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SmartSlog (Smart Space Ontology) is a software/application development kit (SDK or ADK) for programming Smart-M3 agents (Knowledge Processors, KPs) that consume/produce smart space content according with its high-level ontological representation. SmartSlog applies the code generation approach: given an OWL ontology description, the ontology programming library is produced. The latter provides API to access the smart space via a Smart-M3 Semantic Information Broker (SIB) and data structures...
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NiagaraAxIOT
A library of IoT connectors for the Niagara Ax Platform
Simple connectors to multiple IoT service providers for the Niagara Ax framework. Service connectors include: Carriots Ducksboard (discontinued by vendor) EmonCms Exosite Sen.se Tempodb Thingspeak Xively -
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SeqPig
Use Apache Pig to process your large sequencing datasets!
SeqPig is a library for Apache Pig for the distributed analysis of large sequencing datasets. It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output. For more information see the manual at http://seqpig.sourceforge.net/ -
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scFvMiner
Scripts for analysing NGS data
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. ... -
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JReliability allows to derive several reliability-related measures like Mean-Time-To-Failure (MTTF) or Mission-Time (MT) of complex systems that are modeled using Boolean functions, efficiently encoded in Binary Decision Diagrams (BDDs).
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LAML:Linear Algebra and Machine Learning
A stand-alone Java library for linear algebra and machine learning
LAML is a stand-alone pure Java library for linear algebra and machine learning. The goal is to build efficient and easy-to-use linear algebra and machine learning libraries. The reason why linear algebra and machine learning are built together is that full control of the basic data structures for matrices and vectors is required to have fast implementation for machine learning methods. -
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G4LTL-ST
Generating PLC programs from formal specifications
G4LTL-ST is a standalone tool and a Java library for automatically generating industrial control software (supporting IEC-61131-3 Structure Text) from LTL or extended logic specifications. See Tutorial.txt inside the package for step-by-step instructions. For technical demails, see CAV'14 paper "G4LTL-ST: Automatic Generation of PLC Programs". The old version (G4LTL; under BSD license) is available under file\arxiv. -
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Since version 3 (inclusive) the project was moved to https://github.com/bagaturchess/EGTB-In-Java Portable Java API for usage of Gaviota Endgame Tablebases
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JSONjuicer
JSON parser and encoder
A Java open-source library which makes encoding and decoding Java data-structures to and from JSON text easy and intuitive. -
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SimpleElastix
Medical Image Registration Library
SimpleElastix is an extension of SimpleITK that comes with the elastix C++ image registration library. This makes state-of-the-art medical image registration really easy to do in languages like Python, Java, C# and R. -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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HostMonApp
The Simplest Multi-User Latency Monitoring Web App
Hostmon is a latency monitoring web app designed for ISP Support Technicians. Hostmon enables the Support Technician to provide a more rounded and detailed oriented service to his/her customers. Hostmon gives the Technician the ability to constantly monitor the network latency to hundreds of customer devices simultaneously. The Technician now has available, not only up to the minute network latency graphs for each device, but they can also view the historic latency information for monitored... -
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Edifatto
Tool for parsing, verifying, browsing and converting EDIFACT and X12
'Edifatto' is a tool for parsing, verifying and browsing EDI (EDIFACT and X12) documents. User interfaces are GUI, command line and Java API. In addition to the core feature set, EDI documents can be expported as and imported from XML documents allowing the integration into XML-based tools and workflows (like anonymization or XSLT-processing). -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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The project offers support for the java.util.logging framework. The library contains a formatter in printf style, that is small, powerful and most flexible.
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Waterloo
Java-based scientific graphics
Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab. -
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dcdroplet
A logging library for Java, based on string tags instead of levels.
A logging library where the user can specify appenders and tags for logging. All logging messages are associated with a tag. If an appender has that tag name in its list of tag configurations, then the message is logged to that appender. There are several types of appenders where are suppored by DCDroplet: Console, File, RollingFile?, HTMLFile, and XMLFile. -
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Open Cezeri Library
Effective Linear Algebra and Computer Vision Library with JAVA
OCL stands for Open Cezeri Library (yet another linear algebra and matrix library). This library provides rapid coding as matlab ease of use. To learn for library please try to use test examples at OpenCezeriLibrary\test\test. It is originally developed at el-cezeri laboratory of Siirt University, in order to establish generic framework of reusable components and software tools for machine vision, machine learning, AI and robotic applications. Currently, it holds following main concepts 1-... -
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JCLAL
A Java Class Library for Active Learning
JCLAL is a general purpose framework developed in Java for the active learning research area. JCLAL framework is open source software and it is distributed under the GNU general public license. It is constructed with a high-level software environment, with a strong object oriented design and use of design patterns, which allow to the developers reuse, modify and extend the framework. If you want to refer to JCLAL in a publication, please cite the following JMLR paper. The full citation... -
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Java-Arduino Communication Library
Serial Communication between Java and Arduino made simple.
Serial Communication between Arduino and Java has never been simpler. A better alternative to the RXTX library, the JavaArduinoLibrary is an easy to use library with simple methods that allow you, the JAVA programmer, to read and write from the serial port. Seamless serial communication with the port of your choice. Consists of a class that extends the JComboBox to provide a list of all available ports for selection. -
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3D Grapher
Easy-to-use software for plotting functions of two variables.
3D Grapher is a software for plotting functions of two variables. It is a simple, easy to use, GPU accelerated, tool for making various surface plots. Additional requirements: JDK / JRE 8 OpenGL 2+ -
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ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
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FileProtocol
File Access from your Browser
Bottom-line File Access using your browser File explorer, File download, File upload, Direct Links
