Search Results for "parallel genetic algorithm" - Page 4
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Showing 214 open source projects for "parallel genetic algorithm"
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niGA
Heterogenous Multiprocessor Scheduling Using Genetic Algorithms
Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming -
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ABM-Calibration-SensitivityAnalysis
Codes and Data for Calibration and Sensitivity Analysis of ABM
... fitting: 1. Full Factorial Design 2. Simple Random Sampling 3. Latin Hypercube Sampling 4. Quasi-Newton Method 5. Simulated Annealing 6. Genetic Algorithm 7. Approximate Bayesian Computation b. Sensitivity Analysis: 1. Local SA 2. Morris Screening 3. DoE 4. Partial (Rank) Correlation Coefficient 5. Standardised (Rank) Regression Coefficient 6. Sobol' 7. eFAST 8. FANOVA Decomposition Have also a look on our other projects: http://www.uni-goettingen.de/de/315075.html -
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ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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Evochumps
Evolving recursive artificial neural networks in a simulation.
Evochups allows you to create a simple simulation environment where individuals called "chumps" display behavior according to their simulated brains. Each Chump has a recursive neural network which takes input from thier environment and controls the chump's behavior. It has a built-in evolutionary algorith to let the brains evolve conditoned to selective pressure. The program's interface allows you to manipulate all kinds of parameters of both the simulation, the genetic algorithm, and each... -
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The sequence alignment task in MAGI (magi.ucsd.edu) is based on the miRanda algorithm, but we redesign the miRanda algorithm on GPU by taking its advantages of massively parallel computing and extra high memory bandwidth using using NVIDIA’s Compute Unified Device Architecture (CUDA). The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has...
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy. -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic... -
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gpgmpi
An GPGMP in C++/OpenCL with improved time step algorithm
The need for speed is always a challenge for large-scale stochastic simulation. This software is based on a parallel stochastic simulation algorithm already implemented on Graphics Processing Unit (GPU) for inhomogeneous reaction-drift-diffusion systems. We suggest an improved choice of time step which turns out to be almost 3 or even more times fast with nearly identical accuracy. The software is now completely implemented in C++ and OpenCL which only depends on boost library and GPU vendor’s... -
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NNBrain
A free, open source collection of neural network based AI agents.
NNBrain is a free and open source collection of artificial intelligence agents. These agents have applications in video games, research, business, and more. The included agents function in both discrete and continuous action and state spaces. -
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grn_inference_multigpu
This project is a exhaustive search algoritm for multiple GPUs
Gene regulatory networks (GRN) inference is an important bioinformatics problem in which the gene interactions need to be deduced from gene expression data, such as microarray data. <br> Feature selection methods can be applied to this problem. A feature selection technique is composed by two parts: a search algorithm and a criterion function. Among the search algorithms already proposed, there is the exhaustive search where the best feature subset is returned, although its computational... -
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Parallel DPCM
C# Parallel implementation of DPCM alogrithm
An implementation of the DPCM algorithm for compressing and decompressing an avi video file. It shows the compression size, as it is saved in a txt file near the avi original file. The decompression results in another avi file, saved near the original file. If the width and height of the frames aren't a multiple of 16, they are completed with black pixels. The pixel macroblocks of 16x16 are generated on separate threads for each frame and they are replaced on frames at decompression... -
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The parallelized FDTD Schrodinger Solver implements a parallel algorithm for solving the time-independent 3d Schrodinger equation using the finite difference time domain (FDTD) method. See the Hosted Apps > MediaWiki menu item for more information.
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Molecular Measurer
Parallel, Stochastic Measurement of Molecular Surface Area
A program to measure molecular surface area. The algorithm is GPU-accelerated using CUDA and is described in the research paper linked from the project home page. The input to the program is xyzr files, which can be generated from pdb files. -
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PGraph
Visual Programming Tool for Parallel Computations
PGraph is a free and cross-platform tool for parallel computation that provides you to construct parallel algorithms in easy visual way and generate source code automatically. PGraph is based on C language and flow chart. We call this combination as Visual-Symbolic Programming Language. Now it is able to generate source code in C/C++ for MPI standart. -
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OpenAIL
Open Artificial Intelligence Library
[Open Artificial Intelligence Library]. This library main goal is to provide a tool box to those who want to use algorithm such as neural network or genetics Algorithm and all algorithms that are commonly within the Artificial Intelligence field. -
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AEvolution
Artificial life game
Artificial life game using a genetic algorithm in a simple 2D world. -
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Reactor Breeder
A Genetic Algorithm for Reactors in StarMade
This software uses a genetic algorithm to "evolve" reactor designs for Schema's space-simulation game, Star-Made (http://star-made.org/). One of the more unique aspects of the game is that ship power management is not as simple as filling a cube with power generation blocks. This mechanism leads to difficulties in getting maximal power generation out of such reactors. This program rectifies this issue by using a self-organizing variant of brute force search. Much of the search space... -
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Genetic Polynomials
genetic algorithm to approximate a set of points with polynomial
genetic algorithm to approximate a set of points with polynomial -
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Open Genetic Algorithm Toolbox
This is a MATLAB toolbox to run a GA on any problem you want to model.
This is a toolbox to run a GA on any problem you want to model. You can use one of the sample problems as reference to model your own problem with a few simple functions. You can collaborate by defining new example problems or new functions for GA, such as scaling, selection or adaptation methods. In that case, you should then include your credits in the file, upload it to matlab central and contact the author. Suggestions are also welcome but naturally I won't be able to attend... -
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QuasiRecomb
Probabilistic inference of viral Quasispecies
Please get the binary latest version at https://github.com/armintoepfer/QuasiRecomb/releases Description: RNA viruses are present in a single host as a population of different but related strains. This population, shaped by the combination of genetic change and selection, is called quasispecies. Genetic change is due to both point mutations and recombination events. We present a jumping hidden Markov model that describes the generation of the viral quasispecies and a method to infer its... -
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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DJDarwin
A Genetic algorithm approach to creating beats.
The program puts beats through evolution - survival, mutations, reproduction. The purpose, in the words of Africa Bambaataa - Looking for the perfect beat. Using a genetic algorithmic framework, the user's taste defines a Beat fitness function - she decides which beats survive and breed, and which join the choir invisible. In addition, the user can easily define an automatic fitness function, put the program on 'autopilot' mode, and let it speed up evolution. Different types of... -
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ITS-GenTL
Traffic Lights parallel optimization software using Genetic Algorithms
ITS-GenTL - Intelligent Transport System Genetic Algorithm Traffic Lights optimizer This software is aimed to optimize traffic lights characteristics for traffic flows in urban networks in real-time using Genetic Algorithms. Now it uses SUMO project modeling software to model traffic flows while iteration of optimization process. -
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MapPSO is a tool for Ontology Alignment, which uses Discrete Particle Swarm Optimisation. A particle swarm is used to search for the optimal alignment. The algorithm is massively parallel and adapts naturally on parallel architectures.
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texgenpack
Texture compression and conversion program with KTX and DDS support.
texgenpack is a texture compression and conversion program featuring a command line utility and a simple GUI program . Compression is implemented using a genetic algorithm. It supports compression, decompression, conversion and comparison of texture and image files. The image format supported is PNG, while for textures there is support for KTX, PKM and DDS using ETC1, ETC2, DXT1/3/5 or BPTC (BC7) texture compression. Several uncompressed texture format are also supported. This program...
