bio2rdf-svncommits Mailing List for bio2rdf (Page 30)
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From: <p_a...@us...> - 2009-04-09 02:14:30
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Revision: 267
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=267&view=rev
Author: p_ansell
Date: 2009-04-09 02:14:28 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
add doi provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-09 02:12:40
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Revision: 266
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=266&view=rev
Author: p_ansell
Date: 2009-04-09 02:12:25 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
add new providers using information from http://www.geneontology.org/cgi-bin/xrefs.cgi
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-09 00:02:44
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Revision: 265
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=265&view=rev
Author: p_ansell
Date: 2009-04-09 00:02:35 +0000 (Thu, 09 Apr 2009)
Log Message:
-----------
fix rdf normalisation rules on providers which have been upgraded so far
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-07 02:04:34
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Revision: 264
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=264&view=rev
Author: p_ansell
Date: 2009-04-07 02:04:10 +0000 (Tue, 07 Apr 2009)
Log Message:
-----------
remove 0.2 branch
Removed Paths:
-------------
branches/0.2/
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From: <p_a...@us...> - 2009-04-06 22:22:21
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Revision: 263
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=263&view=rev
Author: p_ansell
Date: 2009-04-06 22:22:15 +0000 (Mon, 06 Apr 2009)
Log Message:
-----------
make blacklist expire explicitly on pages which rely on it and fix syntax bug on blacklisterror.jsp
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/blacklisterror.jsp
trunk/src/war/errorstats.jsp
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From: <p_a...@us...> - 2009-04-06 04:45:33
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Revision: 262
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=262&view=rev
Author: p_ansell
Date: 2009-04-06 04:45:32 +0000 (Mon, 06 Apr 2009)
Log Message:
-----------
cut down architecture diagram a little
Modified Paths:
--------------
trunk/docs/architecture.svg
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From: <p_a...@us...> - 2009-04-02 07:45:06
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Revision: 261
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=261&view=rev
Author: p_ansell
Date: 2009-04-02 07:44:57 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
tag 0.3.2 version
Added Paths:
-----------
tags/0.3.2/
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.3.2/src/war/WEB-INF/urlrewrite.xml
tags/0.3.2/src/war/atlas2rdf.jsp
tags/0.3.2/src/war/blacklisterror.jsp
tags/0.3.2/src/war/namespaceproviders.jsp
tags/0.3.2/src/war/robots.txt
Removed Paths:
-------------
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.3.2/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.3.2/src/war/WEB-INF/urlrewrite.xml
tags/0.3.2/src/war/atlas2rdf.jsp
tags/0.3.2/src/war/namespaceproviders.jsp
tags/0.3.2/src/war/robots.txt
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From: <p_a...@us...> - 2009-04-02 07:29:21
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Revision: 260
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=260&view=rev
Author: p_ansell
Date: 2009-04-02 07:29:15 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
fix namespace list with space before comma-separated list and add new provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/namespaceproviders.jsp
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From: <p_a...@us...> - 2009-04-02 06:47:11
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Revision: 259
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=259&view=rev
Author: p_ansell
Date: 2009-04-02 06:47:05 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
add ipi html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 06:34:29
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Revision: 258
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=258&view=rev
Author: p_ansell
Date: 2009-04-02 06:34:23 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
fix gi html provider entry
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 06:28:19
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Revision: 257
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=257&view=rev
Author: p_ansell
Date: 2009-04-02 06:28:18 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
add sgd html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 05:58:13
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Revision: 256
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=256&view=rev
Author: p_ansell
Date: 2009-04-02 05:58:11 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
put up the minimum number of queries that people are allowed to make before the blacklist sets in by default to reduce the likelihood of people going over accidentally with casual use during the default 12 minute window
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 05:52:21
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Revision: 255
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=255&view=rev
Author: p_ansell
Date: 2009-04-02 05:52:19 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
fix time until reset message on /error/blacklist
Modified Paths:
--------------
trunk/src/war/blacklisterror.jsp
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From: <p_a...@us...> - 2009-04-02 05:49:51
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Revision: 254
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=254&view=rev
Author: p_ansell
Date: 2009-04-02 05:49:45 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
add genedb_spombe html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 05:41:48
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Revision: 253
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=253&view=rev
Author: p_ansell
Date: 2009-04-02 05:41:47 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
add dictybase html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-02 05:30:14
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Revision: 252
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=252&view=rev
Author: p_ansell
Date: 2009-04-02 05:30:13 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
minor link addition for robots.txt
Modified Paths:
--------------
trunk/src/war/blacklisterror.jsp
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From: <p_a...@us...> - 2009-04-02 05:27:51
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Revision: 251
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=251&view=rev
Author: p_ansell
Date: 2009-04-02 05:27:50 +0000 (Thu, 02 Apr 2009)
Log Message:
-----------
add blacklisting for clients so that bots who ignore robots.txt will be restricted in the number of queries they can perform in a given period
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/namespaceproviders.jsp
trunk/src/war/robots.txt
Added Paths:
-----------
trunk/src/war/blacklisterror.jsp
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From: <p_a...@us...> - 2009-04-01 05:22:54
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Revision: 250
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=250&view=rev
Author: p_ansell
Date: 2009-04-01 05:22:50 +0000 (Wed, 01 Apr 2009)
Log Message:
-----------
cleanup
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
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From: <p_a...@us...> - 2009-04-01 05:11:20
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Revision: 249
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=249&view=rev
Author: p_ansell
Date: 2009-04-01 05:11:11 +0000 (Wed, 01 Apr 2009)
Log Message:
-----------
lsid conversion working!!
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
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From: <p_a...@us...> - 2009-04-01 02:55:42
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Revision: 248
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=248&view=rev
Author: p_ansell
Date: 2009-04-01 02:55:40 +0000 (Wed, 01 Apr 2009)
Log Message:
-----------
lsid broken again, but large changes still sufficient to be committable
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
trunk/src/war/test-regexmethods.jsp
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From: <p_a...@us...> - 2009-03-31 07:10:30
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Revision: 247
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=247&view=rev
Author: p_ansell
Date: 2009-03-31 07:10:28 +0000 (Tue, 31 Mar 2009)
Log Message:
-----------
lsid not working, but add more parameters to use in URL template replacements
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
trunk/src/war/jsp-bio2rdf/namespacecounts.jsp
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From: <p_a...@us...> - 2009-03-31 03:31:31
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Revision: 246
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=246&view=rev
Author: p_ansell
Date: 2009-03-31 03:31:27 +0000 (Tue, 31 Mar 2009)
Log Message:
-----------
update host name detection in lsid resolver
Modified Paths:
--------------
trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
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From: <p_a...@us...> - 2009-03-31 03:16:46
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Revision: 245
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=245&view=rev
Author: p_ansell
Date: 2009-03-31 03:16:41 +0000 (Tue, 31 Mar 2009)
Log Message:
-----------
minor fixes to lsid parts
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/wsdl-authority.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service.jsp
trunk/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp
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From: <p_a...@us...> - 2009-03-31 00:54:39
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Revision: 244
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=244&view=rev
Author: p_ansell
Date: 2009-03-31 00:54:37 +0000 (Tue, 31 Mar 2009)
Log Message:
-----------
bump version and add kegg2geneid to the mquter database list
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-03-30 08:35:26
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Revision: 243
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=243&view=rev
Author: p_ansell
Date: 2009-03-30 08:35:25 +0000 (Mon, 30 Mar 2009)
Log Message:
-----------
fix logging level on pipes jsp page
Modified Paths:
--------------
tags/0.3.1/src/war/bio2rdfpipes.jsp
trunk/src/war/bio2rdfpipes.jsp
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