Search Results for "breast cancer detection"
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Showing 19 open source projects for "breast cancer detection"
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Collaborate is customizable case management software for non-profits and social services agencies with teams of 5+ staff.
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BackBox seamlessly integrates with network monitoring and NetOps platforms and automates configuration backups, restores, and change detection. BackBox also provides before and after config diffs for change management, and automated remediation of discovered network security issues.
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HealthFusion
AI Disease Detections System
HealthFusion has identified a critical business problem, which is the lack of accessibility and timely detection of multiple diseases. The traditional approach of detecting diseases is time-consuming, expensive, and not accessible to everyone, especially in remote areas. This problem can lead to delayed diagnosis and treatment, which can have serious consequences for patients. The proposed solution, HealthFusion, is novel and practical as it offers a comprehensive solution to detect multiple... -
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KMedicalImageScreener1
A Medical Scanner for Computer Aided Detection of MRI Scans
This app is JSP that has been tested for use in Computer Aided Detection of MRI scans in the cranial and abdominal areas for cancer detection. There was one case study completed with a very high accuracy rate of over 95% on test data. This app is provided as-is under the GNU License with Accrediation. Let me know what you think, Diana -
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miniABS
miniABS (mini Absolute Breast Cancer Subtyper)
miniABS (mini Absolute Breast Cancer Subtyper) is an absolute, single-sample subtype classifier for breast cancer using Random Forest model of pairwise gene expression ratios (PGER) among 11 functional genes. With a systematic gene selection and reduction step, we aimed to minimize the size of gene set without losing a functional interpretability of the classifier. We validated the model performance using a large, heterogeneous cohort that consists of multiple public datasets across four... -
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novoBreak
Robust detection of somatic structural breakpoints in cancer genomes
novoBreak is a tool used in cancer genomic studies to discover SV (both somatic and germline) breakpoints. It can report accurate breakpoints of Deletions (DEL), Duplications (DUP), Inversions (INV) and Translocations (TRA) (you should consider some of them are mobile elements insertions or templated insertions). For novel insertions, we may only report the breakpoints but not the inserted sequence. Please forget about novel insertions at the moment. We will work on that later... -
PMG is a low-code software platform that allows users to configure automation solutions and business applications to drive digital transformation initiatives. From streamlining business processes through automation, to integrating existing systems and filling in point solution functionality gaps, to delivering a collaborative workspace and unified user experience – PMG’s low-code platform does it all without coding. Business users as well as IT resources are empowered to configure, deploy, and maintain solutions that meet their company’s specific needs.
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E2F1Map
Logic based simulations of E2F1 regulatory core for disease signatures
We provide comprehensive molecular interaction map of E2F1 transcription factor in tumor progression and metastasis. We provide various scripts, boolean based models to identify molecular signatures for predicting EMT phenotype in bladder and breast cancer model. -
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SCNVSim
SCNVSim, a tool to simulate somatic CNV and Strucuture Variants
... points, which are essential for developing and evaluating somatic CNV and SV detection methods in cancer genomics studies. -
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Featureextraction
Feature Extraction: Fractal, Statistical, Geostatistical, Succolarity
The objective of this project is to find in the literature the best feature extractors related to the detection and diagnosis of disease in the breast, and implement them in order to make it open to research groups worldwide. The features will be available as an API (Application Programming Interface) in Java. -
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CupidTool
Cupid: simultaneous reconstruction of miRNA-target and ceRNA networks
Chiu et. al., Genome Research 2014 Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competitive endogenous RNA (ceRNA) interactions. We showed that our integrative approach significantly improves on miRNA-target prediction accuracy as assessed by both mRNA and protein level measurements in breast cancer cell lines. Cupid is implemented in 3 steps: Step 1: re-evaluate candidate miRNA binding sites in 3’ UTRs, as inferred by TargetScan... -
With Twilio Voice, you can build unique phone call experiences with one API, to create, receive, control and monitor calls with just a few lines of code. Create an engaging voice experience that you can quickly scale and modify with a wide array of customization options and resources.
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endo-MCML
MC model of Endoscopic Optical Spectroscopy for tubular organ
We present a Monte Carlo static light migration model (Endo-MCML) to simulate endoscopic optical spectroscopy for tubular organs such as esophagus and colon or organs lying behind tubular organs like prostate. Differ from the well-known multi-layered slab tissue model (MCML), our model employs multi-layered hollow cylinder which emitting and receiving light both from the inner boundary to meet the conditions of endoscopy. Inhomogeneous sphere can also be added in tissue layers to model cancer... -
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DOTS-Finder
Driver Oncogenes and Tumor Suppressors Finder
A key challenge in the analysis of cancer genomes is the identification of driver genes from the vast number of mutations present in a cohort of patients. DOTS-Finder, is a new tool which allows the detection of driver genes through the sequential application of functional and frequentist approaches, and is specifically tailored to the analysis of few tumor samples. We have identified driver genes in the genomic data of 34 tumor types derived from existing exploratory projects... -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
... the best scores in almost all testings. We have also evaluated the practicability of the alignments of GLProbs by applying the tool to three biological applications, namely phylogenetic trees construction, protein secondary structure prediction and the detection of high risk members for cervical cancer in the HPV-E6 family, and the results are very encouraging. -
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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ORganic Virtual Library (ORVIL) Program
ORganic VIrtual Library (ORVIL)
... affecting the entire backbone of the molecule enabling minimum molecular complexities. Its particular features are its simplicity to use, portable SMILES format and high speed of library construction. Benchmarking of Tamoxifen (drug for breast cancer) was performed which revealed a compound having similar architecture of known drug analogue, Toremifene. You can access the abstract and full text article here : http://indianjournals.com/ijor.aspx?target=ijor:ijaritac&volume=2&issue=2&article=006 -
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This project will develop standardized data formats and tools to facilitate sharing data between agent-based, multicellular models. The data format, postprocessing code, and visualisation tools have been successfully used for breast cancer modeling. This project has been superseded by the MultiCellDS project as of 2014 -- http://MultiCellDS.org
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Breast Cancer Tissue Bank, Australia has developed eAuditor, a plugin for Caisis 5.0, used as data entry auditing and quality assurance module. More information about Caisis can be found on www.caisis.org.
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JSADM es un proyecto de tesis sobre busqueda de patrones mediante la utilización de redes neuronales y diferentes algoritmos de mineria de datos.
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Decision support tool that assesses breast cancer risk and identifies risk-reducing interventions. Includes web service implementations of established models -- BRCAPRO, Gail, Claus, BCSC Density -- for calculating breast cancer risk.
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