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From: <p_a...@us...> - 2008-10-27 22:55:28
|
Revision: 142
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=142&view=rev
Author: p_ansell
Date: 2008-10-27 22:10:14 +0000 (Mon, 27 Oct 2008)
Log Message:
-----------
PARTIALLY BROKEN: have included static rdf/xml strings almost working, replacements are just not going as planned for them yet
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-27 10:15:24
|
Revision: 141
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=141&view=rev
Author: p_ansell
Date: 2008-10-27 10:12:25 +0000 (Mon, 27 Oct 2008)
Log Message:
-----------
PARTIALLY BROKEN: most of the way through a revamp of the custom query system to allow definition of new queries completely using configuration files
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-26 05:59:42
|
Revision: 140
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=140&view=rev
Author: p_ansell
Date: 2008-10-26 05:58:05 +0000 (Sun, 26 Oct 2008)
Log Message:
-----------
normalise license declarations and add in removal from blacklist, as well as making thread related bits into a java class
Modified Paths:
--------------
trunk/README
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/index.html
trunk/src/war/jsp-bio2rdf/bio2rdf-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-all-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-category-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biocarta-pathway-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl-v1.jsp
trunk/src/war/jsp-bio2rdf/biopax2bpl.jsp
trunk/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-g2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-p2rdf.jsp
trunk/src/war/jsp-bio2rdf/ensembl-t2rdf.jsp
trunk/src/war/jsp-bio2rdf/fulltext2rdf.jsp
trunk/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/go-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-composite2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-kgml2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-kgml2rdf.xsl
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
trunk/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
trunk/src/war/jsp-bio2rdf/mesh-nih2rdf.jsp
trunk/src/war/jsp-bio2rdf/mesh2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-gi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubchem2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/obo-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/obo2rdf.jsp
trunk/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-xref2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/search-rdfdata.jsp
trunk/src/war/jsp-bio2rdf/search-v1.jsp
trunk/src/war/jsp-bio2rdf/search.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-header2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-rdf2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/wsdl-authority.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
trunk/src/war/jsp-includes/copyright.jspf
trunk/src/war/robots.txt
trunk/src/war/test-regexmethods.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
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From: <p_a...@us...> - 2008-10-23 06:36:59
|
Revision: 139
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=139&view=rev
Author: p_ansell
Date: 2008-10-23 06:36:51 +0000 (Thu, 23 Oct 2008)
Log Message:
-----------
add in HTTP 400 status code page for requests which are not valid
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-22 10:21:44
|
Revision: 138
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=138&view=rev
Author: p_ansell
Date: 2008-10-22 10:21:36 +0000 (Wed, 22 Oct 2008)
Log Message:
-----------
add debugging of which IP's are actually being sourced for given DNS addresses
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2008-10-22 04:35:15
|
Revision: 137
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=137&view=rev
Author: p_ansell
Date: 2008-10-22 04:35:06 +0000 (Wed, 22 Oct 2008)
Log Message:
-----------
fix bug with useSparqlGraph and tune log4j.properties
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-22 03:21:40
|
Revision: 136
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=136&view=rev
Author: p_ansell
Date: 2008-10-22 03:21:30 +0000 (Wed, 22 Oct 2008)
Log Message:
-----------
add in demo rdf file and implement automatic blacklist expiry so that endpoints aren't permanently blacklisted in long running servers
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2008-10-20 09:46:13
|
Revision: 135
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=135&view=rev
Author: p_ansell
Date: 2008-10-20 09:43:33 +0000 (Mon, 20 Oct 2008)
Log Message:
-----------
change to a different URL for gpl-2.0
Modified Paths:
--------------
trunk/README
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From: <p_a...@us...> - 2008-10-20 08:17:28
|
Revision: 134
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=134&view=rev
Author: p_ansell
Date: 2008-10-20 08:14:46 +0000 (Mon, 20 Oct 2008)
Log Message:
-----------
add gpl sources, and add in parallel querying
Modified Paths:
--------------
trunk/README
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/images/title2.jpg
trunk/src/war/index.html
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
trunk/src/war/scraper.rdf
Added Paths:
-----------
trunk/gpl-v2.0.txt
trunk/gpl-v3.txt
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
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From: <p_a...@us...> - 2008-10-19 05:12:01
|
Revision: 133
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=133&view=rev
Author: p_ansell
Date: 2008-10-19 05:11:57 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
add svn Id to atlas2rdf.jsp as well
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/atlas2rdf.jsp
Property Changed:
----------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-19 05:08:51
|
Revision: 132
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=132&view=rev
Author: p_ansell
Date: 2008-10-19 05:08:38 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
add Id from svn to build.xml
Modified Paths:
--------------
trunk/build.xml
Property Changed:
----------------
trunk/build.xml
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From: <p_a...@us...> - 2008-10-19 05:02:40
|
Revision: 131
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=131&view=rev
Author: p_ansell
Date: 2008-10-19 05:02:25 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
tag 0.2.0 and add a basic branches folder back
Added Paths:
-----------
branches/
tags/0.2.0/
tags/0.2.0/README
tags/0.2.0/build.xml
tags/0.2.0/src/util/perl/cleanupdata.pl
tags/0.2.0/src/util/perl/ligand-file2rdf.pl
tags/0.2.0/src/util/shell/kegg-wget.sh
tags/0.2.0/src/util/shell/ligand-file2rdf.sh
tags/0.2.0/src/util/shell/pdb-wget.sh
tags/0.2.0/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.2.0/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.2.0/src/war/WEB-INF/urlrewrite.xml
tags/0.2.0/src/war/atlas2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/go-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
tags/0.2.0/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
tags/0.2.0/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search-rdfdata.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search-v1.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search.jsp
tags/0.2.0/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-authority.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-service.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
tags/0.2.0/src/war/xsl-sources/pubmed.xsl
Removed Paths:
-------------
tags/0.2.0/build.xml
tags/0.2.0/src/util/perl/cleanupdata.pl
tags/0.2.0/src/war/README
tags/0.2.0/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.2.0/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.2.0/src/war/WEB-INF/urlrewrite.xml
tags/0.2.0/src/war/atlas2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/go-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
tags/0.2.0/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
tags/0.2.0/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search-rdfdata.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search-v1.jsp
tags/0.2.0/src/war/jsp-bio2rdf/search.jsp
tags/0.2.0/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-authority.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-service.jsp
tags/0.2.0/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
tags/0.2.0/src/war/xsl-sources/pubmed.xsl
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From: <p_a...@us...> - 2008-10-19 04:57:31
|
Revision: 130
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=130&view=rev
Author: p_ansell
Date: 2008-10-19 04:57:23 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
make build.xml copy the README into the distributed war file
Modified Paths:
--------------
trunk/build.xml
Removed Paths:
-------------
trunk/src/war/README
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From: <p_a...@us...> - 2008-10-19 04:54:14
|
Revision: 129
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=129&view=rev
Author: p_ansell
Date: 2008-10-19 04:54:11 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
update README
Modified Paths:
--------------
trunk/README
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From: <p_a...@us...> - 2008-10-19 04:52:51
|
Revision: 128
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=128&view=rev
Author: p_ansell
Date: 2008-10-19 04:52:48 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
delete branches, update version number and add README into the distributed source file at least
Modified Paths:
--------------
trunk/build.xml
Added Paths:
-----------
trunk/README
Removed Paths:
-------------
README
branches/
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From: <p_a...@us...> - 2008-10-19 02:13:34
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Revision: 127
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=127&view=rev
Author: p_ansell
Date: 2008-10-19 02:13:30 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
add experimental unfinished doi resolver
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
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From: <p_a...@us...> - 2008-10-16 03:58:11
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Revision: 126
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=126&view=rev
Author: p_ansell
Date: 2008-10-16 03:58:05 +0000 (Thu, 16 Oct 2008)
Log Message:
-----------
update headers and README
Modified Paths:
--------------
trunk/src/util/perl/cleanupdata.pl
trunk/src/war/README
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp
trunk/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/go-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
trunk/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/pdb-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp
trunk/src/war/jsp-bio2rdf/search-rdfdata.jsp
trunk/src/war/jsp-bio2rdf/search-v1.jsp
trunk/src/war/jsp-bio2rdf/search.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/wsdl-authority.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
trunk/src/war/xsl-sources/pubmed.xsl
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From: <p_a...@us...> - 2008-10-15 23:53:50
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Revision: 125
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=125&view=rev
Author: p_ansell
Date: 2008-10-15 23:53:45 +0000 (Wed, 15 Oct 2008)
Log Message:
-----------
add some new utils
Modified Paths:
--------------
trunk/src/util/perl/cleanupdata.pl
Added Paths:
-----------
trunk/src/util/perl/ligand-file2rdf.pl
trunk/src/util/shell/kegg-wget.sh
trunk/src/util/shell/ligand-file2rdf.sh
trunk/src/util/shell/pdb-wget.sh
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From: <p_a...@us...> - 2008-10-14 22:11:17
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Revision: 124
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=124&view=rev
Author: p_ansell
Date: 2008-10-14 22:11:11 +0000 (Tue, 14 Oct 2008)
Log Message:
-----------
add proteinlinks special query type to the list of available services
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/go-http2rdf.jsp
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From: <p_a...@us...> - 2008-10-13 01:27:21
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Revision: 123
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=123&view=rev
Author: p_ansell
Date: 2008-10-13 01:27:12 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
add tag for 0.2_rc2
Added Paths:
-----------
tags/0.2_rc2/
tags/0.2_rc2/build.xml
tags/0.2_rc2/src/war/WEB-INF/src/log4j.properties
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.2_rc2/src/war/WEB-INF/urlrewrite.xml
tags/0.2_rc2/src/war/atlas2rdf.jsp
tags/0.2_rc2/src/war/test-regexmethods.jsp
tags/0.2_rc2/src/war/xsl-sources/biopatml.xsl
tags/0.2_rc2/src/war/xsl-sources/cid.xsl
tags/0.2_rc2/src/war/xsl-sources/crystaleye.xsl
tags/0.2_rc2/src/war/xsl-sources/geneid.xsl~
tags/0.2_rc2/src/war/xsl-sources/gopubmed.xsl
tags/0.2_rc2/src/war/xsl-sources/kegg.xsl
tags/0.2_rc2/src/war/xsl-sources/pubchem.xsl
Removed Paths:
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tags/0.2_rc2/build.xml
tags/0.2_rc2/src/war/WEB-INF/src/log4j.properties
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.2_rc2/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.2_rc2/src/war/WEB-INF/urlrewrite.xml
tags/0.2_rc2/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-13 01:18:06
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Revision: 122
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=122&view=rev
Author: p_ansell
Date: 2008-10-13 01:18:02 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
fix small issues and set debug levels for production release
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-12 23:58:47
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Revision: 121
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=121&view=rev
Author: p_ansell
Date: 2008-10-12 23:58:42 +0000 (Sun, 12 Oct 2008)
Log Message:
-----------
add in CustomQuery methodology for basic generic custom query construction and usage
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/test-regexmethods.jsp
trunk/src/war/xsl-sources/biopatml.xsl
trunk/src/war/xsl-sources/cid.xsl
trunk/src/war/xsl-sources/crystaleye.xsl
trunk/src/war/xsl-sources/geneid.xsl~
trunk/src/war/xsl-sources/gopubmed.xsl
trunk/src/war/xsl-sources/kegg.xsl
trunk/src/war/xsl-sources/pubchem.xsl
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From: <p_a...@us...> - 2008-10-08 22:43:06
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Revision: 120
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=120&view=rev
Author: p_ansell
Date: 2008-10-08 22:43:04 +0000 (Wed, 08 Oct 2008)
Log Message:
-----------
add more html providers to bio2rdf.properties, and add in a sanity-check in atlas2rdf.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-03 00:59:11
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Revision: 119
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=119&view=rev
Author: p_ansell
Date: 2008-10-03 00:59:08 +0000 (Fri, 03 Oct 2008)
Log Message:
-----------
make the html redirection work a bit better
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-03 00:35:58
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Revision: 118
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=118&view=rev
Author: p_ansell
Date: 2008-10-03 00:35:56 +0000 (Fri, 03 Oct 2008)
Log Message:
-----------
add in more entries to the properties file
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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