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CTK (CLIP Tool Kit) is a computational biology toolkit implemented in Perl, designed for analyzing CLIP sequencing data. It offers a streamlined pipeline from raw reads through peak calling and motif discovery.
Features
- Parses raw CLIP-seq reads and performs quality filtering
- Identifies cross-linking induced mutation sites (CIMS)
- Detects enriched RNA motif regions and peaks
- Outputs standardized BED/narrowPeak formats
- Extensible via Perl scripts (e.g. tag2cluster, tag2collapse)
- Comprehensive documentation and active user support group
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Scientific/EngineeringFollow CTK
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