#545 Avogadro crashes on OSX

[Anonymous]

Avogadro started crashing 1-2 seconds after launch. The Interface goes unresponsive first.

Process: Avogadro [879]
Path: /Applications/Avogadro.app/Contents/MacOS/Avogadro
Identifier: net.sourceforge
Version: ??? (1.0.3)
Code Type: X86 (Native)
Parent Process: launchd [203]

Date/Time: 2011-08-12 10:48:09.649 +0200
OS Version: Mac OS X 10.7 (11A511)
Report Version: 9

Interval Since Last Report: 661994 sec
Crashes Since Last Report: 33
Per-App Interval Since Last Report: 359942 sec
Per-App Crashes Since Last Report: 13
Anonymous UUID: BB09986C-0E20-4852-AA35-A2E5AE741C3B

Crashed Thread: 11

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000

VM Regions Near 0:
--> PAGEZERO 0000000000000000-0000000000001000 [ 4K] ---/--- SM=NUL /Applications/Avogadro.app/Contents/MacOS/Avogadro
TEXT 0000000000001000-000000000008b000 [ 552K] r-x/rwx SM=COW /Applications/Avogadro.app/Contents/MacOS/Avogadro

Application Specific Information:
objc[879]: garbage collection is OFF

Thread 0:: Dispatch queue: com.apple.main-thread
0 QtGui 0x00668e11 QPen::QPen(QBrush const&, double, Qt::PenStyle, Qt::PenCapStyle, Qt::PenJoinStyle) + 1
1 QtGui 0x00631e26 QPainter::initFrom(QWidget const) + 134
2 QtGui 0x006357d1 QPainter::begin(QPaintDevice) + 801
3 QtGui 0x0091a5e0 QCheckBox::paintEvent(QPaintEvent) + 64
4 QtGui 0x0054cb83 QWidget::event(QEvent) + 3171
5 QtGui 0x00905313 QAbstractButton::event(QEvent) + 83
6 QtGui 0x0091a330 QCheckBox::event(QEvent) + 48
7 QtGui 0x004f3d7f QApplicationPrivate::notify_helper(QObject, QEvent) + 175
8 QtGui 0x004f3f81 QApplication::notify(QObject, QEvent) + 385
9 QtCore 0x01230cc2 QCoreApplication::notifyInternal(QObject, QEvent) + 98
10 QtGui 0x00493c66 QWidgetPrivate::qt_widget_event(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 3878
11 com.apple.HIToolbox 0x98d21e54 _InvokeEventHandlerUPP(OpaqueEventHandlerCallRef, OpaqueEventRef, void, long ()(OpaqueEventHandlerCallRef, OpaqueEventRef, void)) + 36
12 com.apple.HIToolbox 0x98b9d82b _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec + 1602
13 com.apple.HIToolbox 0x98b9cca8 _ZL30SendEventToEventTargetInternalP14OpaqueEventRefP20OpaqueEventTargetRefP14HandlerCallRec + 482
14 com.apple.HIToolbox 0x98b9cac0 SendEventToEventTargetWithOptions + 75
15 com.apple.HIToolbox 0x98bbd888 HIView::SendDraw(short, OpaqueGrafPtr, HIShape const, CGContext) + 478
16 com.apple.HIToolbox 0x98c4c42b HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 755
17 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 1509
18 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 1509
19 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 1509
20 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 1509
21 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext*, unsigned char, float) + 1509
22 com.apple.HIToolbox 0x98c4c71d HIView::RecursiveDrawComposited(HIShape const, HIShape const, unsigned long, HIView, CGContext, unsigned char, float) + 1509
23 com.apple.HIToolbox 0x98c4d6cf HIView::DrawComposited(short, OpaqueGrafPtr, HIShape const, unsigned long, HIView, CGContext) + 1227
24 com.apple.HIToolbox 0x98c4d817 HIView::Draw(short, OpaqueGrafPtr, unsigned long) + 81
25 com.apple.HIToolbox 0x98c4dbdf HIView::Render(unsigned long, CGContext) + 45
26 com.apple.HIToolbox 0x98bb9764 WindowData::BaseHandler(OpaqueEventHandlerCallRef, OpaqueEventRef, void) + 1280
27 com.apple.HIToolbox 0x98d21e54 _InvokeEventHandlerUPP(OpaqueEventHandlerCallRef, OpaqueEventRef, void, long ()(OpaqueEventHandlerCallRef, OpaqueEventRef, void)) + 36
28 com.apple.HIToolbox 0x98b9d82b _ZL23DispatchEventToHandlersP14EventTargetRecP14OpaqueEventRefP14HandlerCallRec + 1602
29 com.apple.HIToolbox 0x98b9cca8 _ZL30SendEventToEventTargetInternalP14OpaqueEventRefP20OpaqueEventTargetRefP14HandlerCallRec + 482
30 com.apple.HIToolbox 0x98bb1ac9 SendEventToEventTarget + 76
31 com.apple.HIToolbox 0x98e6ecae _ZL9SendEventmP10WindowDataP15OpaqueRgnHandle + 202
32 com.apple.HIToolbox 0x98bbc590 PaintWindow(WindowData, OpaqueRgnHandle, PaintReason, bool) + 145
33 com.apple.HIToolbox 0x98bbc40a EndWindowReshape(WindowData, ReshapeWindowInfo, unsigned char) + 60
34 com.apple.HIToolbox 0x98e72b13 WindowData::ReshapeAndPaint() + 121
35 com.apple.HIToolbox 0x98e72b46 ReshapeCustomWindow + 29
36 QtGui 0x004942c6 QWidgetPrivate::qt_mac_update_sizer(QWidget, int) + 342
37 QtGui 0x009b0385 QSizeGrip::showEvent(QShowEvent) + 37
38 QtGui 0x0054cb2f QWidget::event(QEvent) + 3087
39 QtGui 0x009b0038 QSizeGrip::event(QEvent) + 24
40 QtGui 0x004f3d7f QApplicationPrivate::notify_helper(QObject, QEvent) + 175
41 QtGui 0x004f3f81 QApplication::notify(QObject, QEvent) + 385
42 QtCore 0x01230cc2 QCoreApplication::notifyInternal(QObject, QEvent) + 98
43 QtGui 0x0054ffaf QWidgetPrivate::show_helper() + 271
44 QtGui 0x00550663 QWidget::setVisible(bool) + 1139
45 QtGui 0x009b0c60 QSizeGrip::qt_metacall(QMetaObject::Call, int, void) + 256
46 QtCore 0x01318e51 QMetaMethod::invoke(QObject, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const + 1681
47 QtCore 0x0131aaf2 QMetaObject::invokeMethod(QObject, char const, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) + 1074
48 QtGui 0x009bc14c QStatusBar::showEvent(QShowEvent) + 444
49 QtGui 0x0054cb2f QWidget::event(QEvent) + 3087
50 QtGui 0x009bbb82 QStatusBar::event(QEvent) + 242
51 QtGui 0x004f3d7f QApplicationPrivate::notify_helper(QObject, QEvent) + 175
52 QtGui 0x004f3f81 QApplication::notify(QObject, QEvent) + 385
53 QtCore 0x01230cc2 QCoreApplication::notifyInternal(QObject, QEvent) + 98
54 QtGui 0x0054ffaf QWidgetPrivate::show_helper() + 271
55 QtGui 0x00550663 QWidget::setVisible(bool) + 1139
56 QtGui 0x005421ca QWidgetPrivate::_q_showIfNotHidden() + 58
57 QtGui 0x00551b9f QWidget::qt_metacall(QMetaObject::Call, int, void) + 975
58 QtGui 0x00c10c55 QStatusBar::qt_metacall(QMetaObject::Call, int, void) + 53
59 QtCore 0x0132061a QMetaCallEvent::placeMetaCall(QObject) + 42
60 QtCore 0x01321c0e QObject::event(QEvent) + 542
61 QtGui 0x0054bfb1 QWidget::event(QEvent) + 145
62 QtGui 0x009bbb82 QStatusBar::event(QEvent) + 242
63 QtGui 0x004f3d7f QApplicationPrivate::notify_helper(QObject, QEvent) + 175
64 QtGui 0x004f3f81 QApplication::notify(QObject, QEvent) + 385
65 QtCore 0x01230cc2 QCoreApplication::notifyInternal(QObject, QEvent) + 98
66 QtCore 0x01315239 QCoreApplicationPrivate::sendPostedEvents(QObject, int, QThreadData) + 697
67 QtGui 0x0049b481 QEventDispatcherMacPrivate::postedEventsSourcePerformCallback(void) + 81
68 com.apple.CoreFoundation 0x9184810f CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 15
69 com.apple.CoreFoundation 0x91847ac6 CFRunLoopDoSources0 + 246
70 com.apple.CoreFoundation 0x918719d8 CFRunLoopRun + 1112
71 com.apple.CoreFoundation 0x918711ec CFRunLoopRunSpecific + 332
72 com.apple.CoreFoundation 0x91871098 CFRunLoopRunInMode + 120
73 com.apple.HIToolbox 0x98b97487 RunCurrentEventLoopInMode + 318
74 com.apple.HIToolbox 0x98b9ecee ReceiveNextEventCommon + 168
75 com.apple.HIToolbox 0x98d34a3c ReceiveNextEventInMode + 67
76 com.apple.HIToolbox 0x98d34ad4 ReceiveNextEvent + 72
77 QtGui 0x0049cb1c QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 316
78 QtCore 0x01312f31 QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 65
79 QtCore 0x0131316d QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 189
80 QtCore 0x0131549e QCoreApplication::exec() + 174
81 net.sourceforge 0x00013c43 main + 6451
82 net.sourceforge 0x00006e96 _start + 216
83 net.sourceforge 0x00006dbd start + 41

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x9538e90a kevent + 10
1 libdispatch.dylib 0x9676dccc _dispatch_mgr_invoke + 969
2 libdispatch.dylib 0x9676c71b _dispatch_mgr_thread + 53

Thread 2:
0 libsystem_kernel.dylib 0x9538e02e __workq_kernreturn + 10
1 libsystem_c.dylib 0x93650ccf _pthread_wqthread + 773
2 libsystem_c.dylib 0x936526fe start_wqthread + 30

Thread 3:
0 libsystem_kernel.dylib 0x9538e02e __workq_kernreturn + 10
1 libsystem_c.dylib 0x93650ccf _pthread_wqthread + 773
2 libsystem_c.dylib 0x936526fe start_wqthread + 30

Thread 4:
0 libsystem_kernel.dylib 0x9538e02e __workq_kernreturn + 10
1 libsystem_c.dylib 0x93650ccf _pthread_wqthread + 773
2 libsystem_c.dylib 0x936526fe start_wqthread + 30

Thread 5:
0 libsystem_kernel.dylib 0x9538d83e __psynch_cvwait + 10
1 libsystem_c.dylib 0x93652e78 _pthread_cond_wait + 914
2 libsystem_c.dylib 0x935fa82a pthread_cond_wait + 48
3 QtCore 0x011ee316 QWaitCondition::wait(QMutex, unsigned long) + 278
4 QtGui 0x00a5c84c QFileInfoGatherer::run() + 540
5 QtCore 0x01253f06 QThreadPrivate::start(void) + 198
6 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
7 libsystem_c.dylib 0x936526de thread_start + 34

Thread 6:
0 libsystem_kernel.dylib 0x9538e90a kevent + 10
1 QtCore 0x012ffdda QKqueueFileSystemWatcherEngine::run() + 74
2 QtCore 0x01253f06 QThreadPrivate::start(void*) + 198
3 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
4 libsystem_c.dylib 0x936526de thread_start + 34

Thread 7:
0 libsystem_kernel.dylib 0x9538d83e __psynch_cvwait + 10
1 libsystem_c.dylib 0x93652e78 _pthread_cond_wait + 914
2 libsystem_c.dylib 0x935fa7f5 pthread_cond_timedwait + 47
3 QtCore 0x011ee2f4 QWaitCondition::wait(QMutex, unsigned long) + 244
4 QtCore 0x01250574 QThreadPoolThread::run() + 500
5 QtCore 0x01253f06 QThreadPrivate::start(void) + 198
6 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
7 libsystem_c.dylib 0x936526de thread_start + 34

Thread 8:: com.apple.CFSocket.private
0 libsystem_kernel.dylib 0x9538db42 select + 10
1 com.apple.CoreFoundation 0x918bf9e5 CFSocketManager + 1557
2 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
3 libsystem_c.dylib 0x936526de thread_start + 34

Thread 9:
0 libsystem_kernel.dylib 0x9538ed4e read + 10
1 libstdc++.6.dylib 0x909e4f14 std::basic_file<char>::xsgetn(char, int) + 44
2 libstdc++.6.dylib 0x909b2391 std::basic_filebuf<char, std::char_traits<char=""> >::underflow() + 179
3 libstdc++.6.dylib 0x909bc3ad std::istream::getline(char, int, char) + 93
4 libstdc++.6.dylib 0x909bc21a std::istream::getline(char, int) + 62
5 libopenbabel.4.0.0.dylib 0x0011ffb5 OpenBabel::OBGlobalDataBase::Init() + 291
6 libopenbabel.4.0.0.dylib 0x001d539d OpenBabel::OBAromaticTyper::AssignAromaticFlags(OpenBabel::OBMol&) + 35
7 libopenbabel.4.0.0.dylib 0x000f8ae2 OpenBabel::OBBond::IsAromatic() const + 54
8 libopenbabel.4.0.0.dylib 0x001a8379 OpenBabel::OBSmartsMatcher::EvalBondExpr(OpenBabel::_BondExpr, OpenBabel::OBBond) + 197
9 libopenbabel.4.0.0.dylib 0x001a8443 OpenBabel::OBSmartsMatcher::EvalBondExpr(OpenBabel::_BondExpr, OpenBabel::OBBond) + 399
10 libopenbabel.4.0.0.dylib 0x001a9c94 OpenBabel::OBSSMatch::Match(std::vector<std::vector<int, std::allocator<int=""> >, std::allocator<std::vector<int, std::allocator<int=""> > > >&, int) + 562
11 libopenbabel.4.0.0.dylib 0x001a9b0e OpenBabel::OBSSMatch::Match(std::vector<std::vector<int, std::allocator<int=""> >, std::allocator<std::vector<int, std::allocator<int=""> > > >&, int) + 172
12 libopenbabel.4.0.0.dylib 0x001aa35a OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&, OpenBabel::Pattern const, std::vector<std::vector<int, std::allocator<int=""> >, std::allocator<std::vector<int, std::allocator<int=""> > > >&, bool) + 152
13 libopenbabel.4.0.0.dylib 0x001ab34d OpenBabel::OBSmartsPattern::Match(OpenBabel::OBMol&, bool) + 241
14 libopenbabel.4.0.0.dylib 0x000fa30c OpenBabel::OBBondTyper::AssignFunctionalGroupBonds(OpenBabel::OBMol&) + 242
15 libopenbabel.4.0.0.dylib 0x0018840b OpenBabel::OBMol::PerceiveBondOrders() + 3035
16 xyzformat.so 0x14f17db0 OpenBabel::XYZFormat::ReadMolecule(OpenBabel::OBBase, OpenBabel::OBConversion) + 4264
17 libopenbabel.4.0.0.dylib 0x00195bd9 OpenBabel::OBConversion::Read(OpenBabel::OBBase, std::istream) + 323
18 libavogadro.1.0.3.dylib 0x0150d922 Avogadro::ReadFileThread::run() + 1850
19 QtCore 0x01253f06 QThreadPrivate::start(void*) + 198
20 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
21 libsystem_c.dylib 0x936526de thread_start + 34

Thread 10:
0 libsystem_kernel.dylib 0x9538ed4e read + 10
1 libstdc++.6.dylib 0x909e4f14 std::basic_file<char>::xsgetn(char, int) + 44
2 libstdc++.6.dylib 0x909b2391 std::basic_filebuf<char, std::char_traits<char=""> >::underflow() + 179
3 libstdc++.6.dylib 0x909bc3ad std::istream::getline(char, int, char) + 93
4 libstdc++.6.dylib 0x909bc21a std::istream::getline(char, int) + 62
5 libopenbabel.4.0.0.dylib 0x0011ffb5 OpenBabel::OBGlobalDataBase::Init() + 291
6 libopenbabel.4.0.0.dylib 0x00120f27 OpenBabel::OBTypeTable::GetFromType() + 25
7 libopenbabel.4.0.0.dylib 0x000f0c9b OpenBabel::OBAtom::GetType() + 95
8 libopenbabel.4.0.0.dylib 0x001d4549 OpenBabel::OBAtomTyper::AssignTypes(OpenBabel::OBMol&) + 569
9 libopenbabel.4.0.0.dylib 0x000f0c73 OpenBabel::OBAtom::GetType() + 55
10 libopenbabel.4.0.0.dylib 0x000f0e19 OpenBabel::OBAtom::Duplicate(OpenBabel::OBAtom) + 73
11 libopenbabel.4.0.0.dylib 0x000f0f15 OpenBabel::OBAtom::operator=(OpenBabel::OBAtom&) + 35
12 libopenbabel.4.0.0.dylib 0x0018a20e OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&) + 64
13 libopenbabel.4.0.0.dylib 0x0018aeb5 OpenBabel::OBMol::operator=(OpenBabel::OBMol const&) + 187
14 libavogadro.1.0.3.dylib 0x0150d7ea Avogadro::ReadFileThread::run() + 1538
15 QtCore 0x01253f06 QThreadPrivate::start(void*) + 198
16 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
17 libsystem_c.dylib 0x936526de thread_start + 34

Thread 11 Crashed:
0 libstdc++.6.dylib 0x909d2c23 std::basic_string<char, std::char_traits<char="">, std::allocator<char> >::basic_string(std::string const&) + 57
1 libopenbabel.4.0.0.dylib 0x00120f68 OpenBabel::OBTypeTable::GetFromType() + 90
2 libopenbabel.4.0.0.dylib 0x000f0c9b OpenBabel::OBAtom::GetType() + 95
3 libopenbabel.4.0.0.dylib 0x001d4597 OpenBabel::OBAtomTyper::AssignTypes(OpenBabel::OBMol&) + 647
4 libopenbabel.4.0.0.dylib 0x000f0c73 OpenBabel::OBAtom::GetType() + 55
5 libopenbabel.4.0.0.dylib 0x000f0e19 OpenBabel::OBAtom::Duplicate(OpenBabel::OBAtom) + 73
6 libopenbabel.4.0.0.dylib 0x000f0f15 OpenBabel::OBAtom::operator=(OpenBabel::OBAtom&) + 35
7 libopenbabel.4.0.0.dylib 0x0018a20e OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&) + 64
8 libopenbabel.4.0.0.dylib 0x0018aeb5 OpenBabel::OBMol::operator=(OpenBabel::OBMol const&) + 187
9 libavogadro.1.0.3.dylib 0x0150d7ea Avogadro::ReadFileThread::run() + 1538
10 QtCore 0x01253f06 QThreadPrivate::start(void) + 198
11 libsystem_c.dylib 0x9364eed9 _pthread_start + 335
12 libsystem_c.dylib 0x936526de thread_start + 34

Thread 11 crashed with X86 Thread State (32-bit):
eax: 0xb05234ec ebx: 0xb0523488 ecx: 0xb0523478 edx: 0x00000000
edi: 0xb0523480 esi: 0x00000000 ebp: 0xb0523498 esp: 0xb0523460
ss: 0x00000023 efl: 0x00010286 eip: 0x909d2c23 cs: 0x0000001b
ds: 0x00000023 es: 0x00000023 fs: 0x00000023 gs: 0x0000000f
cr2: 0x00000000
Logical CPU: 3

Binary Images:
0x1000 - 0x8afe3 +net.sourceforge (??? - 1.0.3) <EFBBCF7E-E86F-D843-3801-0D0527466427> /Applications/Avogadro.app/Contents/MacOS/Avogadro
0xdb000 - 0x27dff7 +libopenbabel.4.0.0.dylib (4.0.0 - compatibility 4.0.0) <CA6DE740-831F-2C5C-CB92-37793DFAC7B3> /Applications/Avogadro.app/Contents/lib/libopenbabel.4.0.0.dylib
0x369000 - 0x422ff7 +QtOpenGL (4.7.1 - compatibility 4.7.0) <A55B5C39-3F0F-4082-49BF-5EC67CDFBFE8> /Applications/Avogadro.app/Contents/Frameworks/QtOpenGL.framework/Versions/4/QtOpenGL
0x466000 - 0xd9eff7 +QtGui (4.7.1 - compatibility 4.7.0) <81382E59-1147-5F65-7E54-BE36824D49A6> /Applications/Avogadro.app/Contents/Frameworks/QtGui.framework/Versions/4/QtGui
0x1092000 - 0x117ffe7 +QtNetwork (4.7.1 - compatibility 4.7.0) <968AEE79-F97E-C572-1839-E743383181D1> /Applications/Avogadro.app/Contents/Frameworks/QtNetwork.framework/Versions/4/QtNetwork
0x11e5000 - 0x1417fef +QtCore (4.7.1 - compatibility 4.7.0) <64323E9F-8EB6-6D90-7755-84629467EF22> /Applications/Avogadro.app/Contents/Frameworks/QtCore.framework/Versions/4/QtCore
0x14be000 - 0x156ffff +libavogadro.1.0.3.dylib (1.0.3 - compatibility 1.0.0) <BB5BE0C6-10B0-8831-1673-665E83197D1C> /Applications/Avogadro.app/Contents/lib/libavogadro.1.0.3.dylib
0x2760000 - 0x2766ff7 +libqgif.dylib (??? - ???) <4EBDE44C-F8E9-D3EC-2E2C-D0824442E003> /Applications/Avogadro.app/Contents/plugins/imageformats/libqgif.dylib
0x276b000 - 0x2771ff7 +libqico.dylib (??? - ???) <072A1FE3-2266-E4A6-1202-D4E3688FA617> /Applications/Avogadro.app/Contents/plugins/imageformats/libqico.dylib
0x27d6000 - 0x27dbffb +atomindexcolor.so (??? - ???) <02E378CF-5856-35F8-09D3-F2F5D735DED0> /Applications/Avogadro.app/Contents/lib/avogadro/colors/atomindexcolor.so
0x27e0000 - 0x27e5fe7 +chargecolor.so (??? - ???) <BD605DBF-AF34-5867-7CE6-F35549B46BB3> /Applications/Avogadro.app/Contents/lib/avogadro/colors/chargecolor.so
0x27f2000 - 0x27f7fff +customcolor.so (??? - ???) <DEDDCC16-383F-39D2-BB4D-8C18D836857E> /Applications/Avogadro.app/Contents/lib/avogadro/colors/customcolor.so
0x78af000 - 0x78c1fff libTraditionalChineseConverter.dylib (54.0.0 - compatibility 1.0.0) <ADEB72F9-0048-3C87-AD9B-71AA57D523E9> /System/Library/CoreServices/Encodings/libTraditionalChineseConverter.dylib
0x78c5000 - 0x78d3ffb libSimplifiedChineseConverter.dylib (54.0.0 - compatibility 1.0.0) <D3F1CC34-55EB-3D33-A7C2-025D5C8025D0> /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x7c37000 - 0x7c3cfef +distancecolor.so (??? - ???) <BF221CB3-84DE-998E-3567-6DC3E92B2291> /Applications/Avogadro.app/Contents/lib/avogadro/colors/distancecolor.so
0x7c42000 - 0x7c49fe3 +residuecolor.so (??? - ???) <E13D2541-42B3-4420-5DD8-ACE0F8B18C8B> /Applications/Avogadro.app/Contents/lib/avogadro/colors/residuecolor.so
0x7c50000 - 0x7c55ff3 +axesengine.so (??? - ???) <A9CC8102-B312-3814-C32A-D7128BB6F321> /Applications/Avogadro.app/Contents/lib/avogadro/engines/axesengine.so
0x7c5b000 - 0x7c60fe3 +overlayengine.so (??? - ???) <EC179658-0952-8D57-97B5-7CE38C0A4FD6> /Applications/Avogadro.app/Contents/lib/avogadro/engines/overlayengine.so
0x133be000 - 0x133f5ff7 +libqjpeg.dylib (??? - ???) <B3D8E126-F32A-FDED-FB84-3B8B381A2F6D> /Applications/Avogadro.app/Contents/plugins/imageformats/libqjpeg.dylib
0x133fe000 - 0x13417fff +cartoonengine.so (??? - ???) <A6EBC563-9DC5-A965-F42E-1072693C2D0B> /Applications/Avogadro.app/Contents/lib/avogadro/engines/cartoonengine.so
0x1342f000 - 0x13437fff +dipoleengine.so (??? - ???) <9AC7E427-4CF6-418C-1ABE-ACD4033F42EC> /Applications/Avogadro.app/Contents/lib/avogadro/engines/dipoleengine.so
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0x143f7000 - 0x143fffff +molecularpropextension.so (??? - ???) <C1580022-C03C-1EC3-7E1D-7EF995F6E382> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/molecularpropextension.so
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0x144b7000 - 0x144c2fe3 +supercellextension.so (??? - ???) <CDA8FF10-38BE-16DE-1B64-2BA0615CD452> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/supercellextension.so
0x144cd000 - 0x1450fff3 +surfaceextension.so (??? - ???) <6B4445DE-2E92-F97F-5387-FCBB2FDC0BA8> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/surfaceextension.so
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0x1455f000 - 0x1456eff7 +vibrationextension.so (??? - ???) <080257D5-3393-AFEE-A11A-FA2D99DC2113> /Applications/Avogadro.app/Contents/lib/avogadro/extensions/vibrationextension.so
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0x14595000 - 0x145a2fe7 +autoopttool.so (??? - ???) <AB4EAAD1-C1CB-69E6-00B9-D0B6EE2B81C3> /Applications/Avogadro.app/Contents/lib/avogadro/tools/autoopttool.so
0x145ae000 - 0x145b5ffb +autorotatetool.so (??? - ???) <9998496E-8A89-FEF8-AC10-45287F9D452F> /Applications/Avogadro.app/Contents/lib/avogadro/tools/autorotatetool.so
0x145bc000 - 0x145d7ff7 +bondcentrictool.so (??? - ???) <AB222668-672D-0DAC-7CEA-F9FC472C1495> /Applications/Avogadro.app/Contents/lib/avogadro/tools/bondcentrictool.so
0x145f4000 - 0x14600feb +clickmeasuretool.so (??? - ???) <EBAEAE6D-2801-939E-7260-C7A7FB12258E> /Applications/Avogadro.app/Contents/lib/avogadro/tools/clickmeasuretool.so
0x1460a000 - 0x1461bfeb +drawtool.so (??? - ???) <1605FB88-9749-DE20-16DB-D86DCD9E4D93> /Applications/Avogadro.app/Contents/lib/avogadro/tools/drawtool.so
0x14628000 - 0x1463efe3 +manipulatetool.so (??? - ???) <AAE9B45E-17DF-B33E-4514-57D6CC68524A> /Applications/Avogadro.app/Contents/lib/avogadro/tools/manipulatetool.so
0x14655000 - 0x14665ff3 +navigatetool.so (??? - ???) <04AE6298-C27C-7B3E-7145-1F3BF84456DE> /Applications/Avogadro.app/Contents/lib/avogadro/tools/navigatetool.so
0x14673000 - 0x1467cfff +selectrotatetool.so (??? - ???) <D84FE370-FAFE-01DE-C4D6-59FF3516BB1D> /Applications/Avogadro.app/Contents/lib/avogadro/tools/selectrotatetool.so
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0x14787000 - 0x1478dff3 +alchemyformat.so (??? - ???) <257D91A1-3921-E2C4-0EFB-909DDDBFEC5A> /Applications/Avogadro.app/Contents/lib/openbabel/alchemyformat.so
0x14793000 - 0x14799ff7 +amberformat.so (??? - ???) <3CFDA453-A047-7837-F2D5-F509299CD237> /Applications/Avogadro.app/Contents/lib/openbabel/amberformat.so
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0x147b4000 - 0x147bbfff +bgfformat.so (??? - ???) <9B9230E0-72AE-32A3-653C-1350221D9CBD> /Applications/Avogadro.app/Contents/lib/openbabel/bgfformat.so
0x147c2000 - 0x147c8ff7 +boxformat.so (??? - ???) <9F9115B9-6C13-5FC4-A41E-C4EFFFAB0AA0> /Applications/Avogadro.app/Contents/lib/openbabel/boxformat.so
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0x147dc000 - 0x147e1ff7 +cacheformat.so (??? - ???) <D1727770-86FE-F214-64B5-F39C812B4BD2> /Applications/Avogadro.app/Contents/lib/openbabel/cacheformat.so
0x147e6000 - 0x147ecfff +carformat.so (??? - ???) <1B1CBF62-C876-A6B5-40F5-CC3FD4E5D0FC> /Applications/Avogadro.app/Contents/lib/openbabel/carformat.so
0x147f2000 - 0x147f9ff7 +castepformat.so (??? - ???) <6BBD2333-B248-28C5-F3C4-91BF7AD9DC64> /Applications/Avogadro.app/Contents/lib/openbabel/castepformat.so
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0x1483d000 - 0x14842fff +chemdrawct.so (??? - ???) <EBB3B6AD-8C64-25EC-F06E-163FE306BB3A> /Applications/Avogadro.app/Contents/lib/openbabel/chemdrawct.so
0x14848000 - 0x14858ff3 +chemkinformat.so (??? - ???) <008321DE-DA59-CD9B-5B26-355FC2BD75F8> /Applications/Avogadro.app/Contents/lib/openbabel/chemkinformat.so
0x14866000 - 0x1486bfff +chemtoolformat.so (??? - ???) <99ADEDFC-1A33-E7E4-9236-F96D0CB7A7BC> /Applications/Avogadro.app/Contents/lib/openbabel/chemtoolformat.so
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0x1489d000 - 0x148bdff7 +cmlformat.so (??? - ???) <D737AF8F-04A9-88E5-2C5A-1F14DE7E04A1> /Applications/Avogadro.app/Contents/lib/openbabel/cmlformat.so
0x148d5000 - 0x148e5ff3 +cmlreactformat.so (??? - ???) <B12C9C20-D707-4F76-888C-629E250798F2> /Applications/Avogadro.app/Contents/lib/openbabel/cmlreactformat.so
0x148f3000 - 0x148f7fff +copyformat.so (??? - ???) <52FDCBD2-362C-CA29-C7E0-F82D496FB321> /Applications/Avogadro.app/Contents/lib/openbabel/copyformat.so
0x148fc000 - 0x14903ff3 +crkformat.so (??? - ???) <DAE2B906-BA62-6271-8970-D3AB02458C09> /Applications/Avogadro.app/Contents/lib/openbabel/crkformat.so
0x14909000 - 0x1490efff +CSRformat.so (??? - ???) <37B89BFB-7F20-E353-25F1-75E8C21213C6> /Applications/Avogadro.app/Contents/lib/openbabel/CSRformat.so
0x14913000 - 0x14918ff7 +cssrformat.so (??? - ???) <B4B088DE-60F9-881A-4460-A121AFF21C37> /Applications/Avogadro.app/Contents/lib/openbabel/cssrformat.so
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0x14942000 - 0x14948fff +dmolformat.so (??? - ???) <BB719DF8-AF4B-6806-1AD9-E89530743AEE> /Applications/Avogadro.app/Contents/lib/openbabel/dmolformat.so
0x1494e000 - 0x14955ff3 +fastaformat.so (??? - ???) <CBE2FE25-60A3-6738-E9EF-624B1AB79181> /Applications/Avogadro.app/Contents/lib/openbabel/fastaformat.so
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0x149b8000 - 0x149bdff3 +fhformat.so (??? - ???) <CE7CCB39-5BC8-5CE8-ECFE-5172189CBD1E> /Applications/Avogadro.app/Contents/lib/openbabel/fhformat.so
0x149c3000 - 0x149c9ffb +fhiaimsformat.so (??? - ???) <DAD890EA-25C6-0E6F-A2B4-1E2C696EEEAE> /Applications/Avogadro.app/Contents/lib/openbabel/fhiaimsformat.so
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0x14a4a000 - 0x14a5affb +gaussformat.so (??? - ???) <C765A033-40F4-1179-A505-58700A7A220C> /Applications/Avogadro.app/Contents/lib/openbabel/gaussformat.so
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0x14a76000 - 0x14a7cfff +ghemicalformat.so (??? - ???) <C7DD0B47-249B-52EB-975F-0F83A9B674DB> /Applications/Avogadro.app/Contents/lib/openbabel/ghemicalformat.so
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0x14a8c000 - 0x14a94ff7 +gulpformat.so (??? - ???) <B88B14AF-37E7-BD77-CE37-33EE43A5C380> /Applications/Avogadro.app/Contents/lib/openbabel/gulpformat.so
0x14a9b000 - 0x14aa1ffb +hinformat.so (??? - ???) <14BECDC7-BAF4-54FE-FCE7-CA8A6995A98B> /Applications/Avogadro.app/Contents/lib/openbabel/hinformat.so
0x14aa7000 - 0x14ab7fff +inchiformat.so (??? - ???) <7510D393-C08B-B107-F16C-C3F04AF99D86> /Applications/Avogadro.app/Contents/lib/openbabel/inchiformat.so
0x14ac5000 - 0x14acbffb +jaguarformat.so (??? - ???) <6B1EAA28-7A4D-E2E3-0DEC-749FD1AAA654> /Applications/Avogadro.app/Contents/lib/openbabel/jaguarformat.so
0x14ad1000 - 0x14ae2ff7 +MCDLformat.so (??? - ???) <B8E8C1DD-914A-E8B9-9D87-4F025DC51972> /Applications/Avogadro.app/Contents/lib/openbabel/MCDLformat.so
0x14aed000 - 0x14b02ffb +mdlformat.so (??? - ???) <5B5C46B8-082E-D835-2E41-1793278C0E29> /Applications/Avogadro.app/Contents/lib/openbabel/mdlformat.so
0x14b13000 - 0x14b1eff7 +mmcifformat.so (??? - ???) <44390027-FF47-D867-5A54-E582AAAD191D> /Applications/Avogadro.app/Contents/lib/openbabel/mmcifformat.so
0x14b28000 - 0x14b30ff7 +mmodformat.so (??? - ???) <33463713-58F1-9F3A-C662-3BF403E74CD2> /Applications/Avogadro.app/Contents/lib/openbabel/mmodformat.so
0x14b38000 - 0x14b40ffb +MNAformat.so (??? - ???) <ECF5F3CF-FC11-A032-7944-A8215F64588E> /Applications/Avogadro.app/Contents/lib/openbabel/MNAformat.so
0x14b47000 - 0x14b50ff7 +mol2format.so (??? - ???) <FFDEC46A-7D6D-B875-1485-6F60FE8B9116> /Applications/Avogadro.app/Contents/lib/openbabel/mol2format.so
0x14b58000 - 0x14b61ffb +moldenformat.so (??? - ???) <3418A37B-7EA0-10DA-A5AB-95A07B00664D> /Applications/Avogadro.app/Contents/lib/openbabel/moldenformat.so
0x14b69000 - 0x14b73fff +molproformat.so (??? - ???) <66AC2DC2-2DE4-1B38-5B96-0C42668F32D1> /Applications/Avogadro.app/Contents/lib/openbabel/molproformat.so
0x14b7c000 - 0x14b81ff3 +molreport.so (??? - ???) <BFC94ADF-73CF-8674-0A45-A410EDD501CF> /Applications/Avogadro.app/Contents/lib/openbabel/molreport.so
0x14b86000 - 0x14b93ff3 +mopacformat.so (??? - ???) <0BDC887D-EA74-874D-A613-A7F378DBF9B1> /Applications/Avogadro.app/Contents/lib/openbabel/mopacformat.so
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0x9c4e4000 - 0x9c698ff3 libicucore.A.dylib (46.1.0 - compatibility 1.0.0) <6270318A-CA9A-376C-AD6D-64A9B4B4A26E> /usr/lib/libicucore.A.dylib
0xba900000 - 0xba91bffd libJapaneseConverter.dylib (54.0.0 - compatibility 1.0.0) <5635DF40-8D8E-3B8C-B075-7B3FC0F184A4> /System/Library/CoreServices/Encodings/libJapaneseConverter.dylib
0xbab00000 - 0xbab21ff6 libKoreanConverter.dylib (54.0.0 - compatibility 1.0.0) <17226124-8E8A-34EB-A2C4-D4A0469CF45B> /System/Library/CoreServices/Encodings/libKoreanConverter.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 71
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 2952
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=181.5M resident=132.2M(73%) swapped_out_or_unallocated=49.3M(27%)
Writable regions: Total=138.5M written=5400K(4%) resident=30.7M(22%) swapped_out=0K(0%) unallocated=107.8M(78%)

REGION TYPE VIRTUAL
=========== =======
ATS (font support) 32.8M
CG backing stores 19.6M
CG raster data 128K
CG shared images 3448K
CoreGraphics 8K
CoreServices 1592K
IOKit 6308K
MALLOC 45.6M
MALLOC guard page 48K
Memory tag=240 4K
Memory tag=242 12K
Memory tag=243 4K
Stack 69.1M
VM_ALLOCATE 16.4M
CI_BITMAP 80K
DATA 10.7M
DATA/OBJC 60K
IMAGE 1256K
IMPORT 728K
LINKEDIT 57.5M
OBJC 1444K
OBJC/DATA 4K
PAGEZERO 4K
TEXT 124.0M
__UNICODE 544K
mapped file 315.1M
shared memory 2004K
shared pmap 10.4M
=========== =======
TOTAL 718.5M

Model: MacBookPro8,1, BootROM MBP81.0047.B0E, 2 processors, Intel Core i7, 2.7 GHz, 4 GB, SMC 1.68f96
Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384 MB
Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80AD, 0x484D54333235533642465238432D48392020
Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80AD, 0x484D54333235533642465238432D48392020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xD6), Broadcom BCM43xx 1.0 (5.100.98.75.6)
Bluetooth: Version 2.5.0f17, 2 service, 19 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Network Service: AirPort, AirPort, en1
Serial ATA Device: ST9500325ASG, 500,11 GB
Serial ATA Device: MATSHITADVD-R UJ-898
USB Device: hub_device, 0x0424 (SMSC), 0x2513, 0xfd100000 / 2
USB Device: USB Receiver, 0x046d (Logitech Inc.), 0xc52b, 0xfd120000 / 4
USB Device: IR Receiver, apple_vendor_id, 0x8242, 0xfd110000 / 3
USB Device: FaceTime HD Camera (Built-in), apple_vendor_id, 0x8509, 0xfa200000 / 3
USB Device: hub_device, 0x0424 (SMSC), 0x2513, 0xfa100000 / 2
USB Device: BRCM2070 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0xfa110000 / 5
USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821a, 0xfa113000 / 8
USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x0246, 0xfa120000 / 4

[Geoff Hutchison]

Can you try a nightly snapshot of 1.1? I haven't had problems with Lion on these -- they're built on my Lion desktop:

http://avogadro.openmolecules.net/nightly/mac/unstable/

[Anonymous]

The similar for me. Surprisingly it works fine on newly created account on the same machine.