Re: [cml/ccml-discuss] Validation problem - was Namespaces [was: CMLRSS plugin]

[Tobias H. <tob...@un...>]

we now additionally tried it out unsing:
CMLBuilder builder =3D new CMLBuilder(false);
still getting the same error, so i dont think it is a validation problem.=
..
tobias

Egon Willighagen wrote:
>> At 20:09 08/03/2006, Egon Willighagen wrote:
>> I have now replaced this by:
>> <cml:molecule xmlns:cml=3D"http://www.xml-cml.org/schema"
>>   xsi:schemaLocation=3D"http://www.xml-cml.org/schema ../../schema.xsd=
"
>>   xmlns:xsi=3D"http://www.w3.org/2001/XMLSchema-instance"
>>  >
>> <cml:atomArray atomID=3D"a1 a2 a3 a4" elementType=3D"C C O O"
>> formalCharge=3D"0 0 0 0" />
>> <cml:bondArray atomRef1=3D"a1 a2 a2" atomRef2=3D"a2 a3 a4" order=3D"1 =
2 1" />
>> </cml:molecule>
>>
>> in schema23/examples/complex/arrays.xml
>>
>> and now it runs through ExamplesTest.
>>
>> I think your Bioclipse environment is trying to validate it against
>> something - not sure what. I have tried different elements and they
>> all fail. So it is like trying to validate with an empty DTD or
>> schema (or perhaps the wrong schema). I don't know *what* software is
>> giving the error because XOM is not a validating parser. Do you have
>> a validating parser bound into it?
>>    =20
>
> No, it's just using the CMLBuilder with this code:
>
> CMLBuilder builder =3D new CMLBuilder();
> CMLElement cmlElement =3D null;
> try {
>   cmlElement =3D (CMLElement)builder.parseString(localResourceString);
> } catch (IOException e) {
>   e.printStackTrace();
>   setParsed(false);
>   return false;
> }
>
> Where localResourceString is the String with the CML content.
>
> Is there a possibility to explicitely not use validation?
>
> Egon
>
>
>
>
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--=20
Tobias Helmus
Junior Research Group for Applied Bioinformatics (http://almost.cubic.uni=
-koeln.de/jrg)
Cologne University BioInformatics Center (http://www.cubic.uni-koeln.de)
Z=FClpicher Str. 47
50674 Cologne
Tel: +49(0)221-470-7428 / +49(0)221-2913909  =20
Fax: +49 (0) 221-470-7786

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