Re: [cml/ccml-discuss] Validation problem - was Namespaces [was: CMLRSS plugin]

[Egon W. <e.w...@sc...>]

> At 20:09 08/03/2006, Egon Willighagen wrote:
> I have now replaced this by:
> <cml:molecule xmlns:cml="http://www.xml-cml.org/schema"
>   xsi:schemaLocation="http://www.xml-cml.org/schema ../../schema.xsd"
>   xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
>  >
> <cml:atomArray atomID="a1 a2 a3 a4" elementType="C C O O"
> formalCharge="0 0 0 0" />
> <cml:bondArray atomRef1="a1 a2 a2" atomRef2="a2 a3 a4" order="1 2 1" />
> </cml:molecule>
>
> in schema23/examples/complex/arrays.xml
>
> and now it runs through ExamplesTest.
>
> I think your Bioclipse environment is trying to validate it against
> something - not sure what. I have tried different elements and they
> all fail. So it is like trying to validate with an empty DTD or
> schema (or perhaps the wrong schema). I don't know *what* software is
> giving the error because XOM is not a validating parser. Do you have
> a validating parser bound into it?

No, it's just using the CMLBuilder with this code:

CMLBuilder builder = new CMLBuilder();
CMLElement cmlElement = null;
try {
  cmlElement = (CMLElement)builder.parseString(localResourceString);
} catch (IOException e) {
  e.printStackTrace();
  setParsed(false);
  return false;
}

Where localResourceString is the String with the CML content.

Is there a possibility to explicitely not use validation?

Egon