Search Results for "docking" - Page 2
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Showing 80 open source projects for "docking"
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PSOVina 2.0
The Hybrid Particle Swarm Optimization for Protein-Ligand Docking
A fast docking tool based on the efficient optimization algorithm of Particle Swarm Intelligence and the framework of AutoDock Vina. Based on the initial PSO implementation, our PSOVina method has undergone several important improvements to enhance the docking accuary and achieve remarkable efficiency as compared to the original AutoDock Vina. -
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Fragment-based Peptide Docking
Fragment-based Peptide Docking
A fortran based fragmentizing-docking-remerging program for long peptides (10-16 amino acids) docking simulations. This program is compiled by intel fortran at OpenSUSE 64-bits. Designed for 4GPU servers. NOTE: AMBER software packages, AMBER Tools and pmemd.cuda must be normally installed to fully operate this program. However you can still sample massive initial structures (500k~2m peptide conformations) without AMBER. -
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eddy
An editor for the specification of Graphol ontologies
...Eddy features a design environment specifically thought out for generating Graphol ontologies through ad-hoc functionalities. Drawing features allow designers to comfortably edit ontologies in a central viewport area, while two lateral docking areas contains specifically-tailored widgets for editing, navigating and inspecting open diagrams. Eddy is equipped with design-time syntax validation functionalities which prevents ontology designers from constructing invalid Graphol expressions: feedback on the validity of the expression is given through color coding diagram elements. ... -
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LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.
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Icarus Scene Engine
3D .NET engine for Windows, Linux, Mac
Icarus Scene Engine is a cross-platform, CLS-compliant 3D framework, integrating open source APIs into a cohesive all-open-source, all .NET solution. For Windows, MacOSX & Linux. Uses OpenTK, OpenGL, OpenAL APIs for graphics and audio. Runs on Mono/.NET. Links to FFMpeg for streaming video, and FreeType as a temporary conversion mod to bring fonts into a native XML format. Binary builds of Icarus will be infrequent, roughly every 18 months or so, the GIT code updates regularly on a... -
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Roman Life Manager
Personal information manager. Free, opensource. Powerful and simple.
Personal information management application. Powerful and simple. Free and opensoure. Inspired by todos.txt and markdown. -
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Drombler
Drombler FX is a modular RCP for JavaFX based on OSGi and Maven.
Drombler FX is a modular Rich Client Platform for JavaFX based on OSGi and Maven (POM-first). The artifacts are available from Maven Central. Have a look at the Wiki for more information. -
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Space Docking App
Cross platform iPhone game for the Parrot AR.Drone
Get ready and try to dock your Parrot AR.Drone to a virtual ISS. By using the markers that are shipped with your Parrot AR.Drone, this game renders a virtual ISS and other obstacles in your living room! Try to safely dock your AR.Drone to the ISS, remove space junk and support science along the way! Support for iOS, Linux (and Windows, though a bit wonky) -
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notepas
Advanced multiplatform text editor for developers
Notepas is a fast native multiplatform text editor written in Lazarus and can be compiled for multiple platforms and widget sets using the advanced native Free Pascal Compiler. Aimed towards developers it is equipped with some functions usually not found in other text editors and introduces a couple of new exclusive features. -
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Jagent is a suite for manipulating Creatures 3 and Docking Station agents. It consists of a sprite tool (Edos) and a PRAY tool (Monk). It requires Java (http://java.com/)
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AutoMap
AutoMap is a tool for structural biology and drug design.
AutoMap takes a series of poses obtained from molecular docking and applies the site, epitope and conformational mapping techniques to the poses to select likely ligand binding modes. -
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wmtime
Window Maker dockapp that displays the time and date
WMTime displays the time and date and gives you some nice additional features too. It is intended for docking in Window Maker. It currently provides: * the time and date; * a realtime morphing interface (analog <> digital mode); * auto-scaled and anti-aliased hands; * localization: displaying the day and date in various languages; * three user-defined commands to launch. -
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snowflakedock
Snowflake generation through docking
Generates a nice snowflake-type image by iteratively docking a random particle to a growing flake. -
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WebX
A internet browser using a unique interface.
A browser that is more compliant than IE 10, with a sophisticated docking tool that increases productivity (Or procrastination). -
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AJAX based wiki designed to operate like a desktop help viewer(chm)
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vulcan2012
Vulcan Project is Flex(Actionscript) micro-architecture
Vulcan Project is micro-architecture that are implemented the basic commands (open, close, undo / redo, copy / paste ...) and the docking-system is required for UI development. Vulcan Project is based on Flex / AIR framework. -
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gEcrit is a Python orientated source code editor. It tries to keep the interface as clean as possible and keep the menus simple. It features all the common features a Python programmer might need, including an interactive Python shell.
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ParallelVSR
ParallelVSR - a pipeline for parallel virtual screening on R platform
...We have integrated Ligand Based Virtual Screening (LBVS) technique which uses ChemmineR - a reliable cheminformatics package on R platform and Structure Based Virtual Screening (SBVS) technique which uses AutoDock Vina - freely available and widely used protein-ligand docking tool. This pipeline has R scripts to perform VS automatically in step-wise manner. To increase the efficiency of VS, we have used data level parallel processing approach using task-pull methodology of Master-Slave communication protocol. -
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Sanaware Java Docking is a library for managing the windows of a Java Swing application in split panes, tabs, lines, grids and floating windows. The windows can be moved by drag and drop. The workspace can be saved and reloaded.
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MyDoggy is an IntelliJ Idea like docking framework for managing secondary windows within the main window. MyDoggy allows to move, resize or detach those secondary windows. Also, MyDoggy provides support for content management of the main window.
