[Cml-cvs] jumbo50/src/org/xmlcml/cml/legacy/react RXNConverter.java,1.4,1.5

[Peter Murray-R. <pe...@us...>]

Update of /cvsroot/cml/jumbo50/src/org/xmlcml/cml/legacy/react
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv20453/src/org/xmlcml/cml/legacy/react

Modified Files:
	RXNConverter.java 
Log Message:
refactored reactions and forward references from elements to tools

Index: RXNConverter.java
===================================================================
RCS file: /cvsroot/cml/jumbo50/src/org/xmlcml/cml/legacy/react/RXNConverter.java,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** RXNConverter.java	6 Nov 2005 21:41:31 -0000	1.4
--- RXNConverter.java	30 Nov 2005 15:51:16 -0000	1.5
***************
*** 27,31 ****
  import org.xmlcml.cml.element.CMLReaction;
  import org.xmlcml.cml.element.CMLScalar;
! import org.xmlcml.cml.element.ProductReactantList;
  
  /**
--- 27,31 ----
  import org.xmlcml.cml.element.CMLReaction;
  import org.xmlcml.cml.element.CMLScalar;
! import org.xmlcml.cml.tools.ReactionTool;
  
  /**
***************
*** 254,259 ****
      
      void mapAtoms() throws CMLException {
!     	List reactantAtoms = ProductReactantList.getAtoms(reactantList);
!     	List productAtoms = ProductReactantList.getAtoms(productList);
      	// hash the target atomMapIds
      	Map<String, CMLAtom> productMap = new HashMap<String, CMLAtom>();
--- 254,259 ----
      
      void mapAtoms() throws CMLException {
!     	List reactantAtoms = ReactionTool.getAtoms(reactantList);
!     	List productAtoms = ReactionTool.getAtoms(productList);
      	// hash the target atomMapIds
      	Map<String, CMLAtom> productMap = new HashMap<String, CMLAtom>();