CodaChrome is a tool for visually exploring how the proteome of a bacterium of interest relates to every other finished bacterial genome in GenBank.

Features

  • Gene/Species "Select" Tool - real time substring searches
  • "Sort" rows by a single protein, segment of adjacent proteins or whole proteome
  • "Normalized Sort" allows you to sort by whole proteome identity normalized by replicon length
  • "Save View" - Saves current view to an image file
  • "Blast Online" searches blast alignments on NCBI's website
  • Zoom in/out, view selection, zoom all out
  • Ctrl/Command click on gene arrow and drag to select large segments
  • Gene and Species arrows can can be click dragged or moved with arrow keys

Project Samples

Salmonella 14028S Pathogenicity Island

Project Activity

See All Activity >

Follow CodaChrome

CodaChrome Web Site

Other Useful Business Software
Custom VMs From 1 to 96 vCPUs With 99.95% Uptime Icon
Custom VMs From 1 to 96 vCPUs With 99.95% Uptime

General-purpose, compute-optimized, or GPU/TPU-accelerated. Built to your exact specs.

Live migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
Try Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of CodaChrome!

Additional Project Details

Registered

2012-12-06
Report inappropriate content