bio2rdf-svncommits Mailing List for bio2rdf (Page 34)
Brought to you by:
fbelleau,
vincentemonet
Menu
▾
▴
bio2rdf-svncommits — Emails when a subversion commit is made to the repository
You can subscribe to this list here.
| 2008 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
(3) |
Aug
(12) |
Sep
(13) |
Oct
(45) |
Nov
(28) |
Dec
(14) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2009 |
Jan
|
Feb
(1) |
Mar
(53) |
Apr
(126) |
May
(123) |
Jun
(104) |
Jul
(44) |
Aug
(54) |
Sep
(46) |
Oct
(28) |
Nov
(38) |
Dec
(10) |
| 2010 |
Jan
(4) |
Feb
(13) |
Mar
(4) |
Apr
(20) |
May
(20) |
Jun
(9) |
Jul
(1) |
Aug
|
Sep
(3) |
Oct
|
Nov
(10) |
Dec
(17) |
| 2011 |
Jan
(4) |
Feb
(52) |
Mar
(3) |
Apr
|
May
|
Jun
|
Jul
(3) |
Aug
|
Sep
|
Oct
|
Nov
|
Dec
(1) |
| 2012 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
(6) |
Jul
|
Aug
(1) |
Sep
|
Oct
|
Nov
(1) |
Dec
|
|
From: <p_a...@us...> - 2008-11-23 06:34:48
|
Revision: 167
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=167&view=rev
Author: p_ansell
Date: 2008-11-23 06:34:46 +0000 (Sun, 23 Nov 2008)
Log Message:
-----------
comment out default endpoints in properties file which haven't been operating for a while
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-22 23:10:43
|
Revision: 166
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=166&view=rev
Author: p_ansell
Date: 2008-11-22 23:10:38 +0000 (Sat, 22 Nov 2008)
Log Message:
-----------
* add debug to dump raw list of provider URL's
* change license query rdf/xml to directly reference cc:license
* add commented list of providers into bio2rdf.properties which are not configured but are used in rdfiser scripts of going to be used soon
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/debug-configuration.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-19 05:04:08
|
Revision: 165
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=165&view=rev
Author: p_ansell
Date: 2008-11-19 05:04:01 +0000 (Wed, 19 Nov 2008)
Log Message:
-----------
bump revision, add countlinksns query and add changes to prosite-biopatml2rdf converter for standard predicates
Modified Paths:
--------------
trunk/build.xml
trunk/src/util/perl/prosite-biopatml2rdf.pl
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-18 06:45:58
|
Revision: 164
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=164&view=rev
Author: p_ansell
Date: 2008-11-18 06:45:54 +0000 (Tue, 18 Nov 2008)
Log Message:
-----------
add owl:sameAs to prosite-biopatml conversion script
Modified Paths:
--------------
trunk/src/util/perl/prosite-biopatml2rdf.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-18 05:07:41
|
Revision: 163
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=163&view=rev
Author: p_ansell
Date: 2008-11-18 05:07:34 +0000 (Tue, 18 Nov 2008)
Log Message:
-----------
update version number for 0.2.2 release
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-18 02:03:42
|
Revision: 162
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=162&view=rev
Author: p_ansell
Date: 2008-11-18 02:03:38 +0000 (Tue, 18 Nov 2008)
Log Message:
-----------
fix url encoding so that it always uses %20 for spaces instead of + so that everything is simple and consistent. needs to be consistent for sparql queries to work correctly as they are bit sensitive
Modified Paths:
--------------
trunk/src/util/perl/prosite-biopatml2rdf.pl
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-17 06:33:14
|
Revision: 161
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=161&view=rev
Author: p_ansell
Date: 2008-11-17 06:33:10 +0000 (Mon, 17 Nov 2008)
Log Message:
-----------
fix up searchns and add prosite biopatml2rdf converter
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
Added Paths:
-----------
trunk/src/util/perl/flybase-rdf2rdf.pl
trunk/src/util/perl/prosite-biopatml2rdf.pl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-14 06:27:43
|
Revision: 160
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=160&view=rev
Author: p_ansell
Date: 2008-11-14 06:27:41 +0000 (Fri, 14 Nov 2008)
Log Message:
-----------
fix links / linksns query definitions
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-14 03:47:02
|
Revision: 159
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=159&view=rev
Author: p_ansell
Date: 2008-11-14 03:46:52 +0000 (Fri, 14 Nov 2008)
Log Message:
-----------
add in more queries to bio2rdf.properties
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-14 00:48:17
|
Revision: 158
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=158&view=rev
Author: p_ansell
Date: 2008-11-14 00:48:07 +0000 (Fri, 14 Nov 2008)
Log Message:
-----------
fix up some search rdfisers and add some more query types to the properties file
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-11 10:06:36
|
Revision: 157
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=157&view=rev
Author: p_ansell
Date: 2008-11-11 10:06:33 +0000 (Tue, 11 Nov 2008)
Log Message:
-----------
add new pieces to support namespacecounts and other statistics based queries
Modified Paths:
--------------
trunk/src/util/perl/bio-tab2rdf.pl
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/demo.rdf
trunk/src/war/includes-css/bio2rdf.css
Added Paths:
-----------
trunk/src/war/biopax.owl
trunk/src/war/jsp-bio2rdf/namespacecounts.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-05 01:45:58
|
Revision: 156
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=156&view=rev
Author: p_ansell
Date: 2008-11-05 01:43:58 +0000 (Wed, 05 Nov 2008)
Log Message:
-----------
fix up style for qut web review for bio2rdf.mquter.qut.edu.au
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/urlrewrite.xml
Added Paths:
-----------
trunk/src/war/includes-css/
trunk/src/war/includes-css/bio2rdf.css
trunk/src/war/includes-css/qut-corpstyle.css
trunk/src/war/includes-images/MQUTeRlogo.png
trunk/src/war/includes-images/blank.gif
trunk/src/war/includes-images/nav_bar.gif
trunk/src/war/includes-images/realworld.gif
trunk/src/war/mquter-index.html
trunk/src/war/redirectToId.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-04 05:37:23
|
Revision: 155
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=155&view=rev
Author: p_ansell
Date: 2008-11-04 05:37:19 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
fine tune and add new configurations for some namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-04 02:13:00
|
Revision: 154
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=154&view=rev
Author: p_ansell
Date: 2008-11-04 02:12:58 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
minor tweaks
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-03 05:16:32
|
Revision: 153
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=153&view=rev
Author: p_ansell
Date: 2008-11-03 05:16:29 +0000 (Mon, 03 Nov 2008)
Log Message:
-----------
fix url encoding issues and add tagging provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-11-02 23:35:07
|
Revision: 152
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=152&view=rev
Author: p_ansell
Date: 2008-11-02 23:34:58 +0000 (Sun, 02 Nov 2008)
Log Message:
-----------
add debug page, and the rsync script for backing up the sourceforge svn repository
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
Added Paths:
-----------
trunk/src/util/shell/backupbio2rdfrsync.sh
trunk/src/war/debug-configuration.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-31 05:35:29
|
Revision: 151
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=151&view=rev
Author: p_ansell
Date: 2008-10-31 05:35:28 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
tag 0.2.1 release
Added Paths:
-----------
tags/0.2.1/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-31 05:34:25
|
Revision: 150
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=150&view=rev
Author: p_ansell
Date: 2008-10-31 05:34:16 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
make final changes before releasing 0.2.1
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/urlrewrite.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-31 03:05:36
|
Revision: 149
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=149&view=rev
Author: p_ansell
Date: 2008-10-31 03:05:28 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
move images directory so it won't accidentally conflict and fix urlrewrite and add kegg-Entry fix
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/index.html
Added Paths:
-----------
trunk/src/war/includes-images/
Removed Paths:
-------------
trunk/src/war/images/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-31 02:37:13
|
Revision: 148
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=148&view=rev
Author: p_ansell
Date: 2008-10-31 02:37:08 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
remove some things and fix urlrewrite
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
Removed Paths:
-------------
trunk/src/war/jsp-includes/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-31 02:25:43
|
Revision: 147
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=147&view=rev
Author: p_ansell
Date: 2008-10-31 02:25:38 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
get some more things working that weren't quite working before
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/web-production-template.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
trunk/src/war/robots.txt
trunk/src/war/sitemap.xml
Removed Paths:
-------------
trunk/src/war/WEB-INF/bin/configSesame.bat
trunk/src/war/WEB-INF/bin/configSesame.sh
trunk/src/war/WEB-INF/system.conf
trunk/src/war/WEB-INF/urlrewrite-v1.xml
trunk/src/war/WEB-INF/urlrewrite-v2.xml
trunk/src/war/WEB-INF/web.xml-2.2
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-30 05:06:49
|
Revision: 146
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=146&view=rev
Author: p_ansell
Date: 2008-10-30 05:06:27 +0000 (Thu, 30 Oct 2008)
Log Message:
-----------
more tuneups to get ready for 0.2.1, still does all queries at once
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-29 04:50:25
|
Revision: 145
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=145&view=rev
Author: p_ansell
Date: 2008-10-29 04:50:07 +0000 (Wed, 29 Oct 2008)
Log Message:
-----------
fix the html link to be a literal instead of a resource
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-29 04:15:04
|
Revision: 144
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=144&view=rev
Author: p_ansell
Date: 2008-10-29 04:14:55 +0000 (Wed, 29 Oct 2008)
Log Message:
-----------
almost complete the new architecture, left off default for construct until the number of successful results can be contained
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <p_a...@us...> - 2008-10-28 02:03:09
|
Revision: 143
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=143&view=rev
Author: p_ansell
Date: 2008-10-28 02:03:06 +0000 (Tue, 28 Oct 2008)
Log Message:
-----------
search working
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/demo.rdf
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
