories currently installed.) > Removing fink-buildlock-arb-20071207-1007 ... > Failed: phase compiling: arb-20071207-1007 failed > > Before reporting any errors, please run "fink selfupdate" and > try again. If you continue to have issues, please check to see if the > FAQ on fink's website solves the problem. If not, ask on the fink-users > or fink-beginners mailing lists, with a carbon copy to the maintainer: > > Ben Hines <bhines@....> > > Note that this is preferable to emailing the maintainer directly, since > most fink package maintainers do not have access to all possible > hardware and software configurations. > > > 104.615u 9.487s 1:56.82 97.6% 0+0k 14+1268io 0pf+0w > # > > For the full compile output, please see this Pastebin entry: > http://pastebin.com/9UuPqhWK > (This pastebin entry will expire in a month: 2010-11-14) > |