[Cml-cvs] jumbo50/src/org/xmlcml/cml/legacy/react/macie SubReaction.java,1.2,1.3

[Ramin <iam...@us...>]

Update of /cvsroot/cml/jumbo50/src/org/xmlcml/cml/legacy/react/macie
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv31420/src/org/xmlcml/cml/legacy/react/macie

Modified Files:
	SubReaction.java 
Log Message:
removed double lines

Index: SubReaction.java
===================================================================
RCS file: /cvsroot/cml/jumbo50/src/org/xmlcml/cml/legacy/react/macie/SubReaction.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** SubReaction.java	23 Sep 2005 11:19:45 -0000	1.2
--- SubReaction.java	26 Sep 2005 13:09:29 -0000	1.3
***************
*** 5,11 ****
--- 5,13 ----
  import java.util.logging.Level;
  import java.util.logging.Logger;
+ 
  import nu.xom.Document;
  import nu.xom.Element;
  import nu.xom.Elements;
+ 
  import org.xmlcml.cml.base.CMLException;
  import org.xmlcml.cml.element.AtomMatcher;
***************
*** 117,125 ****
            CMLMolecule molecule = (CMLMolecule) molecules.get(i);
            if (mc.getParams().getAddH ()) {
!               molecule.adjustHydrogenCountsToValency("");
                molecule.addCalculatedCoordinatesForHydrogens(CMLMolecule.D2);
            }
            if (mc.getParams().getAddFormulae ()) {
! 				molecule.getCalculatedFormula(CMLMolecule.USE_EXPLICIT_HYDROGENS);
  			}
        }
--- 119,127 ----
            CMLMolecule molecule = (CMLMolecule) molecules.get(i);
            if (mc.getParams().getAddH ()) {
!               molecule.adjustHydrogenCountsToValency(CMLMolecule.hydrogenControl.NO_EXPLICIT_HYDROGENS);
                molecule.addCalculatedCoordinatesForHydrogens(CMLMolecule.D2);
            }
            if (mc.getParams().getAddFormulae ()) {
! 				molecule.getCalculatedFormula(CMLMolecule.hydrogenControl.USE_EXPLICIT_HYDROGENS);
  			}
        }
***************
*** 141,142 ****
--- 143,145 ----
  
  }
+