[Appris-announce] Fwd: APPRIS links in UCSC genome browser

[José M. R. <jmr...@cn...>]

Dear Mark,

Due to APPRIS accepts genes from other new species (mouse and rat), a few new changes has been made in the website.



For example, 

* Website Links:


- Older links:
http://appris.bioinfo.cnio.es/report.html?id=ENSG00000012048&namespace=Ensembl_Gene_Id
http://appris.bioinfo.cnio.es/report.html?id=ENST00000357654&namespace=Ensembl_Transcript_Id

- New links:
(Human)
http://appris.bioinfo.cnio.es/report.html?id=ENSG00000012048&namespace=Ensembl_Gene_Id&specie=homo_sapiens
http://appris.bioinfo.cnio.es/report.html?id=ENST00000357654&namespace=Ensembl_Gene_Id&specie=homo_sapiens

(Mouse)
http://appris.bioinfo.cnio.es/report.html?id=ENSMUSG00000022721&namespace=Ensembl_Gene_Id&specie=mus_musculus

(Rat)
http://appris.bioinfo.cnio.es/report.html?id=ENSRNOG00000001885&namespace=Ensembl_Gene_Id&specie=rattus_norvegicus


* REST services:

Older links (This REST services still working):
http://appris.bioinfo.cnio.es/ws/latest/rest/appris/id/ENSG00000099904 


New links:
	(Human)
http://appris.bioinfo.cnio.es/ws/rest/appris/id/homo_sapiens/ENSG00000099904

	(Mouse)
		http://appris.bioinfo.cnio.es/ws/rest/matador3d/id/mus_musculus/ENSMUSG00000022721

	(Rat)
		http://appris.bioinfo.cnio.es/ws/rest/matador3d/id/rattus_norvegicus/ENSRNOG00000001885



Sorry for any inconvenience.

Best Regards,
Jose Rodríguez






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Begin forwarded message:

>> 
>> The links in the UCSC genome browser to APPRIS have quit working.  Links like:
>> 
>> http://appris.bioinfo.cnio.es/report.html?id=ENSG00000012048&namespace=Ensembl_Gene_Id
>> http://appris.bioinfo.cnio.es/report.html?id=ENST00000357654&namespace=Ensembl_Transcript_Id
>> 
>> 
>> now product:
>> 
>>    Your query does not match any genes in the database. Note that the query must:
>> 
>>        have alphanumeric values, at least one of which must be a letter
>>        be at least three characters long
>>        valid Ensembl identifier.
>>        For this cases, you have to give the exact identifier.
>> 
>> 
>> Cheers,
>> Mark
> 



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