bio2rdf-bugs Mailing List for bio2rdf (Page 8)
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From: SourceForge.net <no...@so...> - 2009-07-10 05:57:07
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Bugs item #2819402, was opened at 2009-07-10 15:57 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819402&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Configuration files Group: v0.6.2 Status: Open Resolution: None Priority: 7 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Take profiles out of /admin/configuration Initial Comment: Profiles shouldn't be distributed in the same manner as the other items, as they should always be overridable by users, which might not be the case if the profiles are downloaded together with the other items. Make up a /admin/profiles that is visible based on whether a bio2rdf.properties configuration setting is enabled, but will always be visible on public resolvers for debugging and exploration purposes. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2819402&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 08:12:59
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Feature Requests item #2813819, was opened at 2009-06-29 18:12 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813819&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Interface Improvements Group: None Status: Open Priority: 5 >Private: Yes Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Integrate OpenID to allow logged-in configuration changes Initial Comment: http://code.google.com/p/openid4java/source/browse/#svn/trunk/samples/simple-openid/src/main/webapp ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813819&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 08:12:40
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Feature Requests item #2813819, was opened at 2009-06-29 18:12 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813819&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Interface Improvements Group: None Status: Open Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Integrate OpenID to allow logged-in configuration changes Initial Comment: http://code.google.com/p/openid4java/source/browse/#svn/trunk/samples/simple-openid/src/main/webapp ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813819&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 07:14:25
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Feature Requests item #2813790, was opened at 2009-06-29 17:14 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813790&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Model changes Group: v0.6.2 Status: Open Priority: 5 Private: Yes Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Add author attribution to each of the elements Initial Comment: Add users OpenID as an attribution identifier to each of the model elements ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813790&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 06:47:20
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Feature Requests item #2813779, was opened at 2009-06-29 16:47 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813779&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Interface Improvements Group: Next Release (example) Status: Open Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Implement /admin/refreshconfiguration Initial Comment: * Need to have a simple URL which is able to trigger the update configuration method internally to supplement the automatic method that is already in use ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813779&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 06:36:26
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Bugs item #2813776, was opened at 2009-06-29 16:36 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813776&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Database maintenance Group: Non-package-related Status: Open Resolution: None Priority: 7 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Marc-Alexandre (lotusman) Summary: go.bio2rdf.org/sparql generates invalid XML Initial Comment: http://quebec.bio2rdf.org/go:0004396 demonstrates an example of the invalid XML currently being generated by the http://go.bio2rdf.org/sparql server. According to the Virtuoso maintainers, this is a configuration issue. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813776&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:46:30
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Bugs item #2811857, was opened at 2009-06-25 09:15 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811857&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Ontologies >Group: Non-package-related Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Michel Dumontier (micheldumontier) Summary: Build and confirm ontology for geneid namespace Initial Comment: Ensure all of the predicates on http://qut.bio2rdf.org/geneid:110208 are either resolvable, or at least represented in the http://qut.bio2rdf.org/ns/bio2rdf OWL file ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811857&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:46:10
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Bugs item #2811858, was opened at 2009-06-25 09:15 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811858&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Ontologies >Group: Non-package-related Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) >Assigned to: Michel Dumontier (micheldumontier) Summary: Build and confirm ontology for interpro namespace Initial Comment: Ensure all of the predicates on http://qut.bio2rdf.org/interpro:IPR008160 are either resolvable, or at least represented in the http://qut.bio2rdf.org/ns/bio2rdf OWL file ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811858&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:45:00
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Bugs item #2802092, was opened at 2009-06-06 08:53 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Rdfisers >Group: Non-package-related Status: Closed Resolution: Works For Me Priority: 5 Private: No Submitted By: michael grobe (dgrobe) >Assigned to: Peter Ansell (p_ansell) Summary: missing go entries Initial Comment: it appears to me that go:0005488 has no parents...but a lot of GO categories have 5488 as a parent...and my text version of GO has GO:0003674 (molecular_function) as a (actually, the only) is_a parent to 5488. it could be that some RDFizer misses 5488 cuz 3674 is more or less the root of the molecular function tree.... ...but then I'm a brand new user, so it's probably just me. FYI michael grobe ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-06 15:51 Message: It looks to me like the RDF triple "<http://bio2rdf.org/go:0005488> <http://bio2rdf.org/ns/go#is_a> <http://bio2rdf.org/go:0003674>" exists in the document you get from both http://qut.bio2rdf.org/go:0005488 and http://quebec.bio2rdf.org/go:0005488 There are two different servers that resolve information for http://bio2rdf.org/, but they both have that statement in this case. Apologies in advance for any confusion that is caused by the two servers having different software installed on them. I am doing my PhD in resolution of queries, and the other server administrators choose not to use my software because they see it as being too slow... If in doubt, you will get more information if you change http://bio2rdf.org/ to http://qut.bio2rdf.org/ Also, some of the databases are being restarted this weekend so there may be downtime for the next few days. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:44:21
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Bugs item #2802380, was opened at 2009-06-07 12:52 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802380&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Endpoints >Group: Non-package-related Status: Closed Resolution: Fixed Priority: 5 Private: No Submitted By: michael grobe (dgrobe) >Assigned to: Peter Ansell (p_ansell) Summary: go:0005488 still strange? Initial Comment: Ptter: Sorry i didn't better describe my problem; can't fix it if i can't show it's broken (or that it appears broken in this case). At quebec.bio2rdf.org/sparql, i do: select * where { <http://bio2rdf.org/go:0004003> <http://bio2rdf.org/bio2rdf#isA> $o } and get its 3 parent categories back, but if i do the same query on, say, go:0005488, i get nothing back. As i looked at this some more, it turned out that i lost the upward links for all three parents of go:0004003 after one or several successful links. but other stuff confuses me too. for example: if i do: select * where { <http://bio2rdf.org/go:0004003> $p $o } limit 1000 and examine the predicates, i see 3 #isA predicates, but if i look at 5488, i see no #isA predicates. I hope this is a little clearer, and thanks, Michael Grobe Indiana University ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-24 07:28 Message: closing because of no recent activity. comment if still necessary. ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-09 09:23 Message: The quebec.bio2rdf.org/sparql server is reasonably out of date. It hasn't been updated recently. If you want to query GO you would be better using the go.bio2rdf.org/sparql endpoint, or downloading the source file from http://quebec.bio2rdf.org/download/n3/go.n3.gz and putting it into your local rdf store. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802380&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:43:44
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Bugs item #2802673, was opened at 2009-06-08 09:49 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802673&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Database maintenance >Group: Non-package-related Status: Closed Resolution: None Priority: 5 Private: No Submitted By: michael grobe (dgrobe) >Assigned to: Peter Ansell (p_ansell) Summary: problem using n32virtuoso.pl Initial Comment: hello: i am trying to load the obo.n3 example using n32virtuoso.pl. i got the error about not having permissions to run DB.DBA.SPARQL_INSERT_DICT_CONTENT and so i tried to follow the directions in http://code.google.com/p/entitydescriber/wiki/installingvirtuoso to wit: In order to do update statements you'll need to go back to the command prompt and navigate to where isql is. It's in the bin directory of your Virtuoso-OpenSource installation ./bin/isql 1111 dba dba Where 1111 is the port that isql will use, dba is the user name and dba is the password This brings up an SQL prompt SQL> Enter SQL> GRANT SELECT ON DB.DBA.SPARQL_DELETE_DICT_CONTENT TO "SPARQL"; and enter SQL> GRANT SELECT ON DB.DBA.SPARQL_INSERT_DICT_CONTENT TO "SPARQL"; to gain permission on these procedures. Do the same for any other procedure you want. Now ify ou go back to the SPARQL Endpoint: http://localhost:8890/sparql, you will be able to do SPARUL statements like INSERT and DELETE. Now the login was successful, and i got the SQL> prompt, but the command: grant select on DB.DBA.SPARQL_INSERT_DICT_CONTENT TO "SPARQL"; got me: *** Error 42S02: [OpenLink][Virtuoso ODBC Driver][Virtuoso Server]SR136: Bad table name in GRANT / REVOKE DB.DBA.SPARQL_INSERT_DICT_CONTENT. at line 10 of Top-Level: grant select on DB.DBA.SPARQL_INSERT_DICT_CONTENT TO "SPARQL" not clear to whom this should be addressed but at least the Perl code was in the Bio2RDF pages. Thanks for whatever help you can give, and in the meantime i guess i'll try the bash install approach. Michael Grobe Indiana University P.S.: I'm using the freebie version of Virtuoso... ---------------------------------------------------------------------- Comment By: michael grobe (dgrobe) Date: 2009-06-08 11:27 Message: hey: sudden inspiration had me try "GRANT EXECUTE" in place of those "GRANT SELECT" commands, and sudden realization that my relative file names were composed using "/" rather than "\" (this IS a windows install after all), and my supposedly relative pathname started with a "/" (doooh), made my day much much better. in fact, the install appears to be proceeding even as we speak. so, other than a suggestion to someone that the docs get changed, i would like to close this problem, and go looking for the next one.... which i suppose will be something like, now that my data has been loaded, how do i find it?" regards, michael grobe ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802673&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:41:18
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Bugs item #2802686, was opened at 2009-06-08 10:43 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802686&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Endpoints >Group: Non-package-related Status: Closed Resolution: Duplicate Priority: 5 Private: No Submitted By: michael grobe (dgrobe) >Assigned to: Peter Ansell (p_ansell) Summary: go:0005488 still strange? Initial Comment: Ptter: Sorry i didn't better describe my problem; can't fix it if i can't show it's broken (or that it appears broken in this case). At quebec.bio2rdf.org/sparql, i do: select * where { <http://bio2rdf.org/go:0004003> <http://bio2rdf.org/bio2rdf#isA> $o } and get its 3 parent categories back, but if i do the same query on, say, go:0005488, i get nothing back. As i looked at this some more, it turned out that i lost the upward links for all three parents of go:0004003 after one or several successful links. but other stuff confuses me too. for example: if i do: select * where { <http://bio2rdf.org/go:0004003> $p $o } limit 1000 and examine the predicates, i see 3 #isA predicates, but if i look at 5488, i see no #isA predicates. I hope this is a little clearer, and thanks, Michael Grobe Indiana University ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-09 09:25 Message: close this as duplicate of 2802380 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802686&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:37:37
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Bugs item #2813761, was opened at 2009-06-29 15:29 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v0.6.0 Status: Closed Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Default providers being imported twice in some cases Initial Comment: When a namespace is assigned to a default provider, queries for that namespace will generate 2 redundant queries instead of one ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:30 Message: Fixed in 0.6.1 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:37:21
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Bugs item #2813762, was opened at 2009-06-29 15:31 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v0.6.0 Status: Closed Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: The namespace match method all is not interpreted correctly Initial Comment: Temporary fix, change all namespace match methods to any where both any and all have the same meaning ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:31 Message: Fixed in 0.6.1 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:37:06
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Bugs item #2813763, was opened at 2009-06-29 15:32 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v0.6.0 Status: Closed Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Static RDF/XML insertions not working Initial Comment: Static RDF/XML insertions are not currently being inserted at all. ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:33 Message: Fixed in 0.6.1. Was a regression from the change from title to URI that wasn't picked up before the 0.6.0 release. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:36:45
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Bugs item #2813764, was opened at 2009-06-29 15:36 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813764&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.0 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Rdf Rule orders not being imported Initial Comment: The rdf rule order predicate is not being imported from the RDF configuration resulting in all rules having order 100 by default and making queries that rely on multiple ordered rules failing in most cases ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:36 Message: Fixed in 0.6.1. There was a missing line in the RdfNormalisationRule.fromRdf method ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813764&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:36:03
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Bugs item #2813764, was opened at 2009-06-29 15:36 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813764&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.0 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Rdf Rule orders not being imported Initial Comment: The rdf rule order predicate is not being imported from the RDF configuration resulting in all rules having order 100 by default and making queries that rely on multiple ordered rules failing in most cases ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813764&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:33:57
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Bugs item #2813763, was opened at 2009-06-29 15:32 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application >Group: v0.6.1 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Static RDF/XML insertions not working Initial Comment: Static RDF/XML insertions are not currently being inserted at all. ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:33 Message: Fixed in 0.6.1. Was a regression from the change from title to URI that wasn't picked up before the 0.6.0 release. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:32:49
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Bugs item #2813763, was opened at 2009-06-29 15:32 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Static RDF/XML insertions not working Initial Comment: Static RDF/XML insertions are not currently being inserted at all. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813763&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:32:00
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Bugs item #2813762, was opened at 2009-06-29 15:31 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.1 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: The namespace match method all is not interpreted correctly Initial Comment: Temporary fix, change all namespace match methods to any where both any and all have the same meaning ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:31 Message: Fixed in 0.6.1 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:31:40
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Bugs item #2813762, was opened at 2009-06-29 15:31 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.1 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: The namespace match method all is not interpreted correctly Initial Comment: Temporary fix, change all namespace match methods to any where both any and all have the same meaning ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813762&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:30:15
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Bugs item #2813761, was opened at 2009-06-29 15:29 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.1 >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Default providers being imported twice in some cases Initial Comment: When a namespace is assigned to a default provider, queries for that namespace will generate 2 redundant queries instead of one ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2009-06-29 15:30 Message: Fixed in 0.6.1 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-29 05:29:46
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Bugs item #2813761, was opened at 2009-06-29 15:29 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Web application Group: v0.6.1 Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Peter Ansell (p_ansell) Summary: Default providers being imported twice in some cases Initial Comment: When a namespace is assigned to a default provider, queries for that namespace will generate 2 redundant queries instead of one ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2813761&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-28 03:38:04
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Feature Requests item #2813421, was opened at 2009-06-28 13:38 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813421&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Nobody/Anonymous (nobody) Summary: Check namespace/query/provider identifier validity Initial Comment: * Should check the validity of the ns:* and provider:* keys before redirecting, so that invalid ones can be detected, instead of just redirecting to the complete configuration ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814192&aid=2813421&group_id=142631 |
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From: SourceForge.net <no...@so...> - 2009-06-24 23:15:50
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Bugs item #2811858, was opened at 2009-06-25 09:15 Message generated for change (Tracker Item Submitted) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811858&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Peter Ansell (p_ansell) Assigned to: Nobody/Anonymous (nobody) Summary: Build and confirm ontology for interpro namespace Initial Comment: Ensure all of the predicates on http://qut.bio2rdf.org/interpro:IPR008160 are either resolvable, or at least represented in the http://qut.bio2rdf.org/ns/bio2rdf OWL file ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2811858&group_id=142631 |
